Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:10:51 (2381832): wrapper (7.7.26015): starting
23:10:51 (2381832): wrapper: running run_atlas (--nthreads 3)
[2025-10-29 23:10:51] Arguments: --nthreads 3
[2025-10-29 23:10:51] Threads: 3
[2025-10-29 23:10:51] Checking for CVMFS
[2025-10-29 23:10:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-29 23:10:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-29 23:10:51] Running cvmfs_config stat atlas.cern.ch
[2025-10-29 23:10:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-29 23:10:51] 2.9.2.0 2087405 869 69744 152278 0 57 33354580 36864001 0 130560 0 785869 99.988 32589 2102 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-29 23:10:51] CVMFS is ok
[2025-10-29 23:10:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-29 23:10:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-29 23:10:51] Further information can be found at the LHC@home message board.
[2025-10-29 23:10:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-29 23:10:51] Checking for apptainer binary...
[2025-10-29 23:10:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-29 23:10:51] Running /usr/bin/apptainer --version
[2025-10-29 23:10:51] apptainer version 1.4.1-1.1
[2025-10-29 23:10:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-29 23:10:51] magicA161a
[2025-10-29 23:10:51] apptainer works
[2025-10-29 23:10:51] Set ATHENA_PROC_NUMBER=3
[2025-10-29 23:10:51] Set ATHENA_CORE_NUMBER=3
[2025-10-29 23:10:51] Starting ATLAS job with PandaID=6864767166
[2025-10-29 23:10:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-30 00:23:07]  *** The last 200 lines of the pilot log: ***
[2025-10-30 00:23:07] 2025-10-29 23:22:32,404 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-30 00:23:07] 2025-10-29 23:22:32,404 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-30 00:23:07] 2025-10-29 23:22:32,404 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-30 00:23:07] 2025-10-29 23:22:32,404 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-30 00:23:07] 2025-10-29 23:22:32,404 | INFO     | job 6864767166 has completed (purged errors)
[2025-10-30 00:23:07] 2025-10-29 23:22:32,404 | INFO     | overall cleanup function is called
[2025-10-30 00:23:07] 2025-10-29 23:22:33,411 | INFO     | --- collectZombieJob: --- 10, [2391988]
[2025-10-30 00:23:07] 2025-10-29 23:22:33,411 | INFO     | zombie collector waiting for pid 2391988
[2025-10-30 00:23:07] 2025-10-29 23:22:33,411 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-30 00:23:07] 2025-10-29 23:22:33,411 | INFO     | collected zombie processes
[2025-10-30 00:23:07] 2025-10-29 23:22:33,411 | INFO     | will attempt to kill all subprocesses of pid=2391988
[2025-10-30 00:23:07] 2025-10-29 23:22:33,454 | INFO     | process IDs to be killed: [2391988] (in reverse order)
[2025-10-30 00:23:07] 2025-10-29 23:22:33,477 | WARNING  | found no corresponding commands to process id(s)
[2025-10-30 00:23:07] 2025-10-29 23:22:33,478 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-30 00:23:07] 2025-10-29 23:22:33,479 | INFO     | did not find any defunct processes belonging to 2391988
[2025-10-30 00:23:07] 2025-10-29 23:22:33,480 | INFO     | did not find any defunct processes belonging to 2391988
[2025-10-30 00:23:07] 2025-10-29 23:22:33,480 | INFO     | ready for new job
[2025-10-30 00:23:07] 2025-10-29 23:22:33,480 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-30 00:23:07] 2025-10-29 23:22:33,480 | INFO     | ***************************************
