Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:18:27 (2283343): wrapper (7.7.26015): starting
18:18:27 (2283343): wrapper: running run_atlas (--nthreads 3)
[2025-10-29 18:18:27] Arguments: --nthreads 3
[2025-10-29 18:18:27] Threads: 3
[2025-10-29 18:18:27] Checking for CVMFS
[2025-10-29 18:18:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-29 18:18:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-29 18:18:27] Running cvmfs_config stat atlas.cern.ch
[2025-10-29 18:18:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-29 18:18:27] 2.9.2.0 2087405 576 67628 152272 0 56 33327750 36864000 0 130560 0 523900 99.988 23120 2989 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-29 18:18:27] CVMFS is ok
[2025-10-29 18:18:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-29 18:18:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-29 18:18:27] Further information can be found at the LHC@home message board.
[2025-10-29 18:18:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-29 18:18:27] Checking for apptainer binary...
[2025-10-29 18:18:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-29 18:18:27] Running /usr/bin/apptainer --version
[2025-10-29 18:18:27] apptainer version 1.4.1-1.1
[2025-10-29 18:18:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-29 18:18:27] magicA161a
[2025-10-29 18:18:27] apptainer works
[2025-10-29 18:18:27] Set ATHENA_PROC_NUMBER=3
[2025-10-29 18:18:27] Set ATHENA_CORE_NUMBER=3
[2025-10-29 18:18:27] Starting ATLAS job with PandaID=6864762238
[2025-10-29 18:18:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-29 19:32:46]  *** The last 200 lines of the pilot log: ***
[2025-10-29 19:32:46] 2025-10-29 18:32:14,560 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-29 19:32:46] 2025-10-29 18:32:14,560 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-29 19:32:46] 2025-10-29 18:32:14,560 | INFO     | job 6864762238 has completed (purged errors)
[2025-10-29 19:32:46] 2025-10-29 18:32:14,560 | INFO     | overall cleanup function is called
[2025-10-29 19:32:46] 2025-10-29 18:32:15,567 | INFO     | --- collectZombieJob: --- 10, [2293503]
[2025-10-29 19:32:46] 2025-10-29 18:32:15,567 | INFO     | zombie collector waiting for pid 2293503
[2025-10-29 19:32:46] 2025-10-29 18:32:15,567 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-29 19:32:46] 2025-10-29 18:32:15,567 | INFO     | collected zombie processes
[2025-10-29 19:32:46] 2025-10-29 18:32:15,567 | INFO     | will attempt to kill all subprocesses of pid=2293503
[2025-10-29 19:32:46] 2025-10-29 18:32:15,610 | INFO     | process IDs to be killed: [2293503] (in reverse order)
[2025-10-29 19:32:46] 2025-10-29 18:32:15,633 | WARNING  | found no corresponding commands to process id(s)
[2025-10-29 19:32:46] 2025-10-29 18:32:15,633 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-29 19:32:46] 2025-10-29 18:32:15,634 | INFO     | did not find any defunct processes belonging to 2293503
[2025-10-29 19:32:46] 2025-10-29 18:32:15,636 | INFO     | did not find any defunct processes belonging to 2293503
[2025-10-29 19:32:46] 2025-10-29 18:32:15,636 | INFO     | ready for new job
[2025-10-29 19:32:46] 2025-10-29 18:32:15,636 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-29 19:32:46] 2025-10-29 18:32:15,636 | INFO     | ***************************************
[2025-10-29 19:32:46] 2025-10-29 18:32:15,636 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-29 19:32:46] 2025-10-29 18:32:15,636 | INFO     | ***************************************
