Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:45:06 (2529201): wrapper (7.7.26015): starting
06:45:06 (2529201): wrapper: running run_atlas (--nthreads 3)
[2025-10-30 06:45:06] Arguments: --nthreads 3
[2025-10-30 06:45:06] Threads: 3
[2025-10-30 06:45:06] Checking for CVMFS
[2025-10-30 06:45:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-30 06:45:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-30 06:45:06] Running cvmfs_config stat atlas.cern.ch
[2025-10-30 06:45:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-30 06:45:06] 2.9.2.0 2087405 1323 76352 152291 3 57 33425086 36864000 0 130560 0 1179087 99.988 52599 1501 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-30 06:45:06] CVMFS is ok
[2025-10-30 06:45:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-30 06:45:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-30 06:45:06] Further information can be found at the LHC@home message board.
[2025-10-30 06:45:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-30 06:45:06] Checking for apptainer binary...
[2025-10-30 06:45:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-30 06:45:06] Running /usr/bin/apptainer --version
[2025-10-30 06:45:06] apptainer version 1.4.1-1.1
[2025-10-30 06:45:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-30 06:45:06] magicA161a
[2025-10-30 06:45:06] apptainer works
[2025-10-30 06:45:06] Set ATHENA_PROC_NUMBER=3
[2025-10-30 06:45:06] Set ATHENA_CORE_NUMBER=3
[2025-10-30 06:45:06] Starting ATLAS job with PandaID=6864846441
[2025-10-30 06:45:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-30 07:55:21]  *** The last 200 lines of the pilot log: ***
[2025-10-30 07:55:21] 2025-10-30 06:54:46,419 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-30 07:55:21] 2025-10-30 06:54:46,419 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-30 07:55:21] 2025-10-30 06:54:46,419 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-30 07:55:21] 2025-10-30 06:54:46,419 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-30 07:55:21] 2025-10-30 06:54:46,419 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-30 07:55:21] 2025-10-30 06:54:46,419 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-30 07:55:21] 2025-10-30 06:54:46,419 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-30 07:55:21] 2025-10-30 06:54:46,419 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-30 07:55:21] 2025-10-30 06:54:46,420 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-30 07:55:21] 2025-10-30 06:54:46,420 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-30 07:55:21] 2025-10-30 06:54:46,420 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-30 07:55:21] 2025-10-30 06:54:46,420 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-30 07:55:21] 2025-10-30 06:54:46,420 | INFO     | job 6864846441 has completed (purged errors)
[2025-10-30 07:55:21] 2025-10-30 06:54:46,420 | INFO     | overall cleanup function is called
[2025-10-30 07:55:21] 2025-10-30 06:54:47,426 | INFO     | --- collectZombieJob: --- 10, [2539356]
[2025-10-30 07:55:21] 2025-10-30 06:54:47,427 | INFO     | zombie collector waiting for pid 2539356
[2025-10-30 07:55:21] 2025-10-30 06:54:47,427 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-30 07:55:21] 2025-10-30 06:54:47,427 | INFO     | collected zombie processes
[2025-10-30 07:55:21] 2025-10-30 06:54:47,427 | INFO     | will attempt to kill all subprocesses of pid=2539356
[2025-10-30 07:55:21] 2025-10-30 06:54:47,469 | INFO     | process IDs to be killed: [2539356] (in reverse order)
[2025-10-30 07:55:21] 2025-10-30 06:54:47,492 | WARNING  | found no corresponding commands to process id(s)
