Stderr output

<core_client_version>7.24.5</core_client_version>
<![CDATA[
<stderr_txt>
23:48:33 (531783): wrapper (7.7.26015): starting
23:48:33 (531783): wrapper: running run_atlas (--nthreads 8)
[2025-11-05 23:48:33] Arguments: --nthreads 8
[2025-11-05 23:48:33] Threads: 8
[2025-11-05 23:48:33] Checking for CVMFS
[2025-11-05 23:48:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-05 23:48:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-05 23:48:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-05 23:48:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-05 23:48:33] 2.13.3.0 442731 113 47088 152523 2 188 1644428 4096001 922 130560 0 238931 97.251 647473 802 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-05 23:48:33] CVMFS is ok
[2025-11-05 23:48:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-05 23:48:33] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-05 23:48:33] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-05 23:48:33] Further information can be found at the LHC@home message board.
[2025-11-05 23:48:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-05 23:48:33] Checking for apptainer binary...
[2025-11-05 23:48:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-05 23:48:33] Running /usr/bin/apptainer --version
[2025-11-05 23:48:33] apptainer version 1.4.4
[2025-11-05 23:48:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-05 23:48:33] garage
[2025-11-05 23:48:33] apptainer works
[2025-11-05 23:48:33] Set ATHENA_PROC_NUMBER=8
[2025-11-05 23:48:33] Set ATHENA_CORE_NUMBER=8
[2025-11-05 23:48:33] Starting ATLAS job with PandaID=6864335320
[2025-11-05 23:48:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-06 00:23:55]  *** The last 200 lines of the pilot log: ***
[2025-11-06 00:23:55]  is_tar=False
[2025-11-06 00:23:55]  lfn=log.47081490._007753.job.log.tgz.1
[2025-11-06 00:23:55]  mtime=0
[2025-11-06 00:23:55]  protocol_id=None
[2025-11-06 00:23:55]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-11-06 00:23:55]  replicas=None
[2025-11-06 00:23:55]  scope=mc23_13p6TeV
[2025-11-06 00:23:55]  status=None
[2025-11-06 00:23:55]  status_code=0
[2025-11-06 00:23:55]  storage_token=
[2025-11-06 00:23:55]  surl=/var/lib/boinc-client/slots/1/PanDA_Pilot-6864335320/log.47081490._007753.job.log.tgz.1
[2025-11-06 00:23:55]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/46/8e/log.47081490._007753.job.log.tgz.1
[2025-11-06 00:23:55]  workdir=None
[2025-11-06 00:23:55] ]
[2025-11-06 00:23:55] 2025-11-06 07:22:44,508 | INFO     | transferring file log.47081490._007753.job.log.tgz.1 from /var/lib/boinc-client/slots/1/PanDA_Pilot-6864335320/log.47081490._007753.job.log.tgz.1 to /var/lib/boinc
[2025-11-06 00:23:55] 2025-11-06 07:22:44,508 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/1/PanDA_Pilot-6864335320/log.47081490._007753.job.log.tgz.1 /var/lib/boinc-client/slots/1/log.470814
[2025-11-06 00:23:55] 2025-11-06 07:22:44,516 | INFO     | adding to output.list: log.47081490._007753.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/46/8e/log.47081490._007753.job.log.tg
[2025-11-06 00:23:55] 2025-11-06 07:22:44,516 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-11-06 00:23:55] 2025-11-06 07:22:44,516 | INFO     | summary of transferred files:
[2025-11-06 00:23:55] 2025-11-06 07:22:44,516 | INFO     |  -- lfn=log.47081490._007753.job.log.tgz.1, status_code=0, status=transferred
[2025-11-06 00:23:55] 2025-11-06 07:22:44,516 | INFO     | stage-out finished correctly
[2025-11-06 00:23:55] 2025-11-06 07:22:46,248 | INFO     | time since job start (2040s) is within the limit (172800.0s)