[2025-10-30 00:23:07] 2025-10-29 23:22:33,481 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-30 00:23:07] 2025-10-29 23:22:33,481 | INFO     | ***************************************
[2025-10-30 00:23:07] 2025-10-29 23:22:33,481 | INFO     | 
[2025-10-30 00:23:07] 2025-10-29 23:22:33,481 | INFO     | architecture information:
[2025-10-30 00:23:07] 2025-10-29 23:22:33,481 | INFO     | executing command: cat /etc/os-release
[2025-10-30 00:23:07] 2025-10-29 23:22:33,489 | INFO     | cat /etc/os-release:
[2025-10-30 00:23:07] NAME="CentOS Linux"
[2025-10-30 00:23:07] VERSION="7 (Core)"
[2025-10-30 00:23:07] ID="centos"
[2025-10-30 00:23:07] ID_LIKE="rhel fedora"
[2025-10-30 00:23:07] VERSION_ID="7"
[2025-10-30 00:23:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-30 00:23:07] ANSI_COLOR="0;31"
[2025-10-30 00:23:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-30 00:23:07] HOME_URL="https://www.centos.org/"
[2025-10-30 00:23:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-30 00:23:07] 
[2025-10-30 00:23:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-30 00:23:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-30 00:23:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-30 00:23:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-30 00:23:07] 
[2025-10-30 00:23:07] 2025-10-29 23:22:33,489 | INFO     | ***************************************
[2025-10-30 00:23:07] 2025-10-29 23:22:33,993 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-30 00:23:07] 2025-10-29 23:22:34,005 | INFO     | sufficient remaining disk space (371708657664 B)
[2025-10-30 00:23:07] 2025-10-29 23:22:34,005 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-30 00:23:07] 2025-10-29 23:22:34,005 | INFO     | current server update state: UPDATING_FINAL
[2025-10-30 00:23:07] 2025-10-29 23:22:34,005 | INFO     | update_server=False
[2025-10-30 00:23:07] 2025-10-29 23:22:34,005 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-30 00:23:07] 2025-10-29 23:22:34,005 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-30 00:23:07] 2025-10-29 23:22:34,005 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-30 00:23:07] 2025-10-29 23:22:34,273 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-30 00:23:07] 2025-10-29 23:22:34,273 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-30 00:23:07] 2025-10-29 23:22:34,273 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-30 00:23:07] 2025-10-29 23:22:34,273 | INFO     | will abort loop
[2025-10-30 00:23:07] 2025-10-29 23:22:34,406 | INFO     | all job control threads have been joined
[2025-10-30 00:23:07] 2025-10-29 23:22:34,817 | INFO     | all data control threads have been joined
[2025-10-30 00:23:07] 2025-10-29 23:22:35,011 | INFO     | [job] retrieve thread has finished
[2025-10-30 00:23:07] 2025-10-29 23:22:35,011 | INFO     | [job] queue monitor thread has finished
[2025-10-30 00:23:07] 2025-10-29 23:22:35,041 | INFO     | [data] copytool_in thread has finished
[2025-10-30 00:23:07] 2025-10-29 23:22:35,279 | INFO     | [job] job monitor thread has finished
[2025-10-30 00:23:07] 2025-10-29 23:22:35,412 | INFO     | [job] control thread has finished
[2025-10-30 00:23:07] 2025-10-29 23:22:35,453 | INFO     | all payload control threads have been joined
[2025-10-30 00:23:07] 2025-10-29 23:22:35,629 | INFO     | [payload] execute_payloads thread has finished
[2025-10-30 00:23:07] 2025-10-29 23:22:35,779 | INFO     | [payload] failed_post thread has finished
[2025-10-30 00:23:07] 2025-10-29 23:22:35,822 | INFO     | [data] control thread has finished
