Stderr output

<core_client_version>7.24.5</core_client_version>
<![CDATA[
<stderr_txt>
03:05:20 (679675): wrapper (7.7.26015): starting
03:05:20 (679675): wrapper: running run_atlas (--nthreads 8)
[2025-11-06 03:05:20] Arguments: --nthreads 8
[2025-11-06 03:05:20] Threads: 8
[2025-11-06 03:05:20] Checking for CVMFS
[2025-11-06 03:05:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-06 03:05:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-06 03:05:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-06 03:05:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-06 03:05:21] 2.13.3.0 559165 82 47832 152532 1 188 1675799 4096001 922 130560 0 339338 99.992 5460 509 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-06 03:05:21] CVMFS is ok
[2025-11-06 03:05:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-06 03:05:21] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-06 03:05:21] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-06 03:05:21] Further information can be found at the LHC@home message board.
[2025-11-06 03:05:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-06 03:05:21] Checking for apptainer binary...
[2025-11-06 03:05:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-06 03:05:21] Running /usr/bin/apptainer --version
[2025-11-06 03:05:21] apptainer version 1.4.4
[2025-11-06 03:05:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-06 03:05:21] garage
[2025-11-06 03:05:21] apptainer works
[2025-11-06 03:05:21] Set ATHENA_PROC_NUMBER=8
[2025-11-06 03:05:21] Set ATHENA_CORE_NUMBER=8
[2025-11-06 03:05:21] Starting ATLAS job with PandaID=6873882126
[2025-11-06 03:05:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-06 03:30:34]  *** The last 200 lines of the pilot log: ***
[2025-11-06 03:30:34]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a1/53/log.47240594._000210.job.log.tgz.1
[2025-11-06 03:30:34]  workdir=None
[2025-11-06 03:30:34] ]
[2025-11-06 03:30:34] 2025-11-06 10:29:27,071 | INFO     | transferring file log.47240594._000210.job.log.tgz.1 from /var/lib/boinc-client/slots/1/PanDA_Pilot-6873882126/log.47240594._000210.job.log.tgz.1 to /var/lib/boinc
[2025-11-06 03:30:34] 2025-11-06 10:29:27,071 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/1/PanDA_Pilot-6873882126/log.47240594._000210.job.log.tgz.1 /var/lib/boinc-client/slots/1/log.472405
[2025-11-06 03:30:34] 2025-11-06 10:29:27,078 | INFO     | adding to output.list: log.47240594._000210.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a1/53/log.47240594._000210.job.log.tg
[2025-11-06 03:30:34] 2025-11-06 10:29:27,079 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-11-06 03:30:34] 2025-11-06 10:29:27,079 | INFO     | summary of transferred files:
[2025-11-06 03:30:34] 2025-11-06 10:29:27,079 | INFO     |  -- lfn=log.47240594._000210.job.log.tgz.1, status_code=0, status=transferred
[2025-11-06 03:30:34] 2025-11-06 10:29:27,079 | INFO     | stage-out finished correctly
[2025-11-06 03:30:34] 2025-11-06 10:29:27,079 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-06 03:30:34] 2025-11-06 10:29:27,977 | INFO     | time since job start (1441s) is within the limit (172800.0s)
[2025-11-06 03:30:34] 2025-11-06 10:29:28,315 | INFO     | monitor loop #115: job 0:6873882126 is in state 'finished'
[2025-11-06 03:30:34] 2025-11-06 10:29:28,315 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-06 03:30:34] 2025-11-06 10:29:29,755 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-11-06 03:30:34] 2025-11-06 10:29:29,982 | INFO     | time since job start (1443s) is within the limit (172800.0s)
[2025-11-06 03:30:34] 2025-11-06 10:29:30,818 | INFO     | monitor loop #116: job 0:6873882126 is in state 'finished'