[2025-11-06 00:23:55] 2025-11-06 07:22:46,788 | WARNING  | process 542286 can no longer be monitored (due to stat problems) - aborting
[2025-11-06 00:23:55] 2025-11-06 07:22:46,788 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6864335320/memory_monitor_summary.json (trf name=prmon)
[2025-11-06 00:23:55] 2025-11-06 07:22:46,822 | INFO     | number of running child processes to parent process 542286: 1
[2025-11-06 00:23:55] 2025-11-06 07:22:46,822 | INFO     | maximum number of monitored processes: 6
[2025-11-06 00:23:55] 2025-11-06 07:22:47,971 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-11-06 00:23:55] 2025-11-06 07:22:47,993 | INFO     | job 6864335320 has state=finished
[2025-11-06 00:23:55] 2025-11-06 07:22:47,993 | INFO     | preparing for final server update for job 6864335320 in state='finished'
[2025-11-06 00:23:55] 2025-11-06 07:22:47,993 | INFO     | this job has now completed (state=finished)
[2025-11-06 00:23:55] 2025-11-06 07:22:47,993 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-06 00:23:55] 2025-11-06 07:22:47,993 | INFO     | log transfer has been attempted: DONE
[2025-11-06 00:23:55] 2025-11-06 07:22:47,993 | INFO     | job 6864335320 has finished - writing final server update
[2025-11-06 00:23:55] 2025-11-06 07:22:47,993 | INFO     | total number of processed events: 400 (read)
[2025-11-06 00:23:55] 2025-11-06 07:22:47,993 | INFO     | executing command: lscpu
[2025-11-06 00:23:55] 2025-11-06 07:22:48,006 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-06 00:23:55] 2025-11-06 07:22:48,253 | INFO     | time since job start (2042s) is within the limit (172800.0s)
[2025-11-06 00:23:55] 2025-11-06 07:22:49,273 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-06 00:23:55] 2025-11-06 07:22:49,274 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3248.2109375
[2025-11-06 00:23:55] 2025-11-06 07:22:49,276 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6864335320/memory_monitor_summary.json (trf name=prmon)
[2025-11-06 00:23:55] 2025-11-06 07:22:49,276 | INFO     | extracted standard info from prmon json
[2025-11-06 00:23:55] 2025-11-06 07:22:49,276 | INFO     | extracted standard memory fields from prmon json
[2025-11-06 00:23:55] 2025-11-06 07:22:49,276 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-06 00:23:55] 2025-11-06 07:22:49,276 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-06 00:23:55] 2025-11-06 07:22:49,276 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-06 00:23:55] 2025-11-06 07:22:49,277 | INFO     | fitting pss+swap vs Time
[2025-11-06 00:23:55] 2025-11-06 07:22:49,277 | INFO     | sum of square deviations: 5441962.5
[2025-11-06 00:23:55] 2025-11-06 07:22:49,277 | INFO     | sum of deviations: 1320480145.4999998
[2025-11-06 00:23:55] 2025-11-06 07:22:49,277 | INFO     | mean x: 1762412814.5
[2025-11-06 00:23:55] 2025-11-06 07:22:49,277 | INFO     | mean y: 2833738.269230769
[2025-11-06 00:23:55] 2025-11-06 07:22:49,277 | INFO     | -- intersect: -427642731574.24884
[2025-11-06 00:23:55] 2025-11-06 07:22:49,277 | INFO     | intersect: -427642731574.24884
[2025-11-06 00:23:55] 2025-11-06 07:22:49,277 | INFO     | chi2: 0.011288574011809735
[2025-11-06 00:23:55] 2025-11-06 07:22:49,277 | INFO     | -- intersect: -427642731574.24884
[2025-11-06 00:23:55] 2025-11-06 07:22:49,277 | INFO     | current memory leak: 242.65 B/s (using 26 data points, chi2=0.01)
[2025-11-06 00:23:55] 2025-11-06 07:22:49,277 | INFO     | could have reported an average CPU frequency of 3997 MHz (5 samples)
[2025-11-06 00:23:55] 2025-11-06 07:22:49,277 | INFO     | ..............................
[2025-11-06 00:23:55] 2025-11-06 07:22:49,277 | INFO     | . Timing measurements:
[2025-11-06 00:23:55] 2025-11-06 07:22:49,277 | INFO     | . get job = 0 s
[2025-11-06 00:23:55] 2025-11-06 07:22:49,277 | INFO     | . initial setup = 6 s
[2025-11-06 00:23:55] 2025-11-06 07:22:49,277 | INFO     | . payload setup = 4 s
[2025-11-06 00:23:55] 2025-11-06 07:22:49,277 | INFO     | . stage-in = 0 s
[2025-11-06 00:23:55] 2025-11-06 07:22:49,277 | INFO     | . payload execution = 2015 s
[2025-11-06 00:23:55] 2025-11-06 07:22:49,277 | INFO     | . stage-out = 0 s
[2025-11-06 00:23:55] 2025-11-06 07:22:49,277 | INFO     | . log creation = 0 s
[2025-11-06 00:23:55] 2025-11-06 07:22:49,277 | INFO     | ..............................
[2025-11-06 00:23:55] 2025-11-06 07:22:49,495 | INFO     | 
[2025-11-06 00:23:55] 2025-11-06 07:22:49,495 | INFO     | job summary report
[2025-11-06 00:23:55] 2025-11-06 07:22:49,495 | INFO     | --------------------------------------------------
[2025-11-06 00:23:55] 2025-11-06 07:22:49,495 | INFO     | PanDA job id: 6864335320
[2025-11-06 00:23:55] 2025-11-06 07:22:49,495 | INFO     | task id: 47081490
[2025-11-06 00:23:55] 2025-11-06 07:22:49,495 | INFO     | errors: (none)
[2025-11-06 00:23:55] 2025-11-06 07:22:49,495 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-06 00:23:55] 2025-11-06 07:22:49,495 | INFO     | pilot state: finished 
[2025-11-06 00:23:55] 2025-11-06 07:22:49,495 | INFO     | transexitcode: 0
[2025-11-06 00:23:55] 2025-11-06 07:22:49,496 | INFO     | exeerrorcode: 0
[2025-11-06 00:23:55] 2025-11-06 07:22:49,496 | INFO     | exeerrordiag: 
[2025-11-06 00:23:55] 2025-11-06 07:22:49,496 | INFO     | exitcode: 0
[2025-11-06 00:23:55] 2025-11-06 07:22:49,496 | INFO     | exitmsg: OK
[2025-11-06 00:23:55] 2025-11-06 07:22:49,496 | INFO     | cpuconsumptiontime: 14665 s
[2025-11-06 00:23:55] 2025-11-06 07:22:49,496 | INFO     | nevents: 400
[2025-11-06 00:23:55] 2025-11-06 07:22:49,496 | INFO     | neventsw: 0
[2025-11-06 00:23:55] 2025-11-06 07:22:49,496 | INFO     | pid: 542286
[2025-11-06 00:23:55] 2025-11-06 07:22:49,496 | INFO     | pgrp: 542286
[2025-11-06 00:23:55] 2025-11-06 07:22:49,496 | INFO     | corecount: 8
[2025-11-06 00:23:55] 2025-11-06 07:22:49,496 | INFO     | event service: False
[2025-11-06 00:23:55] 2025-11-06 07:22:49,496 | INFO     | sizes: {0: 2348053, 1: 2348916, 4: 2349178, 11: 2349206, 2022: 2374246, 2024: 2383258, 2027: 2383442, 2029: 2383668}
[2025-11-06 00:23:55] 2025-11-06 07:22:49,496 | INFO     | --------------------------------------------------
[2025-11-06 00:23:55] 2025-11-06 07:22:49,496 | INFO     | 
[2025-11-06 00:23:55] 2025-11-06 07:22:49,496 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2025-11-06 00:23:55] 2025-11-06 07:22:49,505 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-06 00:23:55] 2025-11-06 07:22:49,505 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-06 00:23:55] 2025-11-06 07:22:49,505 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-06 00:23:55] 2025-11-06 07:22:49,505 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-06 00:23:55] 2025-11-06 07:22:49,505 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-06 00:23:55] 2025-11-06 07:22:49,505 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-06 00:23:55] 2025-11-06 07:22:49,505 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-06 00:23:55] 2025-11-06 07:22:49,505 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-06 00:23:55] 2025-11-06 07:22:49,505 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-06 00:23:55] 2025-11-06 07:22:49,505 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-06 00:23:55] 2025-11-06 07:22:49,505 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-06 00:23:55] 2025-11-06 07:22:49,505 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-06 00:23:55] 2025-11-06 07:22:49,505 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-06 00:23:55] 2025-11-06 07:22:49,505 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-06 00:23:55] 2025-11-06 07:22:49,505 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-06 00:23:55] 2025-11-06 07:22:49,505 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-06 00:23:55] 2025-11-06 07:22:49,505 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-06 00:23:55] 2025-11-06 07:22:49,505 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-06 00:23:55] 2025-11-06 07:22:49,505 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-06 00:23:55] 2025-11-06 07:22:49,505 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-06 00:23:55] 2025-11-06 07:22:49,505 | INFO     | job 6864335320 has completed (purged errors)
[2025-11-06 00:23:55] 2025-11-06 07:22:49,505 | INFO     | overall cleanup function is called
[2025-11-06 00:23:55] 2025-11-06 07:22:50,510 | INFO     | --- collectZombieJob: --- 10, [542286]
[2025-11-06 00:23:55] 2025-11-06 07:22:50,510 | INFO     | zombie collector waiting for pid 542286
[2025-11-06 00:23:55] 2025-11-06 07:22:50,510 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-06 00:23:55] 2025-11-06 07:22:50,510 | INFO     | collected zombie processes
[2025-11-06 00:23:55] 2025-11-06 07:22:50,510 | INFO     | will attempt to kill all subprocesses of pid=542286
[2025-11-06 00:23:55] 2025-11-06 07:22:50,545 | INFO     | process IDs to be killed: [542286] (in reverse order)
[2025-11-06 00:23:55] 2025-11-06 07:22:50,565 | WARNING  | found no corresponding commands to process id(s)
[2025-11-06 00:23:55] 2025-11-06 07:22:50,565 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-06 00:23:55] 2025-11-06 07:22:50,567 | INFO     | did not find any defunct processes belonging to 542286
[2025-11-06 00:23:55] 2025-11-06 07:22:50,568 | INFO     | did not find any defunct processes belonging to 542286
[2025-11-06 00:23:55] 2025-11-06 07:22:50,568 | INFO     | ready for new job
[2025-11-06 00:23:55] 2025-11-06 07:22:50,568 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-06 00:23:55] 2025-11-06 07:22:50,568 | INFO     | ***************************************
[2025-11-06 00:23:55] 2025-11-06 07:22:50,568 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-11-06 00:23:55] 2025-11-06 07:22:50,568 | INFO     | ***************************************
[2025-11-06 00:23:55] 2025-11-06 07:22:50,568 | INFO     | 
[2025-11-06 00:23:55] 2025-11-06 07:22:50,569 | INFO     | architecture information:
[2025-11-06 00:23:55] 2025-11-06 07:22:50,569 | INFO     | executing command: cat /etc/os-release
[2025-11-06 00:23:55] 2025-11-06 07:22:50,575 | INFO     | cat /etc/os-release:
[2025-11-06 00:23:55] NAME="CentOS Linux"
[2025-11-06 00:23:55] VERSION="7 (Core)"
[2025-11-06 00:23:55] ID="centos"
[2025-11-06 00:23:55] ID_LIKE="rhel fedora"
[2025-11-06 00:23:55] VERSION_ID="7"
[2025-11-06 00:23:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-06 00:23:55] ANSI_COLOR="0;31"
[2025-11-06 00:23:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-06 00:23:55] HOME_URL="https://www.centos.org/"
[2025-11-06 00:23:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-06 00:23:55] 
[2025-11-06 00:23:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-06 00:23:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-06 00:23:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-06 00:23:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-06 00:23:55] 
[2025-11-06 00:23:55] 2025-11-06 07:22:50,576 | INFO     | ***************************************
[2025-11-06 00:23:55] 2025-11-06 07:22:51,078 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2025-11-06 00:23:55] 2025-11-06 07:22:51,085 | INFO     | sufficient remaining disk space (679670185984 B)
[2025-11-06 00:23:55] 2025-11-06 07:22:51,085 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-06 00:23:55] 2025-11-06 07:22:51,085 | INFO     | current server update state: UPDATING_FINAL
[2025-11-06 00:23:55] 2025-11-06 07:22:51,085 | INFO     | update_server=False
[2025-11-06 00:23:55] 2025-11-06 07:22:51,085 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-06 00:23:55] 2025-11-06 07:22:51,085 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-06 00:23:55] 2025-11-06 07:22:51,085 | INFO     | aborting loop
[2025-11-06 00:23:55] 2025-11-06 07:22:51,085 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-06 00:23:55] 2025-11-06 07:22:51,969 | INFO     | all payload control threads have been joined
[2025-11-06 00:23:55] 2025-11-06 07:22:52,015 | INFO     | all data control threads have been joined
[2025-11-06 00:23:55] 2025-11-06 07:22:52,090 | INFO     | [job] retrieve thread has finished
[2025-11-06 00:23:55] 2025-11-06 07:22:52,090 | INFO     | [job] queue monitor thread has finished
[2025-11-06 00:23:55] 2025-11-06 07:22:52,091 | INFO     | [job] job monitor thread has finished
[2025-11-06 00:23:55] 2025-11-06 07:22:52,211 | INFO     | [payload] failed_post thread has finished
[2025-11-06 00:23:55] 2025-11-06 07:22:52,211 | INFO     | all job control threads have been joined
[2025-11-06 00:23:55] 2025-11-06 07:22:52,221 | INFO     | [job] create_data_payload thread has finished
[2025-11-06 00:23:55] 2025-11-06 07:22:52,280 | INFO     | [payload] validate_pre thread has finished
[2025-11-06 00:23:55] 2025-11-06 07:22:52,507 | INFO     | [data] copytool_in thread has finished
[2025-11-06 00:23:55] 2025-11-06 07:22:52,546 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-06 00:23:55] 2025-11-06 07:22:52,961 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-06 00:23:55] 2025-11-06 07:22:52,973 | INFO     | [payload] control thread has finished
[2025-11-06 00:23:55] 2025-11-06 07:22:53,020 | INFO     | [data] control thread has finished
[2025-11-06 00:23:55] 2025-11-06 07:22:53,050 | INFO     | [payload] execute_payloads thread has finished
[2025-11-06 00:23:55] 2025-11-06 07:22:53,216 | INFO     | [job] control thread has finished
[2025-11-06 00:23:55] 2025-11-06 07:22:53,577 | INFO     | [job] validate thread has finished
[2025-11-06 00:23:55] 2025-11-06 07:22:53,664 | INFO     | [payload] validate_post thread has finished
[2025-11-06 00:23:55] 2025-11-06 07:22:53,998 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-06 00:23:55] 2025-11-06 07:22:54,551 | INFO     | [data] copytool_out thread has finished
[2025-11-06 00:23:55] 2025-11-06 07:22:58,004 | INFO     | [data] queue_monitor thread has finished
[2025-11-06 00:23:55] 2025-11-06 07:23:21,360 | INFO     | PID=535639 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-06 00:23:55] 2025-11-06 07:23:21,360 | INFO     | found 0 job(s) in 20 queues
[2025-11-06 00:23:55] 2025-11-06 07:23:21,360 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-06 00:23:55] 2025-11-06 07:23:21,360 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-06 00:23:55] 2025-11-06 07:23:48,743 | INFO     | [monitor] cgroup control has ended
[2025-11-06 00:23:55] 2025-11-06 07:23:50,488 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 132917517850432)>', '<ExcThread(monitor, started 132917124663040)>']
[2025-11-06 00:23:55] 2025-11-06 07:23:50,502 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-06 00:23:55] 2025-11-06 07:23:50,502 | INFO     | [monitor] control thread has ended
[2025-11-06 00:23:55] 2025-11-06 07:23:55,513 | INFO     | all workflow threads have been joined
[2025-11-06 00:23:55] 2025-11-06 07:23:55,513 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-06 00:23:55] 2025-11-06 07:23:55,514 | INFO     | traces error code: 0
[2025-11-06 00:23:55] 2025-11-06 07:23:55,514 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-06 00:23:55] 2025-11-06 07:23:55,548 [wrapper] ==== pilot stdout END ====
[2025-11-06 00:23:55] 2025-11-06 07:23:55,549 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-06 00:23:55] 2025-11-06 07:23:55,550 [wrapper] pilotpid: 535639
[2025-11-06 00:23:55] 2025-11-06 07:23:55,551 [wrapper] Pilot exit status: 0
[2025-11-06 00:23:55] 2025-11-06 07:23:55,555 [wrapper] pandaids: 6864335320
[2025-11-06 00:23:55] 2025-11-06 07:23:55,569 [wrapper] cleanup supervisor_pilot  553962 535640
[2025-11-06 00:23:55] 2025-11-06 07:23:55,570 [wrapper] Test setup, not cleaning
[2025-11-06 00:23:55] 2025-11-06 07:23:55,571 [wrapper] apfmon messages muted
[2025-11-06 00:23:55] 2025-11-06 07:23:55,572 [wrapper] ==== wrapper stdout END ====
[2025-11-06 00:23:55] 2025-11-06 07:23:55,573 [wrapper] ==== wrapper stderr END ====
[2025-11-06 00:23:55]  *** Error codes and diagnostics ***
[2025-11-06 00:23:55]     "exeErrorCode": 0,
[2025-11-06 00:23:55]     "exeErrorDiag": "",
[2025-11-06 00:23:55]     "pilotErrorCode": 0,
[2025-11-06 00:23:55]     "pilotErrorDiag": "",
[2025-11-06 00:23:55]  *** Listing of results directory ***
[2025-11-06 00:23:55] total 393812
[2025-11-06 00:23:55] -rw-r--r-- 1 boinc boinc    557409 Oct 28 23:31 pilot3.tar.gz
[2025-11-06 00:23:55] -rw-r--r-- 1 boinc boinc      5112 Oct 29 00:11 queuedata.json
[2025-11-06 00:23:55] -rwx------ 1 boinc boinc     36292 Oct 29 00:11 runpilot2-wrapper.sh
[2025-11-06 00:23:55] -rw-r--r-- 1 boinc boinc       100 Nov  5 23:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-06 00:23:55] -rwxr-xr-x 1 boinc boinc      7986 Nov  5 23:48 run_atlas
[2025-11-06 00:23:55] -rw-r--r-- 1 boinc boinc       105 Nov  5 23:48 job.xml
[2025-11-06 00:23:55] -rw-r--r-- 2 boinc boinc     15120 Nov  5 23:48 start_atlas.sh
[2025-11-06 00:23:55] drwxrwx--x 2 boinc boinc      4096 Nov  5 23:48 shared
[2025-11-06 00:23:55] -rw-r--r-- 2 boinc boinc    569676 Nov  5 23:48 input.tar.gz
[2025-11-06 00:23:55] -rw-r--r-- 1 boinc boinc      9912 Nov  5 23:48 init_data.xml
[2025-11-06 00:23:55] -rw-r--r-- 2 boinc boinc 216483501 Nov  5 23:48 EVNT.47081487._000301.pool.root.1
[2025-11-06 00:23:55] -rw-r--r-- 1 boinc boinc         0 Nov  5 23:48 boinc_lockfile
[2025-11-06 00:23:55] -rw-r--r-- 1 boinc boinc      2524 Nov  5 23:48 pandaJob.out
[2025-11-06 00:23:55] -rw------- 1 boinc boinc    985759 Nov  5 23:48 agis_schedconf.cvmfs.json
[2025-11-06 00:23:55] -rw------- 1 boinc boinc   1560632 Nov  5 23:48 agis_ddmendpoints.agis.ALL.json
[2025-11-06 00:23:55] drwx------ 5 boinc boinc      4096 Nov  5 23:48 pilot3
[2025-11-06 00:23:55] -rw------- 1 boinc boinc 181645863 Nov  6 00:22 HITS.47081490._007753.pool.root.1
[2025-11-06 00:23:55] -rw-r--r-- 1 boinc boinc       529 Nov  6 00:22 boinc_task_state.xml
[2025-11-06 00:23:55] -rw------- 1 boinc boinc      1017 Nov  6 00:22 memory_monitor_summary.json
[2025-11-06 00:23:55] -rw------- 1 boinc boinc    273956 Nov  6 00:22 log.47081490._007753.job.log.tgz.1
[2025-11-06 00:23:55] -rw------- 1 boinc boinc      7726 Nov  6 00:22 heartbeat.json
[2025-11-06 00:23:55] -rw------- 1 boinc boinc        95 Nov  6 00:23 pilot_heartbeat.json
[2025-11-06 00:23:55] -rw-r--r-- 1 boinc boinc      8192 Nov  6 00:23 boinc_mmap_file
[2025-11-06 00:23:55] -rw-r--r-- 1 boinc boinc        27 Nov  6 00:23 wrapper_checkpoint.txt
[2025-11-06 00:23:55] -rw------- 1 boinc boinc      4755 Nov  6 00:23 pilotlog.txt
[2025-11-06 00:23:55] -rw------- 1 boinc boinc    335701 Nov  6 00:23 log.47081490._007753.job.log.1
[2025-11-06 00:23:55] -rw------- 1 boinc boinc       357 Nov  6 00:23 output.list
[2025-11-06 00:23:55] -rw-r--r-- 1 boinc boinc       620 Nov  6 00:23 runtime_log
[2025-11-06 00:23:55] -rw------- 1 boinc boinc    624640 Nov  6 00:23 result.tar.gz
[2025-11-06 00:23:55] -rw------- 1 boinc boinc       649 Nov  6 00:23 wihMDm1ZEY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm9lFODmarsRMm.diag
[2025-11-06 00:23:55] -rw-r--r-- 1 boinc boinc      8786 Nov  6 00:23 runtime_log.err
[2025-11-06 00:23:55] -rw-r--r-- 1 boinc boinc     21665 Nov  6 00:23 stderr.txt
[2025-11-06 00:23:55] HITS file was successfully produced:
[2025-11-06 00:23:55] -rw------- 1 boinc boinc 181645863 Nov  6 00:22 shared/HITS.pool.root.1
[2025-11-06 00:23:55]  *** Contents of shared directory: ***
[2025-11-06 00:23:55] total 390000
[2025-11-06 00:23:55] -rw-r--r-- 2 boinc boinc     15120 Nov  5 23:48 start_atlas.sh
[2025-11-06 00:23:55] -rw-r--r-- 2 boinc boinc    569676 Nov  5 23:48 input.tar.gz
[2025-11-06 00:23:55] -rw-r--r-- 2 boinc boinc 216483501 Nov  5 23:48 ATLAS.root_0
[2025-11-06 00:23:55] -rw------- 1 boinc boinc 181645863 Nov  6 00:22 HITS.pool.root.1
[2025-11-06 00:23:55] -rw------- 1 boinc boinc    624640 Nov  6 00:23 result.tar.gz
00:23:56 (531783): run_atlas exited; CPU time 14670.801382
00:23:56 (531783): called boinc_finish(0)

</stderr_txt>
]]>

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