[2025-10-30 07:55:21] 2025-10-30 06:54:47,492 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-30 07:55:21] 2025-10-30 06:54:47,493 | INFO     | did not find any defunct processes belonging to 2539356
[2025-10-30 07:55:21] 2025-10-30 06:54:47,494 | INFO     | did not find any defunct processes belonging to 2539356
[2025-10-30 07:55:21] 2025-10-30 06:54:47,494 | INFO     | ready for new job
[2025-10-30 07:55:21] 2025-10-30 06:54:47,494 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-30 07:55:21] 2025-10-30 06:54:47,495 | INFO     | ***************************************
[2025-10-30 07:55:21] 2025-10-30 06:54:47,495 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-30 07:55:21] 2025-10-30 06:54:47,495 | INFO     | ***************************************
[2025-10-30 07:55:21] 2025-10-30 06:54:47,495 | INFO     | 
[2025-10-30 07:55:21] 2025-10-30 06:54:47,495 | INFO     | architecture information:
[2025-10-30 07:55:21] 2025-10-30 06:54:47,495 | INFO     | executing command: cat /etc/os-release
[2025-10-30 07:55:21] 2025-10-30 06:54:47,503 | INFO     | cat /etc/os-release:
[2025-10-30 07:55:21] NAME="CentOS Linux"
[2025-10-30 07:55:21] VERSION="7 (Core)"
[2025-10-30 07:55:21] ID="centos"
[2025-10-30 07:55:21] ID_LIKE="rhel fedora"
[2025-10-30 07:55:21] VERSION_ID="7"
[2025-10-30 07:55:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-30 07:55:21] ANSI_COLOR="0;31"
[2025-10-30 07:55:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-30 07:55:21] HOME_URL="https://www.centos.org/"
[2025-10-30 07:55:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-30 07:55:21] 
[2025-10-30 07:55:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-30 07:55:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-30 07:55:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-30 07:55:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-30 07:55:21] 
[2025-10-30 07:55:21] 2025-10-30 06:54:47,504 | INFO     | ***************************************
[2025-10-30 07:55:21] 2025-10-30 06:54:48,007 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-30 07:55:21] 2025-10-30 06:54:48,019 | INFO     | sufficient remaining disk space (372961705984 B)
[2025-10-30 07:55:21] 2025-10-30 06:54:48,020 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-30 07:55:21] 2025-10-30 06:54:48,020 | INFO     | current server update state: UPDATING_FINAL
[2025-10-30 07:55:21] 2025-10-30 06:54:48,020 | INFO     | update_server=False
[2025-10-30 07:55:21] 2025-10-30 06:54:48,020 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-30 07:55:21] 2025-10-30 06:54:48,020 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-30 07:55:21] 2025-10-30 06:54:48,020 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-30 07:55:21] 2025-10-30 06:54:48,020 | INFO     | aborting loop
[2025-10-30 07:55:21] 2025-10-30 06:54:48,063 | INFO     | all job control threads have been joined
[2025-10-30 07:55:21] 2025-10-30 06:54:48,311 | INFO     | all payload control threads have been joined
[2025-10-30 07:55:21] 2025-10-30 06:54:48,341 | INFO     | all data control threads have been joined
[2025-10-30 07:55:21] 2025-10-30 06:54:49,026 | INFO     | [job] queue monitor thread has finished
[2025-10-30 07:55:21] 2025-10-30 06:54:49,026 | INFO     | [job] retrieve thread has finished
[2025-10-30 07:55:21] 2025-10-30 06:54:49,026 | INFO     | [job] job monitor thread has finished
[2025-10-30 07:55:21] 2025-10-30 06:54:49,068 | INFO     | [payload] validate_pre thread has finished
[2025-10-30 07:55:21] 2025-10-30 06:54:49,069 | INFO     | [job] control thread has finished
[2025-10-30 07:55:21] 2025-10-30 06:54:49,214 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-30 07:55:21] 2025-10-30 06:54:49,232 | INFO     | [payload] validate_post thread has finished
