Stderr output

<core_client_version>7.24.5</core_client_version>
<![CDATA[
<stderr_txt>
23:03:07 (487508): wrapper (7.7.26015): starting
23:03:07 (487508): wrapper: running run_atlas (--nthreads 8)
[2025-11-05 23:03:07] Arguments: --nthreads 8
[2025-11-05 23:03:07] Threads: 8
[2025-11-05 23:03:07] Checking for CVMFS
[2025-11-05 23:03:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-05 23:03:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-05 23:03:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-05 23:03:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-05 23:03:08] 2.13.3.0 442731 68 46788 152523 3 188 1630192 4096001 922 130560 0 116455 94.415 647450 805 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-05 23:03:08] CVMFS is ok
[2025-11-05 23:03:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-05 23:03:08] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-05 23:03:08] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-05 23:03:08] Further information can be found at the LHC@home message board.
[2025-11-05 23:03:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-05 23:03:08] Checking for apptainer binary...
[2025-11-05 23:03:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-05 23:03:08] Running /usr/bin/apptainer --version
[2025-11-05 23:03:08] apptainer version 1.4.4
[2025-11-05 23:03:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-05 23:03:08] garage
[2025-11-05 23:03:08] apptainer works
[2025-11-05 23:03:08] Set ATHENA_PROC_NUMBER=8
[2025-11-05 23:03:08] Set ATHENA_CORE_NUMBER=8
[2025-11-05 23:03:08] Starting ATLAS job with PandaID=6864224913
[2025-11-05 23:03:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-05 23:48:29]  *** The last 200 lines of the pilot log: ***
[2025-11-05 23:48:29] 2025-11-06 06:47:30,913 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/1/PanDA_Pilot-6864224913/log.47081490._005170.job.log.tgz.1 /var/lib/boinc-client/slots/1/log.470814
[2025-11-05 23:48:29] 2025-11-06 06:47:30,928 | INFO     | adding to output.list: log.47081490._005170.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/59/f5/log.47081490._005170.job.log.tg
[2025-11-05 23:48:29] 2025-11-06 06:47:30,929 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-11-05 23:48:29] 2025-11-06 06:47:30,929 | INFO     | summary of transferred files:
[2025-11-05 23:48:29] 2025-11-06 06:47:30,929 | INFO     |  -- lfn=log.47081490._005170.job.log.tgz.1, status_code=0, status=transferred
[2025-11-05 23:48:29] 2025-11-06 06:47:30,929 | INFO     | stage-out finished correctly
[2025-11-05 23:48:29] 2025-11-06 06:47:30,945 | INFO     | time since job start (2651s) is within the limit (172800.0s)
[2025-11-05 23:48:29] 2025-11-06 06:47:32,950 | INFO     | time since job start (2653s) is within the limit (172800.0s)
[2025-11-05 23:48:29] 2025-11-06 06:47:33,674 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-11-05 23:48:29] 2025-11-06 06:47:33,725 | INFO     | job 6864224913 has state=finished
[2025-11-05 23:48:29] 2025-11-06 06:47:33,726 | INFO     | preparing for final server update for job 6864224913 in state='finished'
[2025-11-05 23:48:29] 2025-11-06 06:47:33,726 | INFO     | this job has now completed (state=finished)
[2025-11-05 23:48:29] 2025-11-06 06:47:33,726 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-05 23:48:29] 2025-11-06 06:47:33,726 | INFO     | log transfer has been attempted: DONE
[2025-11-05 23:48:29] 2025-11-06 06:47:33,726 | INFO     | job 6864224913 has finished - writing final server update
[2025-11-05 23:48:29] 2025-11-06 06:47:33,726 | INFO     | total number of processed events: 400 (read)
[2025-11-05 23:48:29] 2025-11-06 06:47:33,731 | INFO     | executing command: lscpu