[2025-10-30 00:23:07] 2025-10-29 23:22:35,965 | INFO     | [job] create_data_payload thread has finished
[2025-10-30 00:23:07] 2025-10-29 23:22:35,977 | INFO     | [job] validate thread has finished
[2025-10-30 00:23:07] 2025-10-29 23:22:35,983 | INFO     | [payload] validate_pre thread has finished
[2025-10-30 00:23:07] 2025-10-29 23:22:36,011 | INFO     | [data] copytool_out thread has finished
[2025-10-30 00:23:07] 2025-10-29 23:22:36,301 | INFO     | [payload] validate_post thread has finished
[2025-10-30 00:23:07] 2025-10-29 23:22:36,458 | INFO     | [payload] control thread has finished
[2025-10-30 00:23:07] 2025-10-29 23:22:36,500 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-30 00:23:07] 2025-10-29 23:22:40,506 | INFO     | [data] queue_monitor thread has finished
[2025-10-30 00:23:07] 2025-10-29 23:22:44,842 | INFO     | job.realtimelogging is not enabled
[2025-10-30 00:23:07] 2025-10-29 23:22:45,848 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-30 00:23:07] 2025-10-29 23:23:01,558 | INFO     | [monitor] cgroup control has ended
[2025-10-30 00:23:07] 2025-10-29 23:23:02,378 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140010971727680)>', '<ExcThread(monitor, started 140010347026176)>']
[2025-10-30 00:23:07] 2025-10-29 23:23:04,230 | INFO     | PID=2385555 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-30 00:23:07] 2025-10-29 23:23:04,230 | INFO     | found 0 job(s) in 20 queues
[2025-10-30 00:23:07] 2025-10-29 23:23:04,230 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-30 00:23:07] 2025-10-29 23:23:04,230 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-30 00:23:07] 2025-10-29 23:23:04,230 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-30 00:23:07] 2025-10-29 23:23:04,230 | INFO     | [monitor] control thread has ended
[2025-10-30 00:23:07] 2025-10-29 23:23:07,404 | INFO     | all workflow threads have been joined
[2025-10-30 00:23:07] 2025-10-29 23:23:07,404 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-30 00:23:07] 2025-10-29 23:23:07,404 | INFO     | traces error code: 0
[2025-10-30 00:23:07] 2025-10-29 23:23:07,404 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-30 00:23:07] 2025-10-29 23:23:07,454 [wrapper] ==== pilot stdout END ====
[2025-10-30 00:23:07] 2025-10-29 23:23:07,457 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-30 00:23:07] 2025-10-29 23:23:07,459 [wrapper] pilotpid: 2385555
[2025-10-30 00:23:07] 2025-10-29 23:23:07,461 [wrapper] Pilot exit status: 0
[2025-10-30 00:23:07] 2025-10-29 23:23:07,468 [wrapper] pandaids: 6864767166
[2025-10-30 00:23:07] 2025-10-29 23:23:07,484 [wrapper] cleanup supervisor_pilot 2401668 2385556
[2025-10-30 00:23:07] 2025-10-29 23:23:07,486 [wrapper] Test setup, not cleaning
[2025-10-30 00:23:07] 2025-10-29 23:23:07,488 [wrapper] apfmon messages muted
[2025-10-30 00:23:07] 2025-10-29 23:23:07,491 [wrapper] ==== wrapper stdout END ====
[2025-10-30 00:23:07] 2025-10-29 23:23:07,493 [wrapper] ==== wrapper stderr END ====
[2025-10-30 00:23:07]  *** Error codes and diagnostics ***
[2025-10-30 00:23:07]     "exeErrorCode": 0,
[2025-10-30 00:23:07]     "exeErrorDiag": "",
[2025-10-30 00:23:07]     "pilotErrorCode": 0,
[2025-10-30 00:23:07]     "pilotErrorDiag": "",
[2025-10-30 00:23:07]  *** Listing of results directory ***
[2025-10-30 00:23:07] total 391172
[2025-10-30 00:23:07] -rw-r--r-- 1 boinc boinc    557409 Oct 29 14:30 pilot3.tar.gz
[2025-10-30 00:23:07] -rw-r--r-- 1 boinc boinc      5112 Oct 29 14:39 queuedata.json
[2025-10-30 00:23:07] -rwx------ 1 boinc boinc     36292 Oct 29 14:40 runpilot2-wrapper.sh
