Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:17:37 (2160559): wrapper (7.7.26015): starting
12:17:37 (2160559): wrapper: running run_atlas (--nthreads 3)
[2025-10-29 12:17:37] Arguments: --nthreads 3
[2025-10-29 12:17:37] Threads: 3
[2025-10-29 12:17:37] Checking for CVMFS
[2025-10-29 12:17:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-29 12:17:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-29 12:17:37] Running cvmfs_config stat atlas.cern.ch
[2025-10-29 12:17:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-29 12:17:37] 2.9.2.0 2087405 216 56308 152263 0 56 33258729 36864000 0 130560 0 196448 99.983 10882 2356 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-29 12:17:37] CVMFS is ok
[2025-10-29 12:17:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-29 12:17:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-29 12:17:37] Further information can be found at the LHC@home message board.
[2025-10-29 12:17:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-29 12:17:37] Checking for apptainer binary...
[2025-10-29 12:17:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-29 12:17:37] Running /usr/bin/apptainer --version
[2025-10-29 12:17:37] apptainer version 1.4.1-1.1
[2025-10-29 12:17:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-29 12:17:37] magicA161a
[2025-10-29 12:17:37] apptainer works
[2025-10-29 12:17:37] Set ATHENA_PROC_NUMBER=3
[2025-10-29 12:17:37] Set ATHENA_CORE_NUMBER=3
[2025-10-29 12:17:37] Starting ATLAS job with PandaID=6864337658
[2025-10-29 12:17:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-29 13:29:53]  *** The last 200 lines of the pilot log: ***
[2025-10-29 13:29:53] 2025-10-29 12:29:15,232 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-29 13:29:53] 2025-10-29 12:29:15,232 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-29 13:29:53] 2025-10-29 12:29:15,232 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-29 13:29:53] 2025-10-29 12:29:15,232 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-29 13:29:53] 2025-10-29 12:29:15,232 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-29 13:29:53] 2025-10-29 12:29:15,232 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-29 13:29:53] 2025-10-29 12:29:15,232 | INFO     | job 6864337658 has completed (purged errors)
[2025-10-29 13:29:53] 2025-10-29 12:29:15,232 | INFO     | overall cleanup function is called
[2025-10-29 13:29:53] 2025-10-29 12:29:16,239 | INFO     | --- collectZombieJob: --- 10, [2170711]
[2025-10-29 13:29:53] 2025-10-29 12:29:16,239 | INFO     | zombie collector waiting for pid 2170711
[2025-10-29 13:29:53] 2025-10-29 12:29:16,239 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-29 13:29:53] 2025-10-29 12:29:16,239 | INFO     | collected zombie processes
[2025-10-29 13:29:53] 2025-10-29 12:29:16,239 | INFO     | will attempt to kill all subprocesses of pid=2170711
[2025-10-29 13:29:53] 2025-10-29 12:29:16,282 | INFO     | process IDs to be killed: [2170711] (in reverse order)
[2025-10-29 13:29:53] 2025-10-29 12:29:16,306 | WARNING  | found no corresponding commands to process id(s)
[2025-10-29 13:29:53] 2025-10-29 12:29:16,306 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-29 13:29:53] 2025-10-29 12:29:16,307 | INFO     | did not find any defunct processes belonging to 2170711
[2025-10-29 13:29:53] 2025-10-29 12:29:16,308 | INFO     | did not find any defunct processes belonging to 2170711
[2025-10-29 13:29:53] 2025-10-29 12:29:16,308 | INFO     | ready for new job