[2025-11-05 23:48:29] 2025-11-06 06:47:33,757 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-05 23:48:29] 2025-11-06 06:47:34,955 | INFO     | time since job start (2655s) is within the limit (172800.0s)
[2025-11-05 23:48:29] 2025-11-06 06:47:35,885 | WARNING  | process 498009 can no longer be monitored (due to stat problems) - aborting
[2025-11-05 23:48:29] 2025-11-06 06:47:35,885 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6864224913/memory_monitor_summary.json (trf name=prmon)
[2025-11-05 23:48:29] 2025-11-06 06:47:35,961 | INFO     | number of running child processes to parent process 498009: 1
[2025-11-05 23:48:29] 2025-11-06 06:47:35,961 | INFO     | maximum number of monitored processes: 6
[2025-11-05 23:48:29] 2025-11-06 06:47:36,961 | INFO     | time since job start (2657s) is within the limit (172800.0s)
[2025-11-05 23:48:29] 2025-11-06 06:47:38,060 | INFO     | PID=491363 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-05 23:48:29] 2025-11-06 06:47:38,061 | INFO     | .. there are 2 such processes running
[2025-11-05 23:48:29] 2025-11-06 06:47:38,464 | INFO     | monitor loop #205: job 0:6864224913 is in state 'finished'
[2025-11-05 23:48:29] 2025-11-06 06:47:38,464 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-05 23:48:29] 2025-11-06 06:47:39,061 | INFO     | time since job start (2660s) is within the limit (172800.0s)
[2025-11-05 23:48:29] 2025-11-06 06:47:39,061 | INFO     | 2664s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-05 23:48:29] 2025-11-06 06:47:40,967 | INFO     | monitor loop #206: job 0:6864224913 is in state 'finished'
[2025-11-05 23:48:29] 2025-11-06 06:47:40,967 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-05 23:48:29] 2025-11-06 06:47:41,066 | INFO     | time since job start (2662s) is within the limit (172800.0s)
[2025-11-05 23:48:29] 2025-11-06 06:47:41,366 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-05 23:48:29] 2025-11-06 06:47:41,369 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4047.6887812500004
[2025-11-05 23:48:29] 2025-11-06 06:47:41,372 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6864224913/memory_monitor_summary.json (trf name=prmon)
[2025-11-05 23:48:29] 2025-11-06 06:47:41,373 | INFO     | extracted standard info from prmon json
[2025-11-05 23:48:29] 2025-11-06 06:47:41,373 | INFO     | extracted standard memory fields from prmon json
[2025-11-05 23:48:29] 2025-11-06 06:47:41,373 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-05 23:48:29] 2025-11-06 06:47:41,373 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-05 23:48:29] 2025-11-06 06:47:41,373 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-05 23:48:29] 2025-11-06 06:47:41,374 | INFO     | fitting pss+swap vs Time
[2025-11-05 23:48:29] 2025-11-06 06:47:41,374 | INFO     | sum of square deviations: 15695178.0
[2025-11-05 23:48:29] 2025-11-06 06:47:41,374 | INFO     | sum of deviations: 214980470.0
[2025-11-05 23:48:29] 2025-11-06 06:47:41,374 | INFO     | mean x: 1762410423.0
[2025-11-05 23:48:29] 2025-11-06 06:47:41,374 | INFO     | mean y: 2715146.2702702703
[2025-11-05 23:48:29] 2025-11-06 06:47:41,374 | INFO     | -- intersect: -24137426562.822723
[2025-11-05 23:48:29] 2025-11-06 06:47:41,374 | INFO     | intersect: -24137426562.822723
[2025-11-05 23:48:29] 2025-11-06 06:47:41,374 | INFO     | chi2: 0.00945571792423629
[2025-11-05 23:48:29] 2025-11-06 06:47:41,374 | INFO     | -- intersect: -24137426562.822723
[2025-11-05 23:48:29] 2025-11-06 06:47:41,374 | INFO     | current memory leak: 13.70 B/s (using 37 data points, chi2=0.01)
[2025-11-05 23:48:29] 2025-11-06 06:47:41,374 | INFO     | could have reported an average CPU frequency of 4257 MHz (5 samples)
[2025-11-05 23:48:29] 2025-11-06 06:47:41,374 | INFO     | ..............................
