Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:46:45 (2333073): wrapper (7.7.26015): starting
20:46:45 (2333073): wrapper: running run_atlas (--nthreads 3)
[2025-10-29 20:46:45] Arguments: --nthreads 3
[2025-10-29 20:46:45] Threads: 3
[2025-10-29 20:46:45] Checking for CVMFS
[2025-10-29 20:46:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-29 20:46:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-29 20:46:45] Running cvmfs_config stat atlas.cern.ch
[2025-10-29 20:46:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-29 20:46:46] 2.9.2.0 2087405 725 68688 152275 0 56 33339130 36864000 0 130560 0 654908 99.989 27199 2366 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-29 20:46:46] CVMFS is ok
[2025-10-29 20:46:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-29 20:46:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-29 20:46:46] Further information can be found at the LHC@home message board.
[2025-10-29 20:46:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-29 20:46:46] Checking for apptainer binary...
[2025-10-29 20:46:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-29 20:46:46] Running /usr/bin/apptainer --version
[2025-10-29 20:46:46] apptainer version 1.4.1-1.1
[2025-10-29 20:46:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-29 20:46:46] magicA161a
[2025-10-29 20:46:46] apptainer works
[2025-10-29 20:46:46] Set ATHENA_PROC_NUMBER=3
[2025-10-29 20:46:46] Set ATHENA_CORE_NUMBER=3
[2025-10-29 20:46:46] Starting ATLAS job with PandaID=6864767507
[2025-10-29 20:46:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-29 22:00:04]  *** The last 200 lines of the pilot log: ***
[2025-10-29 22:00:04] 2025-10-29 20:59:26,268 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-29 22:00:04] 2025-10-29 20:59:26,268 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-29 22:00:04] 2025-10-29 20:59:26,268 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-29 22:00:04] 2025-10-29 20:59:26,268 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-29 22:00:04] 2025-10-29 20:59:26,268 | INFO     | job 6864767507 has completed (purged errors)
[2025-10-29 22:00:04] 2025-10-29 20:59:26,268 | INFO     | overall cleanup function is called
[2025-10-29 22:00:04] 2025-10-29 20:59:26,708 | INFO     | PID=2336800 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-29 22:00:04] 2025-10-29 20:59:27,275 | INFO     | --- collectZombieJob: --- 10, [2343229]
[2025-10-29 22:00:04] 2025-10-29 20:59:27,275 | INFO     | zombie collector waiting for pid 2343229
[2025-10-29 22:00:04] 2025-10-29 20:59:27,275 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-29 22:00:04] 2025-10-29 20:59:27,275 | INFO     | collected zombie processes
[2025-10-29 22:00:04] 2025-10-29 20:59:27,275 | INFO     | will attempt to kill all subprocesses of pid=2343229
[2025-10-29 22:00:04] 2025-10-29 20:59:27,317 | INFO     | process IDs to be killed: [2343229] (in reverse order)
[2025-10-29 22:00:04] 2025-10-29 20:59:27,341 | WARNING  | found no corresponding commands to process id(s)
[2025-10-29 22:00:04] 2025-10-29 20:59:27,341 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-29 22:00:04] 2025-10-29 20:59:27,342 | INFO     | did not find any defunct processes belonging to 2343229
[2025-10-29 22:00:04] 2025-10-29 20:59:27,343 | INFO     | did not find any defunct processes belonging to 2343229
[2025-10-29 22:00:04] 2025-10-29 20:59:27,343 | INFO     | ready for new job
[2025-10-29 22:00:04] 2025-10-29 20:59:27,343 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-29 22:00:04] 2025-10-29 20:59:27,344 | INFO     | ***************************************