[2025-10-30 07:55:21] 2025-10-30 06:54:49,316 | INFO     | [payload] control thread has finished
[2025-10-30 07:55:21] 2025-10-30 06:54:49,347 | INFO     | [data] control thread has finished
[2025-10-30 07:55:21] 2025-10-30 06:54:49,898 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-30 07:55:21] 2025-10-30 06:54:49,908 | INFO     | [data] copytool_in thread has finished
[2025-10-30 07:55:21] 2025-10-30 06:54:50,147 | INFO     | [payload] execute_payloads thread has finished
[2025-10-30 07:55:21] 2025-10-30 06:54:50,301 | INFO     | [payload] failed_post thread has finished
[2025-10-30 07:55:21] 2025-10-30 06:54:50,433 | INFO     | [job] validate thread has finished
[2025-10-30 07:55:21] 2025-10-30 06:54:50,515 | INFO     | [job] create_data_payload thread has finished
[2025-10-30 07:55:21] 2025-10-30 06:54:51,220 | INFO     | [data] copytool_out thread has finished
[2025-10-30 07:55:21] 2025-10-30 06:54:53,905 | INFO     | [data] queue_monitor thread has finished
[2025-10-30 07:55:21] 2025-10-30 06:54:58,946 | INFO     | job.realtimelogging is not enabled
[2025-10-30 07:55:21] 2025-10-30 06:54:59,952 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-30 07:55:21] 2025-10-30 06:55:16,740 | INFO     | [monitor] cgroup control has ended
[2025-10-30 07:55:21] 2025-10-30 06:55:16,756 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140341056563008)>', '<ExcThread(monitor, started 140340572960512)>']
[2025-10-30 07:55:21] 2025-10-30 06:55:17,863 | INFO     | PID=2532920 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-30 07:55:21] 2025-10-30 06:55:17,863 | INFO     | found 0 job(s) in 20 queues
[2025-10-30 07:55:21] 2025-10-30 06:55:17,863 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-30 07:55:21] 2025-10-30 06:55:17,863 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-30 07:55:21] 2025-10-30 06:55:17,863 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-30 07:55:21] 2025-10-30 06:55:17,863 | INFO     | [monitor] control thread has ended
[2025-10-30 07:55:21] 2025-10-30 06:55:21,782 | INFO     | all workflow threads have been joined
[2025-10-30 07:55:21] 2025-10-30 06:55:21,782 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-30 07:55:21] 2025-10-30 06:55:21,782 | INFO     | traces error code: 0
[2025-10-30 07:55:21] 2025-10-30 06:55:21,782 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-30 07:55:21] 2025-10-30 06:55:21,832 [wrapper] ==== pilot stdout END ====
[2025-10-30 07:55:21] 2025-10-30 06:55:21,835 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-30 07:55:21] 2025-10-30 06:55:21,837 [wrapper] pilotpid: 2532920
[2025-10-30 07:55:21] 2025-10-30 06:55:21,839 [wrapper] Pilot exit status: 0
[2025-10-30 07:55:21] 2025-10-30 06:55:21,846 [wrapper] pandaids: 6864846441
[2025-10-30 07:55:21] 2025-10-30 06:55:21,862 [wrapper] cleanup supervisor_pilot 2548989 2532921
[2025-10-30 07:55:21] 2025-10-30 06:55:21,865 [wrapper] Test setup, not cleaning
[2025-10-30 07:55:21] 2025-10-30 06:55:21,867 [wrapper] apfmon messages muted
[2025-10-30 07:55:21] 2025-10-30 06:55:21,869 [wrapper] ==== wrapper stdout END ====
[2025-10-30 07:55:21] 2025-10-30 06:55:21,872 [wrapper] ==== wrapper stderr END ====
[2025-10-30 07:55:21]  *** Error codes and diagnostics ***
[2025-10-30 07:55:21]     "exeErrorCode": 0,
[2025-10-30 07:55:21]     "exeErrorDiag": "",
[2025-10-30 07:55:21]     "pilotErrorCode": 0,
[2025-10-30 07:55:21]     "pilotErrorDiag": "",
[2025-10-30 07:55:21]  *** Listing of results directory ***
[2025-10-30 07:55:21] total 386784
[2025-10-30 07:55:21] -rw-r--r-- 1 boinc boinc    557409 Oct 29 18:58 pilot3.tar.gz
[2025-10-30 07:55:21] -rw-r--r-- 1 boinc boinc      5112 Oct 29 19:03 queuedata.json
[2025-10-30 07:55:21] -rwx------ 1 boinc boinc     36292 Oct 29 19:04 runpilot2-wrapper.sh
[2025-10-30 07:55:21] -rw-r--r-- 1 boinc boinc       100 Oct 30 06:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-30 07:55:21] -rwxr-xr-x 1 boinc boinc      7986 Oct 30 06:45 run_atlas
[2025-10-30 07:55:21] -rw-r--r-- 1 boinc boinc       105 Oct 30 06:45 job.xml
[2025-10-30 07:55:21] -rw-r--r-- 2 boinc boinc 215968351 Oct 30 06:45 EVNT.47081487._001060.pool.root.1
[2025-10-30 07:55:21] -rw-r--r-- 2 boinc boinc    569681 Oct 30 06:45 input.tar.gz
[2025-10-30 07:55:21] -rw-r--r-- 2 boinc boinc     15120 Oct 30 06:45 start_atlas.sh
[2025-10-30 07:55:21] drwxrwx--x 2 boinc boinc      4096 Oct 30 06:45 shared
[2025-10-30 07:55:21] -rw-r--r-- 1 boinc boinc         0 Oct 30 06:45 boinc_setup_complete
[2025-10-30 07:55:21] -rw-r--r-- 1 boinc boinc      6448 Oct 30 06:45 init_data.xml
[2025-10-30 07:55:21] -rw-r--r-- 1 boinc boinc         0 Oct 30 06:45 boinc_lockfile
[2025-10-30 07:55:21] -rw-r--r-- 1 boinc boinc      2526 Oct 30 06:45 pandaJob.out
[2025-10-30 07:55:21] -rw------- 1 boinc boinc    987256 Oct 30 06:45 agis_schedconf.cvmfs.json
[2025-10-30 07:55:21] -rw------- 1 boinc boinc   1560632 Oct 30 06:45 agis_ddmendpoints.agis.ALL.json
[2025-10-30 07:55:21] drwx------ 5 boinc boinc      4096 Oct 30 06:45 pilot3
[2025-10-30 07:55:21] -rw------- 1 boinc boinc 174444708 Oct 30 07:54 HITS.47081490._026439.pool.root.1
[2025-10-30 07:55:21] -rw------- 1 boinc boinc        95 Oct 30 07:54 pilot_heartbeat.json
[2025-10-30 07:55:21] -rw-r--r-- 1 boinc boinc       529 Oct 30 07:54 boinc_task_state.xml
[2025-10-30 07:55:21] -rw------- 1 boinc boinc      1011 Oct 30 07:54 memory_monitor_summary.json
[2025-10-30 07:55:21] -rw------- 1 boinc boinc    252708 Oct 30 07:54 log.47081490._026439.job.log.tgz.1
[2025-10-30 07:55:21] -rw------- 1 boinc boinc      7756 Oct 30 07:54 heartbeat.json
[2025-10-30 07:55:21] -rw-r--r-- 1 boinc boinc      8192 Oct 30 07:54 boinc_mmap_file
[2025-10-30 07:55:21] -rw-r--r-- 1 boinc boinc        27 Oct 30 07:54 wrapper_checkpoint.txt
[2025-10-30 07:55:21] -rw------- 1 boinc boinc      4824 Oct 30 07:55 pilotlog.txt
[2025-10-30 07:55:21] -rw------- 1 boinc boinc    621425 Oct 30 07:55 log.47081490._026439.job.log.1
[2025-10-30 07:55:21] -rw------- 1 boinc boinc       357 Oct 30 07:55 output.list
[2025-10-30 07:55:21] -rw-r--r-- 1 boinc boinc       620 Oct 30 07:55 runtime_log
[2025-10-30 07:55:21] -rw------- 1 boinc boinc    890880 Oct 30 07:55 result.tar.gz
[2025-10-30 07:55:21] -rw-r--r-- 1 boinc boinc      8797 Oct 30 07:55 runtime_log.err
[2025-10-30 07:55:21] -rw------- 1 boinc boinc       662 Oct 30 07:55 HXMKDm3hPY8n9Rq4apOajLDm4fhM0noT9bVof3QYDmUFqMDmooJvJn.diag
[2025-10-30 07:55:21] -rw-r--r-- 1 boinc boinc     12132 Oct 30 07:55 stderr.txt
[2025-10-30 07:55:21] HITS file was successfully produced:
[2025-10-30 07:55:21] -rw------- 1 boinc boinc 174444708 Oct 30 07:54 shared/HITS.pool.root.1
[2025-10-30 07:55:21]  *** Contents of shared directory: ***
[2025-10-30 07:55:21] total 382724
[2025-10-30 07:55:21] -rw-r--r-- 2 boinc boinc 215968351 Oct 30 06:45 ATLAS.root_0
[2025-10-30 07:55:21] -rw-r--r-- 2 boinc boinc    569681 Oct 30 06:45 input.tar.gz
[2025-10-30 07:55:21] -rw-r--r-- 2 boinc boinc     15120 Oct 30 06:45 start_atlas.sh
[2025-10-30 07:55:21] -rw------- 1 boinc boinc 174444708 Oct 30 07:54 HITS.pool.root.1
[2025-10-30 07:55:21] -rw------- 1 boinc boinc    890880 Oct 30 07:55 result.tar.gz
07:55:23 (2529201): run_atlas exited; CPU time 11898.769991
07:55:23 (2529201): called boinc_finish(0)

</stderr_txt>
]]>

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