[2025-11-05 23:48:29] 2025-11-06 06:47:41,374 | INFO     | . Timing measurements:
[2025-11-05 23:48:29] 2025-11-06 06:47:41,375 | INFO     | . get job = 0 s
[2025-11-05 23:48:29] 2025-11-06 06:47:41,375 | INFO     | . initial setup = 4 s
[2025-11-05 23:48:29] 2025-11-06 06:47:41,375 | INFO     | . payload setup = 4 s
[2025-11-05 23:48:29] 2025-11-06 06:47:41,375 | INFO     | . stage-in = 0 s
[2025-11-05 23:48:29] 2025-11-06 06:47:41,375 | INFO     | . payload execution = 2628 s
[2025-11-05 23:48:29] 2025-11-06 06:47:41,375 | INFO     | . stage-out = 0 s
[2025-11-05 23:48:29] 2025-11-06 06:47:41,375 | INFO     | . log creation = 0 s
[2025-11-05 23:48:29] 2025-11-06 06:47:41,375 | INFO     | ..............................
[2025-11-05 23:48:29] 2025-11-06 06:47:41,737 | INFO     | 
[2025-11-05 23:48:29] 2025-11-06 06:47:41,737 | INFO     | job summary report
[2025-11-05 23:48:29] 2025-11-06 06:47:41,737 | INFO     | --------------------------------------------------
[2025-11-05 23:48:29] 2025-11-06 06:47:41,737 | INFO     | PanDA job id: 6864224913
[2025-11-05 23:48:29] 2025-11-06 06:47:41,737 | INFO     | task id: 47081490
[2025-11-05 23:48:29] 2025-11-06 06:47:41,737 | INFO     | errors: (none)
[2025-11-05 23:48:29] 2025-11-06 06:47:41,737 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-05 23:48:29] 2025-11-06 06:47:41,738 | INFO     | pilot state: finished 
[2025-11-05 23:48:29] 2025-11-06 06:47:41,738 | INFO     | transexitcode: 0
[2025-11-05 23:48:29] 2025-11-06 06:47:41,738 | INFO     | exeerrorcode: 0
[2025-11-05 23:48:29] 2025-11-06 06:47:41,738 | INFO     | exeerrordiag: 
[2025-11-05 23:48:29] 2025-11-06 06:47:41,738 | INFO     | exitcode: 0
[2025-11-05 23:48:29] 2025-11-06 06:47:41,738 | INFO     | exitmsg: OK
[2025-11-05 23:48:29] 2025-11-06 06:47:41,738 | INFO     | cpuconsumptiontime: 19144 s
[2025-11-05 23:48:29] 2025-11-06 06:47:41,738 | INFO     | nevents: 400
[2025-11-05 23:48:29] 2025-11-06 06:47:41,738 | INFO     | neventsw: 0
[2025-11-05 23:48:29] 2025-11-06 06:47:41,738 | INFO     | pid: 498009
[2025-11-05 23:48:29] 2025-11-06 06:47:41,738 | INFO     | pgrp: 498009
[2025-11-05 23:48:29] 2025-11-06 06:47:41,738 | INFO     | corecount: 8
[2025-11-05 23:48:29] 2025-11-06 06:47:41,738 | INFO     | event service: False
[2025-11-05 23:48:29] 2025-11-06 06:47:41,738 | INFO     | sizes: {0: 2348890, 3: 2349152, 11: 2349180, 2636: 2374537, 2637: 2383549, 2640: 2383605, 2648: 2383959}
[2025-11-05 23:48:29] 2025-11-06 06:47:41,738 | INFO     | --------------------------------------------------
[2025-11-05 23:48:29] 2025-11-06 06:47:41,738 | INFO     | 
[2025-11-05 23:48:29] 2025-11-06 06:47:41,738 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2025-11-05 23:48:29] 2025-11-06 06:47:41,760 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-05 23:48:29] 2025-11-06 06:47:41,760 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-05 23:48:29] 2025-11-06 06:47:41,760 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-05 23:48:29] 2025-11-06 06:47:41,760 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-05 23:48:29] 2025-11-06 06:47:41,760 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-05 23:48:29] 2025-11-06 06:47:41,760 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-05 23:48:29] 2025-11-06 06:47:41,760 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-05 