[2025-11-06 03:30:34] 2025-11-06 10:29:30,818 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-06 03:30:34] 2025-11-06 10:29:30,916 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-06 03:30:34] 2025-11-06 10:29:30,916 | INFO     | job 6873882126 has state=finished
[2025-11-06 03:30:34] 2025-11-06 10:29:30,916 | INFO     | preparing for final server update for job 6873882126 in state='finished'
[2025-11-06 03:30:34] 2025-11-06 10:29:30,916 | INFO     | this job has now completed (state=finished)
[2025-11-06 03:30:34] 2025-11-06 10:29:30,916 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-06 03:30:34] 2025-11-06 10:29:30,916 | INFO     | log transfer has been attempted: DONE
[2025-11-06 03:30:34] 2025-11-06 10:29:30,916 | INFO     | job 6873882126 has finished - writing final server update
[2025-11-06 03:30:34] 2025-11-06 10:29:30,916 | INFO     | total number of processed events: 400 (read)
[2025-11-06 03:30:34] 2025-11-06 10:29:30,917 | INFO     | executing command: lscpu
[2025-11-06 03:30:34] 2025-11-06 10:29:30,930 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-06 03:30:34] 2025-11-06 10:29:31,987 | INFO     | time since job start (1445s) is within the limit (172800.0s)
[2025-11-06 03:30:34] 2025-11-06 10:29:33,321 | INFO     | monitor loop #117: job 0:6873882126 is in state 'finished'
[2025-11-06 03:30:34] 2025-11-06 10:29:33,321 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-06 03:30:34] 2025-11-06 10:29:33,993 | INFO     | time since job start (1447s) is within the limit (172800.0s)
[2025-11-06 03:30:34] 2025-11-06 10:29:35,824 | INFO     | monitor loop #118: job 0:6873882126 is in state 'finished'
[2025-11-06 03:30:34] 2025-11-06 10:29:35,824 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-06 03:30:34] 2025-11-06 10:29:35,998 | INFO     | time since job start (1449s) is within the limit (172800.0s)
[2025-11-06 03:30:34] 2025-11-06 10:29:35,998 | INFO     | 1451s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-06 03:30:34] 2025-11-06 10:29:36,507 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-06 03:30:34] 2025-11-06 10:29:36,509 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3706.8543124999997
[2025-11-06 03:30:34] 2025-11-06 10:29:36,510 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6873882126/memory_monitor_summary.json (trf name=prmon)
[2025-11-06 03:30:34] 2025-11-06 10:29:36,511 | INFO     | extracted standard info from prmon json
[2025-11-06 03:30:34] 2025-11-06 10:29:36,511 | INFO     | extracted standard memory fields from prmon json
[2025-11-06 03:30:34] 2025-11-06 10:29:36,511 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-06 03:30:34] 2025-11-06 10:29:36,511 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-06 03:30:34] 2025-11-06 10:29:36,511 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-06 03:30:34] 2025-11-06 10:29:36,511 | INFO     | fitting pss+swap vs Time
[2025-11-06 03:30:34] 2025-11-06 10:29:36,511 | INFO     | sum of square deviations: 1518168.0
[2025-11-06 03:30:34] 2025-11-06 10:29:36,511 | INFO     | sum of deviations: -80384885.00000001
[2025-11-06 03:30:34] 2025-11-06 10:29:36,511 | INFO     | mean x: 1762424336.0
[2025-11-06 03:30:34] 2025-11-06 10:29:36,511 | INFO     | mean y: 2553680.470588235
[2025-11-06 03:30:34] 2025-11-06 10:29:36,511 | INFO     | intersect: 93320472099.61879
[2025-11-06 03:30:34] 2025-11-06 10:29:36,511 | INFO     | chi2: 0.0051454235298744565
[2025-11-06 03:30:34] 2025-11-06 10:29:36,511 | INFO     | current memory leak: -52.95 B/s (using 17 data points, chi2=0.01)
[2025-11-06 03:30:34] 2025-11-06 10:29:36,512 | INFO     | could have reported an average CPU frequency of 4045 MHz (4 samples)
[2025-11-06 03:30:34] 2025-11-06 10:29:36,512 | INFO     | ..............................