[2025-10-29 22:00:04] 2025-10-29 20:59:27,344 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-29 22:00:04] 2025-10-29 20:59:27,344 | INFO     | ***************************************
[2025-10-29 22:00:04] 2025-10-29 20:59:27,344 | INFO     | 
[2025-10-29 22:00:04] 2025-10-29 20:59:27,344 | INFO     | architecture information:
[2025-10-29 22:00:04] 2025-10-29 20:59:27,344 | INFO     | executing command: cat /etc/os-release
[2025-10-29 22:00:04] 2025-10-29 20:59:27,352 | INFO     | cat /etc/os-release:
[2025-10-29 22:00:04] NAME="CentOS Linux"
[2025-10-29 22:00:04] VERSION="7 (Core)"
[2025-10-29 22:00:04] ID="centos"
[2025-10-29 22:00:04] ID_LIKE="rhel fedora"
[2025-10-29 22:00:04] VERSION_ID="7"
[2025-10-29 22:00:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-29 22:00:04] ANSI_COLOR="0;31"
[2025-10-29 22:00:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-29 22:00:04] HOME_URL="https://www.centos.org/"
[2025-10-29 22:00:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-29 22:00:04] 
[2025-10-29 22:00:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-29 22:00:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-29 22:00:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-29 22:00:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-29 22:00:04] 
[2025-10-29 22:00:04] 2025-10-29 20:59:27,353 | INFO     | ***************************************
[2025-10-29 22:00:04] 2025-10-29 20:59:27,856 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-29 22:00:04] 2025-10-29 20:59:27,869 | INFO     | sufficient remaining disk space (371304955904 B)
[2025-10-29 22:00:04] 2025-10-29 20:59:27,869 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-29 22:00:04] 2025-10-29 20:59:27,869 | INFO     | current server update state: UPDATING_FINAL
[2025-10-29 22:00:04] 2025-10-29 20:59:27,869 | INFO     | update_server=False
[2025-10-29 22:00:04] 2025-10-29 20:59:27,869 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-29 22:00:04] 2025-10-29 20:59:27,869 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-29 22:00:04] 2025-10-29 20:59:28,206 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-29 22:00:04] 2025-10-29 20:59:28,207 | INFO     | aborting loop
[2025-10-29 22:00:04] 2025-10-29 20:59:28,244 | INFO     | all data control threads have been joined
[2025-10-29 22:00:04] 2025-10-29 20:59:28,856 | INFO     | all job control threads have been joined
[2025-10-29 22:00:04] 2025-10-29 20:59:28,872 | INFO     | all payload control threads have been joined
[2025-10-29 22:00:04] 2025-10-29 20:59:28,875 | INFO     | [job] queue monitor thread has finished
[2025-10-29 22:00:04] 2025-10-29 20:59:28,875 | INFO     | [job] retrieve thread has finished
[2025-10-29 22:00:04] 2025-10-29 20:59:28,907 | INFO     | [job] create_data_payload thread has finished
[2025-10-29 22:00:04] 2025-10-29 20:59:28,907 | INFO     | [payload] validate_pre thread has finished
[2025-10-29 22:00:04] 2025-10-29 20:59:28,912 | INFO     | [job] validate thread has finished
[2025-10-29 22:00:04] 2025-10-29 20:59:29,150 | INFO     | [payload] execute_payloads thread has finished
[2025-10-29 22:00:04] 2025-10-29 20:59:29,212 | INFO     | [job] job monitor thread has finished
[2025-10-29 22:00:04] 2025-10-29 20:59:29,250 | INFO     | [data] control thread has finished
[2025-10-29 22:00:04] 2025-10-29 20:59:29,267 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-29 22:00:04] 2025-10-29 20:59:29,384 | INFO     | [payload] failed_post thread has finished
[2025-10-29 22:00:04] 2025-10-29 20:59:29,649 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-29 22:00:04] 2025-10-29 20:59:29,761 | INFO     | [data] copytool_in thread has finished
[2025-10-29 22:00:04] 2025-10-29 20:59:29,860 | INFO     | [job] control thread has finished
[2025-10-29 22:00:04] 2025-10-29 20:59:29,877 | INFO     | [payload] control thread has finished
[2025-10-29 22:00:04] 2025-10-29 20:59:29,991 | INFO     | [payload] validate_post thread has finished
[2025-10-29 22:00:04] 2025-10-29 20:59:31,273 | INFO     | [data] copytool_out thread has finished
[2025-10-29 22:00:04] 2025-10-29 20:59:33,656 | INFO     | [data] queue_monitor thread has finished
[2025-10-29 22:00:04] 2025-10-29 20:59:38,111 | INFO     | job.realtimelogging is not enabled
[2025-10-29 22:00:04] 2025-10-29 20:59:39,116 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-29 22:00:04] 2025-10-29 20:59:57,480 | INFO     | [monitor] cgroup control has ended
[2025-10-29 22:00:04] 2025-10-29 20:59:58,826 | INFO     | PID=2336800 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-29 22:00:04] 2025-10-29 20:59:58,826 | INFO     | found 0 job(s) in 20 queues
[2025-10-29 22:00:04] 2025-10-29 20:59:58,826 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-29 22:00:04] 2025-10-29 20:59:58,827 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-29 22:00:04] 2025-10-29 20:59:59,223 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140546347087680)>', '<ExcThread(monitor, started 140545993193216)>']
[2025-10-29 22:00:04] 2025-10-29 20:59:59,832 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-29 22:00:04] 2025-10-29 20:59:59,832 | INFO     | [monitor] control thread has ended
[2025-10-29 22:00:04] 2025-10-29 21:00:04,248 | INFO     | all workflow threads have been joined
[2025-10-29 22:00:04] 2025-10-29 21:00:04,248 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-29 22:00:04] 2025-10-29 21:00:04,249 | INFO     | traces error code: 0
[2025-10-29 22:00:04] 2025-10-29 21:00:04,249 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-29 22:00:04] 2025-10-29 21:00:04,298 [wrapper] ==== pilot stdout END ====
[2025-10-29 22:00:04] 2025-10-29 21:00:04,300 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-29 22:00:04] 2025-10-29 21:00:04,302 [wrapper] pilotpid: 2336800
[2025-10-29 22:00:04] 2025-10-29 21:00:04,305 [wrapper] Pilot exit status: 0
[2025-10-29 22:00:04] 2025-10-29 21:00:04,312 [wrapper] pandaids: 6864767507
[2025-10-29 22:00:04] 2025-10-29 21:00:04,328 [wrapper] cleanup supervisor_pilot 2352571 2336801
[2025-10-29 22:00:04] 2025-10-29 21:00:04,330 [wrapper] Test setup, not cleaning
[2025-10-29 22:00:04] 2025-10-29 21:00:04,332 [wrapper] apfmon messages muted
[2025-10-29 22:00:04] 2025-10-29 21:00:04,334 [wrapper] ==== wrapper stdout END ====
[2025-10-29 22:00:04] 2025-10-29 21:00:04,337 [wrapper] ==== wrapper stderr END ====
[2025-10-29 22:00:04]  *** Error codes and diagnostics ***
[2025-10-29 22:00:04]     "exeErrorCode": 0,
[2025-10-29 22:00:04]     "exeErrorDiag": "",
[2025-10-29 22:00:04]     "pilotErrorCode": 0,
[2025-10-29 22:00:04]     "pilotErrorDiag": "",
[2025-10-29 22:00:04]  *** Listing of results directory ***
[2025-10-29 22:00:04] total 392352
[2025-10-29 22:00:04] -rw-r--r-- 1 boinc boinc    557409 Oct 29 14:30 pilot3.tar.gz
[2025-10-29 22:00:04] -rw-r--r-- 1 boinc boinc      5112 Oct 29 14:48 queuedata.json
[2025-10-29 22:00:04] -rwx------ 1 boinc boinc     36292 Oct 29 14:50 runpilot2-wrapper.sh