23:48:29] 2025-11-06 06:47:41,760 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-05 23:48:29] 2025-11-06 06:47:41,760 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-05 23:48:29] 2025-11-06 06:47:41,760 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-05 23:48:29] 2025-11-06 06:47:41,760 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-05 23:48:29] 2025-11-06 06:47:41,760 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-05 23:48:29] 2025-11-06 06:47:41,760 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-05 23:48:29] 2025-11-06 06:47:41,760 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-05 23:48:29] 2025-11-06 06:47:41,760 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-05 23:48:29] 2025-11-06 06:47:41,760 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-05 23:48:29] 2025-11-06 06:47:41,761 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-05 23:48:29] 2025-11-06 06:47:41,761 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-05 23:48:29] 2025-11-06 06:47:41,761 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-05 23:48:29] 2025-11-06 06:47:41,761 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-05 23:48:29] 2025-11-06 06:47:41,761 | INFO     | job 6864224913 has completed (purged errors)
[2025-11-05 23:48:29] 2025-11-06 06:47:41,761 | INFO     | overall cleanup function is called
[2025-11-05 23:48:29] 2025-11-06 06:47:42,768 | INFO     | --- collectZombieJob: --- 10, [498009]
[2025-11-05 23:48:29] 2025-11-06 06:47:42,768 | INFO     | zombie collector waiting for pid 498009
[2025-11-05 23:48:29] 2025-11-06 06:47:42,768 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-05 23:48:29] 2025-11-06 06:47:42,768 | INFO     | collected zombie processes
[2025-11-05 23:48:29] 2025-11-06 06:47:42,768 | INFO     | will attempt to kill all subprocesses of pid=498009
[2025-11-05 23:48:29] 2025-11-06 06:47:42,846 | INFO     | process IDs to be killed: [498009] (in reverse order)
[2025-11-05 23:48:29] 2025-11-06 06:47:42,887 | WARNING  | found no corresponding commands to process id(s)
[2025-11-05 23:48:29] 2025-11-06 06:47:42,888 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-05 23:48:29] 2025-11-06 06:47:42,891 | INFO     | did not find any defunct processes belonging to 498009
[2025-11-05 23:48:29] 2025-11-06 06:47:42,893 | INFO     | did not find any defunct processes belonging to 498009
[2025-11-05 23:48:29] 2025-11-06 06:47:42,893 | INFO     | ready for new job
[2025-11-05 23:48:29] 2025-11-06 06:47:42,893 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-05 23:48:29] 2025-11-06 06:47:42,894 | INFO     | ***************************************
[2025-11-05 23:48:29] 2025-11-06 06:47:42,894 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-11-05 23:48:29] 2025-11-06 06:47:42,894 | INFO     | ***************************************
[2025-11-05 23:48:29] 2025-11-06 06:47:42,894 | INFO     | 
[2025-11-05 23:48:29] 2025-11-06 06:47:42,896 | INFO     | architecture information:
[2025-11-05 23:48:29] 2025-11-06 06:47:42,898 | INFO     | executing command: cat /etc/os-release
[2025-11-05 23:48:29] 2025-11-06 06:47:42,922 | INFO     | cat /etc/os-release:
[2025-11-05 23:48:29] NAME="CentOS Linux"
[2025-11-05 23:48:29] VERSION="7 (Core)"
[2025-11-05 23:48:29] ID="centos"
[2025-11-05 23:48:29] ID_LIKE="rhel fedora"