[2025-10-29 13:29:53] 2025-10-29 12:29:16,308 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-29 13:29:53] 2025-10-29 12:29:16,309 | INFO     | ***************************************
[2025-10-29 13:29:53] 2025-10-29 12:29:16,309 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-29 13:29:53] 2025-10-29 12:29:16,309 | INFO     | ***************************************
[2025-10-29 13:29:53] 2025-10-29 12:29:16,309 | INFO     | 
[2025-10-29 13:29:53] 2025-10-29 12:29:16,309 | INFO     | architecture information:
[2025-10-29 13:29:53] 2025-10-29 12:29:16,310 | INFO     | executing command: cat /etc/os-release
[2025-10-29 13:29:53] 2025-10-29 12:29:16,318 | INFO     | cat /etc/os-release:
[2025-10-29 13:29:53] NAME="CentOS Linux"
[2025-10-29 13:29:53] VERSION="7 (Core)"
[2025-10-29 13:29:53] ID="centos"
[2025-10-29 13:29:53] ID_LIKE="rhel fedora"
[2025-10-29 13:29:53] VERSION_ID="7"
[2025-10-29 13:29:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-29 13:29:53] ANSI_COLOR="0;31"
[2025-10-29 13:29:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-29 13:29:53] HOME_URL="https://www.centos.org/"
[2025-10-29 13:29:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-29 13:29:53] 
[2025-10-29 13:29:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-29 13:29:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-29 13:29:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-29 13:29:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-29 13:29:53] 
[2025-10-29 13:29:53] 2025-10-29 12:29:16,318 | INFO     | ***************************************
[2025-10-29 13:29:53] 2025-10-29 12:29:16,821 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-29 13:29:53] 2025-10-29 12:29:16,833 | INFO     | sufficient remaining disk space (372239237120 B)
[2025-10-29 13:29:53] 2025-10-29 12:29:16,833 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-29 13:29:53] 2025-10-29 12:29:16,833 | INFO     | current server update state: UPDATING_FINAL
[2025-10-29 13:29:53] 2025-10-29 12:29:16,834 | INFO     | update_server=False
[2025-10-29 13:29:53] 2025-10-29 12:29:16,834 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-29 13:29:53] 2025-10-29 12:29:16,834 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-29 13:29:53] 2025-10-29 12:29:17,161 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-29 13:29:53] 2025-10-29 12:29:17,229 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-29 13:29:53] 2025-10-29 12:29:17,229 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-29 13:29:53] 2025-10-29 12:29:17,229 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-29 13:29:53] 2025-10-29 12:29:17,229 | INFO     | will abort loop
[2025-10-29 13:29:53] 2025-10-29 12:29:17,529 | INFO     | all data control threads have been joined
[2025-10-29 13:29:53] 2025-10-29 12:29:17,835 | INFO     | [job] queue monitor thread has finished
[2025-10-29 13:29:53] 2025-10-29 12:29:17,839 | INFO     | [job] retrieve thread has finished
[2025-10-29 13:29:53] 2025-10-29 12:29:17,946 | INFO     | [payload] execute_payloads thread has finished
[2025-10-29 13:29:53] 2025-10-29 12:29:18,005 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-29 13:29:53] 2025-10-29 12:29:18,213 | INFO     | [data] copytool_in thread has finished
[2025-10-29 13:29:53] 2025-10-29 12:29:18,235 | INFO     | [job] job monitor thread has finished
[2025-10-29 13:29:53] 2025-10-29 12:29:18,273 | INFO     | all payload control threads have been joined
[2025-10-29 13:29:53] 2025-10-29 12:29:18,443 | INFO     | [payload] failed_post thread has finished
[2025-10-29 13:29:53] 2025-10-29 12:29:18,534 | INFO     | [data] control thread has finished