[2025-10-29 22:00:04] -rw-r--r-- 1 boinc boinc       100 Oct 29 20:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-29 22:00:04] -rwxr-xr-x 1 boinc boinc      7986 Oct 29 20:46 run_atlas
[2025-10-29 22:00:04] -rw-r--r-- 1 boinc boinc       105 Oct 29 20:46 job.xml
[2025-10-29 22:00:04] -rw-r--r-- 2 boinc boinc 218479012 Oct 29 20:46 EVNT.47081487._000754.pool.root.1
[2025-10-29 22:00:04] -rw-r--r-- 2 boinc boinc    569675 Oct 29 20:46 input.tar.gz
[2025-10-29 22:00:04] -rw-r--r-- 2 boinc boinc     15120 Oct 29 20:46 start_atlas.sh
[2025-10-29 22:00:04] drwxrwx--x 2 boinc boinc      4096 Oct 29 20:46 shared
[2025-10-29 22:00:04] -rw-r--r-- 1 boinc boinc         0 Oct 29 20:46 boinc_setup_complete
[2025-10-29 22:00:04] -rw-r--r-- 1 boinc boinc      6448 Oct 29 20:46 init_data.xml
[2025-10-29 22:00:04] -rw-r--r-- 1 boinc boinc         0 Oct 29 20:46 boinc_lockfile
[2025-10-29 22:00:04] -rw-r--r-- 1 boinc boinc      2526 Oct 29 20:46 pandaJob.out
[2025-10-29 22:00:04] -rw------- 1 boinc boinc    986514 Oct 29 20:46 agis_schedconf.cvmfs.json
[2025-10-29 22:00:04] -rw------- 1 boinc boinc   1560632 Oct 29 20:46 agis_ddmendpoints.agis.ALL.json
[2025-10-29 22:00:04] drwx------ 5 boinc boinc      4096 Oct 29 20:46 pilot3
[2025-10-29 22:00:04] -rw------- 1 boinc boinc 177595110 Oct 29 21:59 HITS.47081490._018842.pool.root.1
[2025-10-29 22:00:04] -rw-r--r-- 1 boinc boinc       529 Oct 29 21:59 boinc_task_state.xml
[2025-10-29 22:00:04] -rw------- 1 boinc boinc        95 Oct 29 21:59 pilot_heartbeat.json
[2025-10-29 22:00:04] -rw------- 1 boinc boinc      1027 Oct 29 21:59 memory_monitor_summary.json
[2025-10-29 22:00:04] -rw------- 1 boinc boinc    250338 Oct 29 21:59 log.47081490._018842.job.log.tgz.1
[2025-10-29 22:00:04] -rw------- 1 boinc boinc      7753 Oct 29 21:59 heartbeat.json
[2025-10-29 22:00:04] -rw-r--r-- 1 boinc boinc        27 Oct 29 21:59 wrapper_checkpoint.txt
[2025-10-29 22:00:04] -rw-r--r-- 1 boinc boinc      8192 Oct 29 21:59 boinc_mmap_file
[2025-10-29 22:00:04] -rw------- 1 boinc boinc      4824 Oct 29 22:00 pilotlog.txt
[2025-10-29 22:00:04] -rw------- 1 boinc boinc    646799 Oct 29 22:00 log.47081490._018842.job.log.1
[2025-10-29 22:00:04] -rw------- 1 boinc boinc       357 Oct 29 22:00 output.list
[2025-10-29 22:00:04] -rw-r--r-- 1 boinc boinc       620 Oct 29 22:00 runtime_log
[2025-10-29 22:00:04] -rw------- 1 boinc boinc    911360 Oct 29 22:00 result.tar.gz
[2025-10-29 22:00:04] -rw-r--r-- 1 boinc boinc      8797 Oct 29 22:00 runtime_log.err
[2025-10-29 22:00:04] -rw------- 1 boinc boinc       662 Oct 29 22:00 c3yLDmTkLY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm7cHODmpIxG0n.diag
[2025-10-29 22:00:04] -rw-r--r-- 1 boinc boinc     11531 Oct 29 22:00 stderr.txt
[2025-10-29 22:00:04] HITS file was successfully produced:
[2025-10-29 22:00:04] -rw------- 1 boinc boinc 177595110 Oct 29 21:59 shared/HITS.pool.root.1
[2025-10-29 22:00:04]  *** Contents of shared directory: ***
[2025-10-29 22:00:04] total 388272
[2025-10-29 22:00:04] -rw-r--r-- 2 boinc boinc 218479012 Oct 29 20:46 ATLAS.root_0
[2025-10-29 22:00:04] -rw-r--r-- 2 boinc boinc    569675 Oct 29 20:46 input.tar.gz
[2025-10-29 22:00:04] -rw-r--r-- 2 boinc boinc     15120 Oct 29 20:46 start_atlas.sh
[2025-10-29 22:00:04] -rw------- 1 boinc boinc 177595110 Oct 29 21:59 HITS.pool.root.1
[2025-10-29 22:00:04] -rw------- 1 boinc boinc    911360 Oct 29 22:00 result.tar.gz
22:00:06 (2333073): run_atlas exited; CPU time 12376.095978
22:00:06 (2333073): called boinc_finish(0)

</stderr_txt>
]]>

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