[2025-11-05 23:48:29] VERSION_ID="7"
[2025-11-05 23:48:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-05 23:48:29] ANSI_COLOR="0;31"
[2025-11-05 23:48:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-05 23:48:29] HOME_URL="https://www.centos.org/"
[2025-11-05 23:48:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-05 23:48:29] 
[2025-11-05 23:48:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-05 23:48:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-05 23:48:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-05 23:48:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-05 23:48:29] 
[2025-11-05 23:48:29] 2025-11-06 06:47:42,922 | INFO     | ***************************************
[2025-11-05 23:48:29] 2025-11-06 06:47:43,425 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2025-11-05 23:48:29] 2025-11-06 06:47:43,441 | INFO     | sufficient remaining disk space (678933037056 B)
[2025-11-05 23:48:29] 2025-11-06 06:47:43,441 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-05 23:48:29] 2025-11-06 06:47:43,441 | INFO     | current server update state: UPDATING_FINAL
[2025-11-05 23:48:29] 2025-11-06 06:47:43,441 | INFO     | update_server=False
[2025-11-05 23:48:29] 2025-11-06 06:47:43,441 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-05 23:48:29] 2025-11-06 06:47:43,470 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-05 23:48:29] 2025-11-06 06:47:43,470 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-05 23:48:29] 2025-11-06 06:47:43,471 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-05 23:48:29] 2025-11-06 06:47:43,471 | INFO     | will abort loop
[2025-11-05 23:48:29] 2025-11-06 06:47:43,664 | INFO     | all job control threads have been joined
[2025-11-05 23:48:29] 2025-11-06 06:47:43,993 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-05 23:48:29] 2025-11-06 06:47:44,234 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-05 23:48:29] 2025-11-06 06:47:44,374 | INFO     | all data control threads have been joined
[2025-11-05 23:48:29] 2025-11-06 06:47:44,446 | INFO     | [job] retrieve thread has finished
[2025-11-05 23:48:29] 2025-11-06 06:47:44,476 | INFO     | [job] job monitor thread has finished
[2025-11-05 23:48:29] 2025-11-06 06:47:44,486 | INFO     | [job] create_data_payload thread has finished
[2025-11-05 23:48:29] 2025-11-06 06:47:44,514 | INFO     | all payload control threads have been joined
[2025-11-05 23:48:29] 2025-11-06 06:47:44,609 | INFO     | [payload] failed_post thread has finished
[2025-11-05 23:48:29] 2025-11-06 06:47:44,657 | INFO     | [data] copytool_in thread has finished
[2025-11-05 23:48:29] 2025-11-06 06:47:44,669 | INFO     | [job] control thread has finished
[2025-11-05 23:48:29] 2025-11-06 06:47:44,705 | INFO     | [payload] validate_pre thread has finished
[2025-11-05 23:48:29] 2025-11-06 06:47:45,163 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-05 23:48:29] 2025-11-06 06:47:45,244 | INFO     | [payload] validate_post thread has finished
[2025-11-05 23:48:29] 2025-11-06 06:47:45,379 | INFO     | [data] control thread has finished
[2025-11-05 23:48:29] 2025-11-06 06:47:45,519 | INFO     | [payload] control thread has finished
[2025-11-05 23:48:29] 2025-11-06 06:47:45,796 | INFO     | [job] validate thread has finished
[2025-11-05 23:48:29] 2025-11-06 06:47:45,804 | INFO     | [payload] execute_payloads thread has finished