[2025-10-29 19:32:46] 2025-10-29 18:32:15,637 | INFO     | 
[2025-10-29 19:32:46] 2025-10-29 18:32:15,637 | INFO     | architecture information:
[2025-10-29 19:32:46] 2025-10-29 18:32:15,637 | INFO     | executing command: cat /etc/os-release
[2025-10-29 19:32:46] 2025-10-29 18:32:15,645 | INFO     | cat /etc/os-release:
[2025-10-29 19:32:46] NAME="CentOS Linux"
[2025-10-29 19:32:46] VERSION="7 (Core)"
[2025-10-29 19:32:46] ID="centos"
[2025-10-29 19:32:46] ID_LIKE="rhel fedora"
[2025-10-29 19:32:46] VERSION_ID="7"
[2025-10-29 19:32:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-29 19:32:46] ANSI_COLOR="0;31"
[2025-10-29 19:32:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-29 19:32:46] HOME_URL="https://www.centos.org/"
[2025-10-29 19:32:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-29 19:32:46] 
[2025-10-29 19:32:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-29 19:32:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-29 19:32:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-29 19:32:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-29 19:32:46] 
[2025-10-29 19:32:46] 2025-10-29 18:32:15,645 | INFO     | ***************************************
[2025-10-29 19:32:46] 2025-10-29 18:32:16,149 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-29 19:32:46] 2025-10-29 18:32:16,161 | INFO     | sufficient remaining disk space (371318587392 B)
[2025-10-29 19:32:46] 2025-10-29 18:32:16,161 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-29 19:32:46] 2025-10-29 18:32:16,161 | INFO     | current server update state: UPDATING_FINAL
[2025-10-29 19:32:46] 2025-10-29 18:32:16,162 | INFO     | update_server=False
[2025-10-29 19:32:46] 2025-10-29 18:32:16,162 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-29 19:32:46] 2025-10-29 18:32:16,162 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-29 19:32:46] 2025-10-29 18:32:16,458 | INFO     | all payload control threads have been joined
[2025-10-29 19:32:46] 2025-10-29 18:32:16,746 | INFO     | all job control threads have been joined
[2025-10-29 19:32:46] 2025-10-29 18:32:16,939 | INFO     | all data control threads have been joined
[2025-10-29 19:32:46] 2025-10-29 18:32:17,069 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-29 19:32:46] 2025-10-29 18:32:17,069 | INFO     | aborting loop
[2025-10-29 19:32:46] 2025-10-29 18:32:17,167 | INFO     | [job] queue monitor thread has finished
[2025-10-29 19:32:46] 2025-10-29 18:32:17,168 | INFO     | [job] retrieve thread has finished
[2025-10-29 19:32:46] 2025-10-29 18:32:17,463 | INFO     | [payload] control thread has finished
[2025-10-29 19:32:46] 2025-10-29 18:32:17,464 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-29 19:32:46] 2025-10-29 18:32:17,573 | INFO     | [data] copytool_in thread has finished
[2025-10-29 19:32:46] 2025-10-29 18:32:17,584 | INFO     | [payload] validate_post thread has finished
[2025-10-29 19:32:46] 2025-10-29 18:32:17,752 | INFO     | [job] control thread has finished
[2025-10-29 19:32:46] 2025-10-29 18:32:17,945 | INFO     | [data] control thread has finished
[2025-10-29 19:32:46] 2025-10-29 18:32:18,074 | INFO     | [job] job monitor thread has finished
[2025-10-29 19:32:46] 2025-10-29 18:32:18,106 | INFO     | [job] validate thread has finished
[2025-10-29 19:32:46] 2025-10-29 18:32:18,222 | INFO     | [job] create_data_payload thread has finished
[2025-10-29 19:32:46] 2025-10-29 18:32:18,260 | INFO     | [payload] execute_payloads thread has finished
[2025-10-29 19:32:46] 2025-10-29 18:32:18,269 | INFO     | [payload] validate_pre thread has finished
[2025-10-29 19:32:46] 2025-10-29 18:32:18,462 | INFO     | [payload] failed_post thread has finished
[2025-10-29 19:32:46] 2025-10-29 18:32:19,470 | INFO     | [data] copytool_out thread has finished
[2025-10-29 19:32:46] 2025-10-29 18:32:19,484 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-29 19:32:46] 2025-10-29 18:32:23,491 | INFO     | [data] queue_monitor thread has finished
[2025-10-29 19:32:46] 2025-10-29 18:32:26,190 | INFO     | job.realtimelogging is not enabled
[2025-10-29 19:32:46] 2025-10-29 18:32:27,196 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-29 19:32:46] 2025-10-29 18:32:38,523 | INFO     | [monitor] cgroup control has ended
[2025-10-29 19:32:46] 2025-10-29 18:32:39,595 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139741986842432)>', '<ExcThread(monitor, started 139741500524288)>']
[2025-10-29 19:32:46] 2025-10-29 18:32:44,620 | INFO     | all workflow threads have been joined
[2025-10-29 19:32:46] 2025-10-29 18:32:44,620 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-29 19:32:46] 2025-10-29 18:32:44,620 | INFO     | traces error code: 0
[2025-10-29 19:32:46] 2025-10-29 18:32:44,620 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-29 19:32:46] 2025-10-29 18:32:46,582 | INFO     | PID=2287070 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-29 19:32:46] 2025-10-29 18:32:46,582 | INFO     | found 0 job(s) in 20 queues
[2025-10-29 19:32:46] 2025-10-29 18:32:46,582 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-29 19:32:46] 2025-10-29 18:32:46,583 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-29 19:32:46] 2025-10-29 18:32:46,583 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-29 19:32:46] 2025-10-29 18:32:46,583 | INFO     | [monitor] control thread has ended
[2025-10-29 19:32:46] 2025-10-29 18:32:46,628 [wrapper] ==== pilot stdout END ====
[2025-10-29 19:32:46] 2025-10-29 18:32:46,630 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-29 19:32:46] 2025-10-29 18:32:46,632 [wrapper] pilotpid: 2287070
[2025-10-29 19:32:46] 2025-10-29 18:32:46,635 [wrapper] Pilot exit status: 0
[2025-10-29 19:32:46] 2025-10-29 18:32:46,642 [wrapper] pandaids: 6864762238
[2025-10-29 19:32:46] 2025-10-29 18:32:46,657 [wrapper] cleanup supervisor_pilot 2303146 2287071
[2025-10-29 19:32:46] 2025-10-29 18:32:46,660 [wrapper] Test setup, not cleaning
[2025-10-29 19:32:46] 2025-10-29 18:32:46,662 [wrapper] apfmon messages muted
[2025-10-29 19:32:46] 2025-10-29 18:32:46,664 [wrapper] ==== wrapper stdout END ====
[2025-10-29 19:32:46] 2025-10-29 18:32:46,667 [wrapper] ==== wrapper stderr END ====
[2025-10-29 19:32:46]  *** Error codes and diagnostics ***
[2025-10-29 19:32:46]     "exeErrorCode": 0,
[2025-10-29 19:32:46]     "exeErrorDiag": "",
[2025-10-29 19:32:46]     "pilotErrorCode": 0,
[2025-10-29 19:32:46]     "pilotErrorDiag": "",
[2025-10-29 19:32:46]  *** Listing of results directory ***
[2025-10-29 19:32:46] total 398312
[2025-10-29 19:32:46] -rw-r--r-- 1 boinc boinc    557409 Oct 29 13:45 pilot3.tar.gz
[2025-10-29 19:32:46] -rwx------ 1 boinc boinc     36292 Oct 29 13:51 runpilot2-wrapper.sh
[2025-10-29 19:32:46] -rw-r--r-- 1 boinc boinc      5112 Oct 29 13:53 queuedata.json
[2025-10-29 19:32:46] -rw-r--r-- 1 boinc boinc       100 Oct 29 18:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-29 19:32:46] -rwxr-xr-x 1 boinc boinc      7986 Oct 29 18:18 run_atlas
[2025-10-29 19:32:46] -rw-r--r-- 1 boinc boinc       105 Oct 29 18:18 job.xml
[2025-10-29 19:32:46] -rw-r--r-- 2 boinc boinc 215642300 Oct 29 18:18 EVNT.47081487._000646.pool.root.1
[2025-10-29 19:32:46] -rw-r--r-- 2 boinc boinc    569677 Oct 29 18:18 input.tar.gz
[2025-10-29 19:32:46] -rw-r--r-- 2 boinc boinc     15120 Oct 29 18:18 start_atlas.sh
[2025-10-29 19:32:46] drwxrwx--x 2 boinc boinc      4096 Oct 29 18:18 shared
[2025-10-29 19:32:46] -rw-r--r-- 1 boinc boinc         0 Oct 29 18:18 boinc_setup_complete
[2025-10-29 19:32:46] -rw-r--r-- 1 boinc boinc      6448 Oct 29 18:18 init_data.xml
[2025-10-29 19:32:46] -rw-r--r-- 1 boinc boinc         0 Oct 29 18:18 boinc_lockfile
[2025-10-29 19:32:46] -rw-r--r-- 1 boinc boinc      2527 Oct 29 18:18 pandaJob.out
[2025-10-29 19:32:46] -rw------- 1 boinc boinc    986512 Oct 29 18:18 agis_schedconf.cvmfs.json
[2025-10-29 19:32:46] -rw------- 1 boinc boinc   1560632 Oct 29 18:18 agis_ddmendpoints.agis.ALL.json
[2025-10-29 19:32:46] drwx------ 5 boinc boinc      4096 Oct 29 18:18 pilot3
[2025-10-29 19:32:46] -rw------- 1 boinc boinc 186530378 Oct 29 19:31 HITS.47081490._016161.pool.root.1
[2025-10-29 19:32:46] -rw-r--r-- 1 boinc boinc       529 Oct 29 19:31 boinc_task_state.xml
[2025-10-29 19:32:46] -rw------- 1 boinc boinc        95 Oct 29 19:31 pilot_heartbeat.json
[2025-10-29 19:32:46] -rw------- 1 boinc boinc      1016 Oct 29 19:32 memory_monitor_summary.json
[2025-10-29 19:32:46] -rw------- 1 boinc boinc    243013 Oct 29 19:32 log.47081490._016161.job.log.tgz.1
[2025-10-29 19:32:46] -rw------- 1 boinc boinc      7756 Oct 29 19:32 heartbeat.json
[2025-10-29 19:32:46] -rw-r--r-- 1 boinc boinc        27 Oct 29 19:32 wrapper_checkpoint.txt
[2025-10-29 19:32:46] -rw-r--r-- 1 boinc boinc      8192 Oct 29 19:32 boinc_mmap_file
[2025-10-29 19:32:46] -rw------- 1 boinc boinc       747 Oct 29 19:32 pilotlog.txt
[2025-10-29 19:32:46] -rw------- 1 boinc boinc    655000 Oct 29 19:32 log.47081490._016161.job.log.1
[2025-10-29 19:32:46] -rw------- 1 boinc boinc       357 Oct 29 19:32 output.list
[2025-10-29 19:32:46] -rw-r--r-- 1 boinc boinc       620 Oct 29 19:32 runtime_log
[2025-10-29 19:32:46] -rw------- 1 boinc boinc    921600 Oct 29 19:32 result.tar.gz
[2025-10-29 19:32:46] -rw-r--r-- 1 boinc boinc      8797 Oct 29 19:32 runtime_log.err
[2025-10-29 19:32:46] -rw------- 1 boinc boinc       662 Oct 29 19:32 nwXLDmVpKY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYEHODm3VboDm.diag
[2025-10-29 19:32:46] -rw-r--r-- 1 boinc boinc     11111 Oct 29 19:32 stderr.txt
[2025-10-29 19:32:46] HITS file was successfully produced:
[2025-10-29 19:32:46] -rw------- 1 boinc boinc 186530378 Oct 29 19:31 shared/HITS.pool.root.1
[2025-10-29 19:32:46]  *** Contents of shared directory: ***
[2025-10-29 19:32:46] total 394236
[2025-10-29 19:32:46] -rw-r--r-- 2 boinc boinc 215642300 Oct 29 18:18 ATLAS.root_0
[2025-10-29 19:32:46] -rw-r--r-- 2 boinc boinc    569677 Oct 29 18:18 input.tar.gz
[2025-10-29 19:32:46] -rw-r--r-- 2 boinc boinc     15120 Oct 29 18:18 start_atlas.sh
[2025-10-29 19:32:46] -rw------- 1 boinc boinc 186530378 Oct 29 19:31 HITS.pool.root.1
[2025-10-29 19:32:46] -rw------- 1 boinc boinc    921600 Oct 29 19:32 result.tar.gz
19:32:47 (2283343): run_atlas exited; CPU time 12618.940496
19:32:47 (2283343): called boinc_finish(0)

</stderr_txt>
]]>

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