[2025-10-29 13:29:53] 2025-10-29 12:29:18,540 | INFO     | all job control threads have been joined
[2025-10-29 13:29:53] 2025-10-29 12:29:18,713 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-29 13:29:53] 2025-10-29 12:29:18,733 | INFO     | [job] validate thread has finished
[2025-10-29 13:29:53] 2025-10-29 12:29:18,833 | INFO     | [payload] validate_pre thread has finished
[2025-10-29 13:29:53] 2025-10-29 12:29:18,836 | INFO     | [job] create_data_payload thread has finished
[2025-10-29 13:29:53] 2025-10-29 12:29:18,971 | INFO     | [payload] validate_post thread has finished
[2025-10-29 13:29:53] 2025-10-29 12:29:19,168 | INFO     | [data] copytool_out thread has finished
[2025-10-29 13:29:53] 2025-10-29 12:29:19,278 | INFO     | [payload] control thread has finished
[2025-10-29 13:29:53] 2025-10-29 12:29:19,545 | INFO     | [job] control thread has finished
[2025-10-29 13:29:53] 2025-10-29 12:29:22,012 | INFO     | [data] queue_monitor thread has finished
[2025-10-29 13:29:53] 2025-10-29 12:29:47,684 | INFO     | PID=2164282 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-29 13:29:53] 2025-10-29 12:29:47,684 | INFO     | found 0 job(s) in 20 queues
[2025-10-29 13:29:53] 2025-10-29 12:29:47,684 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-29 13:29:53] 2025-10-29 12:29:47,684 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-29 13:29:53] 2025-10-29 12:29:47,908 | INFO     | [monitor] cgroup control has ended
[2025-10-29 13:29:53] 2025-10-29 12:29:48,180 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140612224419648)>', '<ExcThread(monitor, started 140611432728320)>']
[2025-10-29 13:29:53] 2025-10-29 12:29:48,689 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-29 13:29:53] 2025-10-29 12:29:48,689 | INFO     | [monitor] control thread has ended
[2025-10-29 13:29:53] 2025-10-29 12:29:53,189 | INFO     | all workflow threads have been joined
[2025-10-29 13:29:53] 2025-10-29 12:29:53,190 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-29 13:29:53] 2025-10-29 12:29:53,190 | INFO     | traces error code: 0
[2025-10-29 13:29:53] 2025-10-29 12:29:53,190 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-29 13:29:53] 2025-10-29 12:29:53,240 [wrapper] ==== pilot stdout END ====
[2025-10-29 13:29:53] 2025-10-29 12:29:53,243 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-29 13:29:53] 2025-10-29 12:29:53,245 [wrapper] pilotpid: 2164282
[2025-10-29 13:29:53] 2025-10-29 12:29:53,247 [wrapper] Pilot exit status: 0
[2025-10-29 13:29:53] 2025-10-29 12:29:53,254 [wrapper] pandaids: 6864337658
[2025-10-29 13:29:53] 2025-10-29 12:29:53,270 [wrapper] cleanup supervisor_pilot 2180224 2164283
[2025-10-29 13:29:53] 2025-10-29 12:29:53,273 [wrapper] Test setup, not cleaning
[2025-10-29 13:29:53] 2025-10-29 12:29:53,275 [wrapper] apfmon messages muted
[2025-10-29 13:29:53] 2025-10-29 12:29:53,277 [wrapper] ==== wrapper stdout END ====
[2025-10-29 13:29:53] 2025-10-29 12:29:53,280 [wrapper] ==== wrapper stderr END ====
[2025-10-29 13:29:53]  *** Error codes and diagnostics ***
[2025-10-29 13:29:53]     "exeErrorCode": 0,
[2025-10-29 13:29:53]     "exeErrorDiag": "",
[2025-10-29 13:29:53]     "pilotErrorCode": 0,
[2025-10-29 13:29:53]     "pilotErrorDiag": "",
[2025-10-29 13:29:53]  *** Listing of results directory ***
[2025-10-29 13:29:53] total 389532
[2025-10-29 13:29:53] -rwx------ 1 boinc boinc     36292 Oct 29 07:14 runpilot2-wrapper.sh
[2025-10-29 13:29:53] -rw-r--r-- 1 boinc boinc    557409 Oct 29 07:14 pilot3.tar.gz
[2025-10-29 13:29:53] -rw-r--r-- 1 boinc boinc      5112 Oct 29 07:15 queuedata.json
[2025-10-29 13:29:53] -rw-r--r-- 1 boinc boinc       100 Oct 29 12:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-29 13:29:53] -rwxr-xr-x 1 boinc boinc      7986 Oct 29 12:17 run_atlas
[2025-10-29 13:29:53] -rw-r--r-- 1 boinc boinc       105 Oct 29 12:17 job.xml
[2025-10-29 13:29:53] -rw-r--r-- 2 boinc boinc 215053367 Oct 29 12:17 EVNT.47081487._000309.pool.root.1
[2025-10-29 13:29:53] -rw-r--r-- 2 boinc boinc    569675 Oct 29 12:17 input.tar.gz
[2025-10-29 13:29:53] -rw-r--r-- 2 boinc boinc     15120 Oct 29 12:17 start_atlas.sh
[2025-10-29 13:29:53] drwxrwx--x 2 boinc boinc      4096 Oct 29 12:17 shared
[2025-10-29 13:29:53] -rw-r--r-- 1 boinc boinc         0 Oct 29 12:17 boinc_setup_complete
[2025-10-29 13:29:53] -rw-r--r-- 1 boinc boinc      6448 Oct 29 12:17 init_data.xml
[2025-10-29 13:29:53] -rw-r--r-- 1 boinc boinc         0 Oct 29 12:17 boinc_lockfile
[2025-10-29 13:29:53] -rw-r--r-- 1 boinc boinc      2525 Oct 29 12:17 pandaJob.out
[2025-10-29 13:29:53] -rw------- 1 boinc boinc    982980 Oct 29 12:17 agis_schedconf.cvmfs.json
[2025-10-29 13:29:53] -rw------- 1 boinc boinc   1560632 Oct 29 12:17 agis_ddmendpoints.agis.ALL.json
[2025-10-29 13:29:53] drwx------ 5 boinc boinc      4096 Oct 29 12:17 pilot3
[2025-10-29 13:29:53] -rw------- 1 boinc boinc 178170215 Oct 29 13:28 HITS.47081490._007959.pool.root.1
[2025-10-29 13:29:53] -rw-r--r-- 1 boinc boinc       530 Oct 29 13:28 boinc_task_state.xml
[2025-10-29 13:29:53] -rw------- 1 boinc boinc        95 Oct 29 13:29 pilot_heartbeat.json
[2025-10-29 13:29:53] -rw------- 1 boinc boinc      1018 Oct 29 13:29 memory_monitor_summary.json
[2025-10-29 13:29:53] -rw------- 1 boinc boinc    239689 Oct 29 13:29 log.47081490._007959.job.log.tgz.1
[2025-10-29 13:29:53] -rw------- 1 boinc boinc      7758 Oct 29 13:29 heartbeat.json
[2025-10-29 13:29:53] -rw-r--r-- 1 boinc boinc        27 Oct 29 13:29 wrapper_checkpoint.txt
[2025-10-29 13:29:53] -rw-r--r-- 1 boinc boinc      8192 Oct 29 13:29 boinc_mmap_file
[2025-10-29 13:29:53] -rw------- 1 boinc boinc      4938 Oct 29 13:29 pilotlog.txt
[2025-10-29 13:29:53] -rw------- 1 boinc boinc    638233 Oct 29 13:29 log.47081490._007959.job.log.1
[2025-10-29 13:29:53] -rw------- 1 boinc boinc       357 Oct 29 13:29 output.list
[2025-10-29 13:29:53] -rw-r--r-- 1 boinc boinc       620 Oct 29 13:29 runtime_log
[2025-10-29 13:29:53] -rw------- 1 boinc boinc    901120 Oct 29 13:29 result.tar.gz
[2025-10-29 13:29:53] -rw-r--r-- 1 boinc boinc      8797 Oct 29 13:29 runtime_log.err
[2025-10-29 13:29:53] -rw------- 1 boinc boinc       662 Oct 29 13:29 C77NDm2cEY8n9Rq4apOajLDm4fhM0noT9bVof3QYDm1HoMDmkAAsfm.diag
[2025-10-29 13:29:53] -rw-r--r-- 1 boinc boinc     11649 Oct 29 13:29 stderr.txt
[2025-10-29 13:29:53] HITS file was successfully produced:
[2025-10-29 13:29:53] -rw------- 1 boinc boinc 178170215 Oct 29 13:28 shared/HITS.pool.root.1
[2025-10-29 13:29:53]  *** Contents of shared directory: ***
[2025-10-29 13:29:53] total 385476
[2025-10-29 13:29:53] -rw-r--r-- 2 boinc boinc 215053367 Oct 29 12:17 ATLAS.root_0
[2025-10-29 13:29:53] -rw-r--r-- 2 boinc boinc    569675 Oct 29 12:17 input.tar.gz
[2025-10-29 13:29:53] -rw-r--r-- 2 boinc boinc     15120 Oct 29 12:17 start_atlas.sh
[2025-10-29 13:29:53] -rw------- 1 boinc boinc 178170215 Oct 29 13:28 HITS.pool.root.1
[2025-10-29 13:29:53] -rw------- 1 boinc boinc    901120 Oct 29 13:29 result.tar.gz
13:29:55 (2160559): run_atlas exited; CPU time 12134.281894
13:29:55 (2160559): called boinc_finish(0)

</stderr_txt>
]]>

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