[2025-11-05 23:48:29] 2025-11-06 06:47:45,998 | INFO     | [data] copytool_out thread has finished
[2025-11-05 23:48:29] 2025-11-06 06:47:46,440 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-05 23:48:29] 2025-11-06 06:47:47,445 | INFO     | [job] queue monitor thread has finished
[2025-11-05 23:48:29] 2025-11-06 06:47:48,240 | INFO     | [data] queue_monitor thread has finished
[2025-11-05 23:48:29] 2025-11-06 06:48:14,159 [wrapper] supervise_pilot (15 min periods counter: 4)
[2025-11-05 23:48:29] 2025-11-06 06:48:14,232 | INFO     | PID=491363 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-05 23:48:29] 2025-11-06 06:48:14,232 | INFO     | .. there are 2 such processes running
[2025-11-05 23:48:29] 2025-11-06 06:48:14,232 | INFO     | found 0 job(s) in 20 queues
[2025-11-05 23:48:29] 2025-11-06 06:48:14,232 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-05 23:48:29] 2025-11-06 06:48:14,232 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-05 23:48:29] 2025-11-06 06:48:23,265 | INFO     | [monitor] cgroup control has ended
[2025-11-05 23:48:29] 2025-11-06 06:48:24,270 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 129684065916736)>', '<ExcThread(monitor, started 129683695863552)>']
[2025-11-05 23:48:29] 2025-11-06 06:48:24,281 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-05 23:48:29] 2025-11-06 06:48:24,281 | INFO     | [monitor] control thread has ended
[2025-11-05 23:48:29] 2025-11-06 06:48:29,295 | INFO     | all workflow threads have been joined
[2025-11-05 23:48:29] 2025-11-06 06:48:29,295 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-05 23:48:29] 2025-11-06 06:48:29,295 | INFO     | traces error code: 0
[2025-11-05 23:48:29] 2025-11-06 06:48:29,295 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-05 23:48:29] 2025-11-06 06:48:29,351 [wrapper] ==== pilot stdout END ====
[2025-11-05 23:48:29] 2025-11-06 06:48:29,353 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-05 23:48:29] 2025-11-06 06:48:29,357 [wrapper] pilotpid: 491363
[2025-11-05 23:48:29] 2025-11-06 06:48:29,361 [wrapper] Pilot exit status: 0
[2025-11-05 23:48:29] 2025-11-06 06:48:29,369 [wrapper] pandaids: 6864224913
[2025-11-05 23:48:29] 2025-11-06 06:48:29,404 [wrapper] cleanup supervisor_pilot  531725 491364
[2025-11-05 23:48:29] 2025-11-06 06:48:29,411 [wrapper] Test setup, not cleaning
[2025-11-05 23:48:29] 2025-11-06 06:48:29,413 [wrapper] apfmon messages muted
[2025-11-05 23:48:29] 2025-11-06 06:48:29,414 [wrapper] ==== wrapper stdout END ====
[2025-11-05 23:48:29] 2025-11-06 06:48:29,416 [wrapper] ==== wrapper stderr END ====
[2025-11-05 23:48:29]  *** Error codes and diagnostics ***
[2025-11-05 23:48:29]     "exeErrorCode": 0,
[2025-11-05 23:48:29]     "exeErrorDiag": "",
[2025-11-05 23:48:29]     "pilotErrorCode": 0,
[2025-11-05 23:48:29]     "pilotErrorDiag": "",
[2025-11-05 23:48:29]  *** Listing of results directory ***
[2025-11-05 23:48:29] total 389444
[2025-11-05 23:48:29] -rwx------ 1 boinc boinc     36292 Oct 28 23:13 runpilot2-wrapper.sh
[2025-11-05 23:48:29] -rw-r--r-- 1 boinc boinc      5112 Oct 28 23:14 queuedata.json
[2025-11-05 23:48:29] -rw-r--r-- 1 boinc boinc    557409 Oct 28 23:14 pilot3.tar.gz
[2025-11-05 23:48:29] -rw-r--r-- 1 boinc boinc       100 Nov  5 23:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-05 23:48:29] -rwxr-xr-x 1 boinc boinc      7986 Nov  5 23:03 run_atlas