[2025-10-30 00:23:07] -rw-r--r-- 1 boinc boinc       100 Oct 29 23:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-30 00:23:07] -rwxr-xr-x 1 boinc boinc      7986 Oct 29 23:10 run_atlas
[2025-10-30 00:23:07] -rw-r--r-- 1 boinc boinc       105 Oct 29 23:10 job.xml
[2025-10-30 00:23:07] -rw-r--r-- 2 boinc boinc 213224130 Oct 29 23:10 EVNT.47081487._000741.pool.root.1
[2025-10-30 00:23:07] -rw-r--r-- 2 boinc boinc    569668 Oct 29 23:10 input.tar.gz
[2025-10-30 00:23:07] -rw-r--r-- 2 boinc boinc     15120 Oct 29 23:10 start_atlas.sh
[2025-10-30 00:23:07] drwxrwx--x 2 boinc boinc      4096 Oct 29 23:10 shared
[2025-10-30 00:23:07] -rw-r--r-- 1 boinc boinc         0 Oct 29 23:10 boinc_setup_complete
[2025-10-30 00:23:07] -rw-r--r-- 1 boinc boinc      6448 Oct 29 23:10 init_data.xml
[2025-10-30 00:23:07] -rw-r--r-- 1 boinc boinc         0 Oct 29 23:10 boinc_lockfile
[2025-10-30 00:23:07] -rw-r--r-- 1 boinc boinc      2524 Oct 29 23:10 pandaJob.out
[2025-10-30 00:23:07] -rw------- 1 boinc boinc    987214 Oct 29 23:10 agis_schedconf.cvmfs.json
[2025-10-30 00:23:07] -rw------- 1 boinc boinc   1560632 Oct 29 23:10 agis_ddmendpoints.agis.ALL.json
[2025-10-30 00:23:07] drwx------ 5 boinc boinc      4096 Oct 29 23:10 pilot3
[2025-10-30 00:23:07] -rw------- 1 boinc boinc 181686781 Oct 30 00:22 HITS.47081490._018503.pool.root.1
[2025-10-30 00:23:07] -rw-r--r-- 1 boinc boinc       529 Oct 30 00:22 boinc_task_state.xml
[2025-10-30 00:23:07] -rw------- 1 boinc boinc        95 Oct 30 00:22 pilot_heartbeat.json
[2025-10-30 00:23:07] -rw------- 1 boinc boinc      1013 Oct 30 00:22 memory_monitor_summary.json
[2025-10-30 00:23:07] -rw------- 1 boinc boinc    233280 Oct 30 00:22 log.47081490._018503.job.log.tgz.1
[2025-10-30 00:23:07] -rw------- 1 boinc boinc      7748 Oct 30 00:22 heartbeat.json
[2025-10-30 00:23:07] -rw-r--r-- 1 boinc boinc        27 Oct 30 00:22 wrapper_checkpoint.txt
[2025-10-30 00:23:07] -rw-r--r-- 1 boinc boinc      8192 Oct 30 00:22 boinc_mmap_file
[2025-10-30 00:23:07] -rw------- 1 boinc boinc      5010 Oct 30 00:23 pilotlog.txt
[2025-10-30 00:23:07] -rw------- 1 boinc boinc    638358 Oct 30 00:23 log.47081490._018503.job.log.1
[2025-10-30 00:23:07] -rw------- 1 boinc boinc       357 Oct 30 00:23 output.list
[2025-10-30 00:23:07] -rw-r--r-- 1 boinc boinc       620 Oct 30 00:23 runtime_log
[2025-10-30 00:23:07] -rw------- 1 boinc boinc    890880 Oct 30 00:23 result.tar.gz
[2025-10-30 00:23:07] -rw-r--r-- 1 boinc boinc      8797 Oct 30 00:23 runtime_log.err
[2025-10-30 00:23:07] -rw------- 1 boinc boinc       662 Oct 30 00:23 D4hKDmRaLY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmSZHODmMydoim.diag
[2025-10-30 00:23:07] -rw-r--r-- 1 boinc boinc     11538 Oct 30 00:23 stderr.txt
[2025-10-30 00:23:07] HITS file was successfully produced:
[2025-10-30 00:23:07] -rw------- 1 boinc boinc 181686781 Oct 30 00:22 shared/HITS.pool.root.1
[2025-10-30 00:23:07]  *** Contents of shared directory: ***
[2025-10-30 00:23:07] total 387116
[2025-10-30 00:23:07] -rw-r--r-- 2 boinc boinc 213224130 Oct 29 23:10 ATLAS.root_0
[2025-10-30 00:23:07] -rw-r--r-- 2 boinc boinc    569668 Oct 29 23:10 input.tar.gz
[2025-10-30 00:23:07] -rw-r--r-- 2 boinc boinc     15120 Oct 29 23:10 start_atlas.sh
[2025-10-30 00:23:07] -rw------- 1 boinc boinc 181686781 Oct 30 00:22 HITS.pool.root.1
[2025-10-30 00:23:07] -rw------- 1 boinc boinc    890880 Oct 30 00:23 result.tar.gz
00:23:08 (2381832): run_atlas exited; CPU time 12244.679248
00:23:08 (2381832): called boinc_finish(0)

</stderr_txt>
]]>

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