[2025-11-06 03:30:34] 2025-11-06 10:29:36,512 | INFO     | . Timing measurements:
[2025-11-06 03:30:34] 2025-11-06 10:29:36,512 | INFO     | . get job = 0 s
[2025-11-06 03:30:34] 2025-11-06 10:29:36,512 | INFO     | . initial setup = 2 s
[2025-11-06 03:30:34] 2025-11-06 10:29:36,512 | INFO     | . payload setup = 2 s
[2025-11-06 03:30:34] 2025-11-06 10:29:36,512 | INFO     | . stage-in = 0 s
[2025-11-06 03:30:34] 2025-11-06 10:29:36,512 | INFO     | . payload execution = 1421 s
[2025-11-06 03:30:34] 2025-11-06 10:29:36,512 | INFO     | . stage-out = 0 s
[2025-11-06 03:30:34] 2025-11-06 10:29:36,512 | INFO     | . log creation = 0 s
[2025-11-06 03:30:34] 2025-11-06 10:29:36,512 | INFO     | ..............................
[2025-11-06 03:30:34] 2025-11-06 10:29:36,791 | INFO     | 
[2025-11-06 03:30:34] 2025-11-06 10:29:36,791 | INFO     | job summary report
[2025-11-06 03:30:34] 2025-11-06 10:29:36,791 | INFO     | --------------------------------------------------
[2025-11-06 03:30:34] 2025-11-06 10:29:36,791 | INFO     | PanDA job id: 6873882126
[2025-11-06 03:30:34] 2025-11-06 10:29:36,791 | INFO     | task id: 47240594
[2025-11-06 03:30:34] 2025-11-06 10:29:36,791 | INFO     | errors: (none)
[2025-11-06 03:30:34] 2025-11-06 10:29:36,791 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-06 03:30:34] 2025-11-06 10:29:36,791 | INFO     | pilot state: finished 
[2025-11-06 03:30:34] 2025-11-06 10:29:36,791 | INFO     | transexitcode: 0
[2025-11-06 03:30:34] 2025-11-06 10:29:36,791 | INFO     | exeerrorcode: 0
[2025-11-06 03:30:34] 2025-11-06 10:29:36,791 | INFO     | exeerrordiag: 
[2025-11-06 03:30:34] 2025-11-06 10:29:36,791 | INFO     | exitcode: 0
[2025-11-06 03:30:34] 2025-11-06 10:29:36,791 | INFO     | exitmsg: OK
[2025-11-06 03:30:34] 2025-11-06 10:29:36,791 | INFO     | cpuconsumptiontime: 10320 s
[2025-11-06 03:30:34] 2025-11-06 10:29:36,791 | INFO     | nevents: 400
[2025-11-06 03:30:34] 2025-11-06 10:29:36,791 | INFO     | neventsw: 0
[2025-11-06 03:30:34] 2025-11-06 10:29:36,792 | INFO     | pid: 690192
[2025-11-06 03:30:34] 2025-11-06 10:29:36,792 | INFO     | pgrp: 690192
[2025-11-06 03:30:34] 2025-11-06 10:29:36,792 | INFO     | corecount: 8
[2025-11-06 03:30:34] 2025-11-06 10:29:36,792 | INFO     | event service: False
[2025-11-06 03:30:34] 2025-11-06 10:29:36,792 | INFO     | sizes: {0: 2348874, 2: 2349250, 11: 2349278, 1427: 2373996, 1428: 2383063, 1431: 2383063, 1438: 2383385}
[2025-11-06 03:30:34] 2025-11-06 10:29:36,792 | INFO     | --------------------------------------------------
[2025-11-06 03:30:34] 2025-11-06 10:29:36,792 | INFO     | 
[2025-11-06 03:30:34] 2025-11-06 10:29:36,792 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2025-11-06 03:30:34] 2025-11-06 10:29:36,801 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-06 03:30:34] 2025-11-06 10:29:36,801 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-06 03:30:34] 2025-11-06 10:29:36,801 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-06 03:30:34] 2025-11-06 10:29:36,801 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-06 03:30:34] 2025-11-06 10:29:36,801 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-06 03:30:34] 2025-11-06 10:29:36,801 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-06 03:30:34] 2025-11-06 10:29:36,801 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-06 03:30:34] 2025-11-06 10:29:36,801 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-06 03:30:34] 2025-11-06 10:29:36,801 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-06 03:30:34] 2025-11-06 10:29:36,801 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-06 03:30:34] 2025-11-06 10:29:36,801 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-06 03:30:34] 2025-11-06 10:29:36,801 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-06 03:30:34] 2025-11-06 10:29:36,801 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-06 03:30:34] 2025-11-06 10:29:36,801 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-06 03:30:34] 2025-11-06 10:29:36,801 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-06 03:30:34] 2025-11-06 10:29:36,801 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-06 03:30:34] 2025-11-06 10:29:36,801 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-06 03:30:34] 2025-11-06 10:29:36,801 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-06 03:30:34] 2025-11-06 10:29:36,801 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-06 03:30:34] 2025-11-06 10:29:36,801 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-06 03:30:34] 2025-11-06 10:29:36,801 | INFO     | job 6873882126 has completed (purged errors)
[2025-11-06 03:30:34] 2025-11-06 10:29:36,802 | INFO     | overall cleanup function is called
[2025-11-06 03:30:34] 2025-11-06 10:29:37,808 | INFO     | --- collectZombieJob: --- 10, [690192]
[2025-11-06 03:30:34] 2025-11-06 10:29:37,808 | INFO     | zombie collector waiting for pid 690192
[2025-11-06 03:30:34] 2025-11-06 10:29:37,808 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-06 03:30:34] 2025-11-06 10:29:37,808 | INFO     | collected zombie processes
[2025-11-06 03:30:34] 2025-11-06 10:29:37,808 | INFO     | will attempt to kill all subprocesses of pid=690192
[2025-11-06 03:30:34] 2025-11-06 10:29:37,846 | INFO     | process IDs to be killed: [690192] (in reverse order)
[2025-11-06 03:30:34] 2025-11-06 10:29:37,869 | WARNING  | found no corresponding commands to process id(s)
[2025-11-06 03:30:34] 2025-11-06 10:29:37,869 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-06 03:30:34] 2025-11-06 10:29:37,871 | INFO     | did not find any defunct processes belonging to 690192
[2025-11-06 03:30:34] 2025-11-06 10:29:37,872 | INFO     | did not find any defunct processes belonging to 690192
[2025-11-06 03:30:34] 2025-11-06 10:29:37,872 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-06 03:30:34] 2025-11-06 10:29:37,872 | INFO     | ready for new job
[2025-11-06 03:30:34] 2025-11-06 10:29:37,872 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-06 03:30:34] 2025-11-06 10:29:37,873 | INFO     | ***************************************
[2025-11-06 03:30:34] 2025-11-06 10:29:37,873 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-06 03:30:34] 2025-11-06 10:29:37,873 | INFO     | ***************************************
[2025-11-06 03:30:34] 2025-11-06 10:29:37,873 | INFO     | 
[2025-11-06 03:30:34] 2025-11-06 10:29:37,873 | INFO     | architecture information:
[2025-11-06 03:30:34] 2025-11-06 10:29:37,874 | INFO     | executing command: cat /etc/os-release
[2025-11-06 03:30:34] 2025-11-06 10:29:37,880 | INFO     | cat /etc/os-release:
[2025-11-06 03:30:34] NAME="CentOS Linux"
[2025-11-06 03:30:34] VERSION="7 (Core)"
[2025-11-06 03:30:34] ID="centos"
[2025-11-06 03:30:34] ID_LIKE="rhel fedora"
[2025-11-06 03:30:34] VERSION_ID="7"
[2025-11-06 03:30:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-06 03:30:34] ANSI_COLOR="0;31"
[2025-11-06 03:30:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-06 03:30:34] HOME_URL="https://www.centos.org/"
[2025-11-06 03:30:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-06 03:30:34] 
[2025-11-06 03:30:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-06 03:30:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-06 03:30:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-06 03:30:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-06 03:30:34] 
[2025-11-06 03:30:34] 2025-11-06 10:29:37,880 | INFO     | ***************************************
[2025-11-06 03:30:34] 2025-11-06 10:29:38,382 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2025-11-06 03:30:34] 2025-11-06 10:29:38,390 | INFO     | sufficient remaining disk space (678669844480 B)
[2025-11-06 03:30:34] 2025-11-06 10:29:38,390 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-06 03:30:34] 2025-11-06 10:29:38,390 | INFO     | current server update state: UPDATING_FINAL
[2025-11-06 03:30:34] 2025-11-06 10:29:38,390 | INFO     | update_server=False
[2025-11-06 03:30:34] 2025-11-06 10:29:38,390 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-06 03:30:34] 2025-11-06 10:29:38,390 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-06 03:30:34] 2025-11-06 10:29:38,390 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-06 03:30:34] 2025-11-06 10:29:38,515 | INFO     | all job control threads have been joined
[2025-11-06 03:30:34] 2025-11-06 10:29:39,019 | INFO     | all payload control threads have been joined
[2025-11-06 03:30:34] 2025-11-06 10:29:39,331 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-06 03:30:34] 2025-11-06 10:29:39,331 | INFO     | aborting loop
[2025-11-06 03:30:34] 2025-11-06 10:29:39,393 | INFO     | [job] retrieve thread has finished
[2025-11-06 03:30:34] 2025-11-06 10:29:39,395 | INFO     | [job] queue monitor thread has finished
[2025-11-06 03:30:34] 2025-11-06 10:29:39,435 | INFO     | [job] create_data_payload thread has finished
[2025-11-06 03:30:34] 2025-11-06 10:29:39,462 | INFO     | all data control threads have been joined
[2025-11-06 03:30:34] 2025-11-06 10:29:39,491 | INFO     | [payload] validate_pre thread has finished
[2025-11-06 03:30:34] 2025-11-06 10:29:39,520 | INFO     | [job] control thread has finished
[2025-11-06 03:30:34] 2025-11-06 10:29:39,521 | INFO     | [data] copytool_in thread has finished
[2025-11-06 03:30:34] 2025-11-06 10:29:39,688 | INFO     | [payload] failed_post thread has finished
[2025-11-06 03:30:34] 2025-11-06 10:29:40,025 | INFO     | [payload] control thread has finished
[2025-11-06 03:30:34] 2025-11-06 10:29:40,173 | INFO     | [payload] validate_post thread has finished
[2025-11-06 03:30:34] 2025-11-06 10:29:40,284 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-06 03:30:34] 2025-11-06 10:29:40,334 | INFO     | [job] job monitor thread has finished
[2025-11-06 03:30:34] 2025-11-06 10:29:40,395 | INFO     | [data] copytool_out thread has finished
[2025-11-06 03:30:34] 2025-11-06 10:29:40,467 | INFO     | [data] control thread has finished
[2025-11-06 03:30:34] 2025-11-06 10:29:40,550 | INFO     | [payload] execute_payloads thread has finished
[2025-11-06 03:30:34] 2025-11-06 10:29:40,878 | INFO     | [job] validate thread has finished
[2025-11-06 03:30:34] 2025-11-06 10:29:44,289 | INFO     | [data] queue_monitor thread has finished
[2025-11-06 03:30:34] 2025-11-06 10:29:49,163 | INFO     | job.realtimelogging is not enabled
[2025-11-06 03:30:34] 2025-11-06 10:29:50,168 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-06 03:30:34] 2025-11-06 10:30:09,115 | INFO     | PID=683535 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-06 03:30:34] 2025-11-06 10:30:09,115 | INFO     | .. there are 2 such processes running
[2025-11-06 03:30:34] 2025-11-06 10:30:09,115 | INFO     | found 0 job(s) in 20 queues
[2025-11-06 03:30:34] 2025-11-06 10:30:09,115 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-06 03:30:34] 2025-11-06 10:30:09,115 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-06 03:30:34] 2025-11-06 10:30:28,425 | INFO     | [monitor] cgroup control has ended
[2025-11-06 03:30:34] 2025-11-06 10:30:29,531 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 137875191826240)>', '<ExcThread(monitor, started 137874724882176)>']
[2025-11-06 03:30:34] 2025-11-06 10:30:30,220 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-06 03:30:34] 2025-11-06 10:30:30,220 | INFO     | [monitor] control thread has ended
[2025-11-06 03:30:34] 2025-11-06 10:30:34,556 | INFO     | all workflow threads have been joined
[2025-11-06 03:30:34] 2025-11-06 10:30:34,556 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-06 03:30:34] 2025-11-06 10:30:34,556 | INFO     | traces error code: 0
[2025-11-06 03:30:34] 2025-11-06 10:30:34,556 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-06 03:30:34] 2025-11-06 10:30:34,592 [wrapper] ==== pilot stdout END ====
[2025-11-06 03:30:34] 2025-11-06 10:30:34,593 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-06 03:30:34] 2025-11-06 10:30:34,594 [wrapper] pilotpid: 683535
[2025-11-06 03:30:34] 2025-11-06 10:30:34,595 [wrapper] Pilot exit status: 0
[2025-11-06 03:30:34] 2025-11-06 10:30:34,599 [wrapper] pandaids: 6873882126
[2025-11-06 03:30:34] 2025-11-06 10:30:34,613 [wrapper] cleanup supervisor_pilot  716653 683536
[2025-11-06 03:30:34] 2025-11-06 10:30:34,614 [wrapper] Test setup, not cleaning
[2025-11-06 03:30:34] 2025-11-06 10:30:34,615 [wrapper] apfmon messages muted
[2025-11-06 03:30:34] 2025-11-06 10:30:34,617 [wrapper] ==== wrapper stdout END ====
[2025-11-06 03:30:34] 2025-11-06 10:30:34,618 [wrapper] ==== wrapper stderr END ====
[2025-11-06 03:30:34]  *** Error codes and diagnostics ***
[2025-11-06 03:30:34]     "exeErrorCode": 0,
[2025-11-06 03:30:34]     "exeErrorDiag": "",
[2025-11-06 03:30:34]     "pilotErrorCode": 0,
[2025-11-06 03:30:34]     "pilotErrorDiag": "",
[2025-11-06 03:30:34]  *** Listing of results directory ***
[2025-11-06 03:30:34] total 454404
[2025-11-06 03:30:34] -rw-r--r-- 1 boinc boinc      5112 Nov  6 01:41 queuedata.json
[2025-11-06 03:30:34] -rw-r--r-- 1 boinc boinc    576529 Nov  6 01:41 pilot3.tar.gz
[2025-11-06 03:30:34] -rwx------ 1 boinc boinc     36292 Nov  6 01:41 runpilot2-wrapper.sh
[2025-11-06 03:30:34] -rw-r--r-- 1 boinc boinc       100 Nov  6 03:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-06 03:30:34] -rwxr-xr-x 1 boinc boinc      7986 Nov  6 03:05 run_atlas
[2025-11-06 03:30:34] -rw-r--r-- 1 boinc boinc       105 Nov  6 03:05 job.xml
[2025-11-06 03:30:34] -rw-r--r-- 2 boinc boinc 277867438 Nov  6 03:05 EVNT.47240566._000004.pool.root.1
[2025-11-06 03:30:34] -rw-r--r-- 2 boinc boinc     15120 Nov  6 03:05 start_atlas.sh
[2025-11-06 03:30:34] drwxrwx--x 2 boinc boinc      4096 Nov  6 03:05 shared
[2025-11-06 03:30:34] -rw-r--r-- 2 boinc boinc    589951 Nov  6 03:05 input.tar.gz
[2025-11-06 03:30:34] -rw-r--r-- 1 boinc boinc      9912 Nov  6 03:05 init_data.xml
[2025-11-06 03:30:34] -rw-r--r-- 1 boinc boinc         0 Nov  6 03:05 boinc_lockfile
[2025-11-06 03:30:34] -rw-r--r-- 1 boinc boinc      2599 Nov  6 03:05 pandaJob.out
[2025-11-06 03:30:34] -rw------- 1 boinc boinc    985767 Nov  6 03:05 agis_schedconf.cvmfs.json
[2025-11-06 03:30:34] -rw------- 1 boinc boinc   1560632 Nov  6 03:05 agis_ddmendpoints.agis.ALL.json
[2025-11-06 03:30:34] drwx------ 5 boinc boinc      4096 Nov  6 03:05 pilot3
[2025-11-06 03:30:34] -rw------- 1 boinc boinc 182416650 Nov  6 03:29 HITS.47240594._000210.pool.root.1
[2025-11-06 03:30:34] -rw------- 1 boinc boinc      1019 Nov  6 03:29 memory_monitor_summary.json
[2025-11-06 03:30:34] -rw------- 1 boinc boinc    274791 Nov  6 03:29 log.47240594._000210.job.log.tgz.1
[2025-11-06 03:30:34] -rw------- 1 boinc boinc        95 Nov  6 03:29 pilot_heartbeat.json
[2025-11-06 03:30:34] -rw-r--r-- 1 boinc boinc       529 Nov  6 03:29 boinc_task_state.xml
[2025-11-06 03:30:34] -rw------- 1 boinc boinc      7719 Nov  6 03:29 heartbeat.json
[2025-11-06 03:30:34] -rw-r--r-- 1 boinc boinc        27 Nov  6 03:30 wrapper_checkpoint.txt
[2025-11-06 03:30:34] -rw-r--r-- 1 boinc boinc      8192 Nov  6 03:30 boinc_mmap_file
[2025-11-06 03:30:34] -rw------- 1 boinc boinc      4902 Nov  6 03:30 pilotlog.txt
[2025-11-06 03:30:34] -rw------- 1 boinc boinc    258459 Nov  6 03:30 log.47240594._000210.job.log.1
[2025-11-06 03:30:34] -rw------- 1 boinc boinc       357 Nov  6 03:30 output.list
[2025-11-06 03:30:34] -rw-r--r-- 1 boinc boinc       620 Nov  6 03:30 runtime_log
[2025-11-06 03:30:34] -rw------- 1 boinc boinc    552960 Nov  6 03:30 result.tar.gz
[2025-11-06 03:30:34] -rw-r--r-- 1 boinc boinc      8786 Nov  6 03:30 runtime_log.err
[2025-11-06 03:30:34] -rw------- 1 boinc boinc       651 Nov  6 03:30 NOSLDm3jAb8n9Rq4apOajLDm4fhM0noT9bVof3QYDmCXqMDmQQzlyn.diag
[2025-11-06 03:30:34] -rw-r--r-- 1 boinc boinc     22704 Nov  6 03:30 stderr.txt
[2025-11-06 03:30:34] HITS file was successfully produced:
[2025-11-06 03:30:34] -rw------- 1 boinc boinc 182416650 Nov  6 03:29 shared/HITS.pool.root.1
[2025-11-06 03:30:34]  *** Contents of shared directory: ***
[2025-11-06 03:30:34] total 450644
[2025-11-06 03:30:34] -rw-r--r-- 2 boinc boinc 277867438 Nov  6 03:05 ATLAS.root_0
[2025-11-06 03:30:34] -rw-r--r-- 2 boinc boinc     15120 Nov  6 03:05 start_atlas.sh
[2025-11-06 03:30:34] -rw-r--r-- 2 boinc boinc    589951 Nov  6 03:05 input.tar.gz
[2025-11-06 03:30:34] -rw------- 1 boinc boinc 182416650 Nov  6 03:29 HITS.pool.root.1
[2025-11-06 03:30:34] -rw------- 1 boinc boinc    552960 Nov  6 03:30 result.tar.gz
03:30:36 (679675): run_atlas exited; CPU time 10325.758136
03:30:36 (679675): called boinc_finish(0)

</stderr_txt>
]]>

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