[2025-11-05 23:48:29] -rw-r--r-- 1 boinc boinc       105 Nov  5 23:03 job.xml
[2025-11-05 23:48:29] -rw-r--r-- 2 boinc boinc     15120 Nov  5 23:03 start_atlas.sh
[2025-11-05 23:48:29] drwxrwx--x 2 boinc boinc      4096 Nov  5 23:03 shared
[2025-11-05 23:48:29] -rw-r--r-- 2 boinc boinc    569671 Nov  5 23:03 input.tar.gz
[2025-11-05 23:48:29] -rw-r--r-- 1 boinc boinc      9911 Nov  5 23:03 init_data.xml
[2025-11-05 23:48:29] -rw-r--r-- 2 boinc boinc 214268486 Nov  5 23:03 EVNT.47081487._000197.pool.root.1
[2025-11-05 23:48:29] -rw-r--r-- 1 boinc boinc         0 Nov  5 23:03 boinc_lockfile
[2025-11-05 23:48:29] -rw-r--r-- 1 boinc boinc      2525 Nov  5 23:03 pandaJob.out
[2025-11-05 23:48:29] -rw------- 1 boinc boinc    985759 Nov  5 23:03 agis_schedconf.cvmfs.json
[2025-11-05 23:48:29] -rw------- 1 boinc boinc   1560632 Nov  5 23:03 agis_ddmendpoints.agis.ALL.json
[2025-11-05 23:48:29] drwx------ 5 boinc boinc      4096 Nov  5 23:03 pilot3
[2025-11-05 23:48:29] -rw------- 1 boinc boinc 179168888 Nov  5 23:47 HITS.47081490._005170.pool.root.1
[2025-11-05 23:48:29] -rw-r--r-- 1 boinc boinc       530 Nov  5 23:47 boinc_task_state.xml
[2025-11-05 23:48:29] -rw------- 1 boinc boinc      1019 Nov  5 23:47 memory_monitor_summary.json
[2025-11-05 23:48:29] -rw------- 1 boinc boinc    295522 Nov  5 23:47 log.47081490._005170.job.log.tgz.1
[2025-11-05 23:48:29] -rw------- 1 boinc boinc        95 Nov  5 23:47 pilot_heartbeat.json
[2025-11-05 23:48:29] -rw------- 1 boinc boinc      7731 Nov  5 23:47 heartbeat.json
[2025-11-05 23:48:29] -rw-r--r-- 1 boinc boinc        27 Nov  5 23:48 wrapper_checkpoint.txt
[2025-11-05 23:48:29] -rw-r--r-- 1 boinc boinc      8192 Nov  5 23:48 boinc_mmap_file
[2025-11-05 23:48:29] -rw------- 1 boinc boinc      5016 Nov  5 23:48 pilotlog.txt
[2025-11-05 23:48:29] -rw------- 1 boinc boinc    425419 Nov  5 23:48 log.47081490._005170.job.log.1
[2025-11-05 23:48:29] -rw------- 1 boinc boinc       357 Nov  5 23:48 output.list
[2025-11-05 23:48:29] -rw-r--r-- 1 boinc boinc       620 Nov  5 23:48 runtime_log
[2025-11-05 23:48:29] -rw------- 1 boinc boinc    737280 Nov  5 23:48 result.tar.gz
[2025-11-05 23:48:29] -rw-r--r-- 1 boinc boinc      8786 Nov  5 23:48 runtime_log.err
[2025-11-05 23:48:29] -rw------- 1 boinc boinc       650 Nov  5 23:48 iYcLDmDgDY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYWFODmMmDBLm.diag
[2025-11-05 23:48:29] -rw-r--r-- 1 boinc boinc     22484 Nov  5 23:48 stderr.txt
[2025-11-05 23:48:29] HITS file was successfully produced:
[2025-11-05 23:48:29] -rw------- 1 boinc boinc 179168888 Nov  5 23:47 shared/HITS.pool.root.1
[2025-11-05 23:48:29]  *** Contents of shared directory: ***
[2025-11-05 23:48:29] total 385520
[2025-11-05 23:48:29] -rw-r--r-- 2 boinc boinc     15120 Nov  5 23:03 start_atlas.sh
[2025-11-05 23:48:29] -rw-r--r-- 2 boinc boinc    569671 Nov  5 23:03 input.tar.gz
[2025-11-05 23:48:29] -rw-r--r-- 2 boinc boinc 214268486 Nov  5 23:03 ATLAS.root_0
[2025-11-05 23:48:29] -rw------- 1 boinc boinc 179168888 Nov  5 23:47 HITS.pool.root.1
[2025-11-05 23:48:29] -rw------- 1 boinc boinc    737280 Nov  5 23:48 result.tar.gz
23:48:30 (487508): run_atlas exited; CPU time 19151.127499
23:48:30 (487508): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN