Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:15:18 (10775): wrapper (7.7.26015): starting
05:15:18 (10775): wrapper: running run_atlas (--nthreads 8)
[2025-10-28 05:15:18] Arguments: --nthreads 8
[2025-10-28 05:15:18] Threads: 8
[2025-10-28 05:15:18] Checking for CVMFS
[2025-10-28 05:15:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-28 05:15:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-28 05:15:19] Running cvmfs_config stat atlas.cern.ch
[2025-10-28 05:15:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-28 05:15:19] 2.11.2.0 2781 29656 80052 152220 3 1 13869244 20275201 1 130560 0 14738791 99.986 1137410 39611 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-28 05:15:19] CVMFS is ok
[2025-10-28 05:15:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-28 05:15:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-28 05:15:19] Further information can be found at the LHC@home message board.
[2025-10-28 05:15:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-28 05:15:19] Checking for apptainer binary...
[2025-10-28 05:15:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-28 05:15:19] Running /usr/bin/apptainer --version
[2025-10-28 05:15:19] apptainer version 1.3.2-1.el7
[2025-10-28 05:15:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-28 05:15:20] c-115-16.aglt2.org
[2025-10-28 05:15:20] apptainer works
[2025-10-28 05:15:20] Set ATHENA_PROC_NUMBER=8
[2025-10-28 05:15:20] Set ATHENA_CORE_NUMBER=8
[2025-10-28 05:15:20] Starting ATLAS job with PandaID=6855628306
[2025-10-28 05:15:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-28 07:12:57]  *** The last 200 lines of the pilot log: ***
[2025-10-28 07:12:57] 2025-10-28 11:11:55,478 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-28 07:12:57] 2025-10-28 11:11:55,479 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-28 07:12:57] 2025-10-28 11:11:55,479 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-28 07:12:57] 2025-10-28 11:11:55,482 | INFO     | fitting pss+swap vs Time
[2025-10-28 07:12:57] 2025-10-28 11:11:55,483 | INFO     | sum of square deviations: 459366752.5
[2025-10-28 07:12:57] 2025-10-28 11:11:55,483 | INFO     | sum of deviations: -5602981180.499999
[2025-10-28 07:12:57] 2025-10-28 11:11:55,484 | INFO     | mean x: 1761646416.5
[2025-10-28 07:12:57] 2025-10-28 11:11:55,484 | INFO     | mean y: 2616427.2719298247
[2025-10-28 07:12:57] 2025-10-28 11:11:55,484 | INFO     | -- intersect: 21489743357.17477
[2025-10-28 07:12:57] 2025-10-28 11:11:55,484 | INFO     | intersect: 21489743357.17477
[2025-10-28 07:12:57] 2025-10-28 11:11:55,484 | INFO     | chi2: 1.5586540571892833
[2025-10-28 07:12:57] 2025-10-28 11:11:55,485 | INFO     | sum of square deviations: 401533110.0
[2025-10-28 07:12:57] 2025-10-28 11:11:55,486 | INFO     | sum of deviations: -4127254692.999999
[2025-10-28 07:12:57] 2025-10-28 11:11:55,486 | INFO     | mean x: 1761646264.0
[2025-10-28 07:12:57] 2025-10-28 11:11:55,486 | INFO     | mean y: 2620321.0825688075
[2025-10-28 07:12:57] 2025-10-28 11:11:55,486 | INFO     | -- intersect: 18110125354.72703
[2025-10-28 07:12:57] 2025-10-28 11:11:55,486 | INFO     | intersect: 18110125354.72703
[2025-10-28 07:12:57] 2025-10-28 11:11:55,486 | INFO     | chi2: 1.5611358910524828
[2025-10-28 07:12:57] 2025-10-28 11:11:55,486 | INFO     | current chi2=1.5611358910524828 (change=-0.15922929477212155 %)
[2025-10-28 07:12:57] 2025-10-28 11:11:55,486 | INFO     | right removable region: 108
[2025-10-28 07:12:57] 2025-10-28 11:11:55,487 | INFO     | sum of square deviations: 401533110.0
[2025-10-28 07:12:57] 2025-10-28 11:11:55,487 | INFO     | sum of deviations: -22744468662.0
[2025-10-28 07:12:57] 2025-10-28 11:11:55,487 | INFO     | mean x: 1761646569.0
[2025-10-28 07:12:57] 2025-10-28 11:11:55,487 | INFO     | mean y: 2660724.2752293576
[2025-10-28 07:12:57] 2025-10-28 11:11:55,488 | INFO     | -- intersect: 99789488221.86395
[2025-10-28 07:12:57] 2025-10-28 11:11:55,488 | INFO     | intersect: 99789488221.86395
[2025-10-28 07:12:57] 2025-10-28 11:11:55,488 | INFO     | chi2: 0.11090139552653928
[2025-10-28 07:12:57] 2025-10-28 11:11:55,488 | INFO     | current chi2=0.11090139552653928 (change=92.88479730219755 %)
[2025-10-28 07:12:57] 2025-10-28 11:11:55,488 | INFO     | sum of square deviations: 348769330.0
[2025-10-28 07:12:57] 2025-10-28 11:11:55,489 | INFO     | sum of deviations: -22334673956.0
[2025-10-28 07:12:57] 2025-10-28 11:11:55,489 | INFO     | mean x: 1761646721.5
[2025-10-28 07:12:57] 2025-10-28 11:11:55,489 | INFO     | mean y: 2659416.653846154
[2025-10-28 07:12:57] 2025-10-28 11:11:55,489 | INFO     | -- intersect: 112815919545.80234
[2025-10-28 07:12:57] 2025-10-28 11:11:55,489 | INFO     | intersect: 112815919545.80234
[2025-10-28 07:12:57] 2025-10-28 11:11:55,489 | INFO     | chi2: 0.08269253850914925
[2025-10-28 07:12:57] 2025-10-28 11:11:55,489 | INFO     | current chi2=0.08269253850914925 (change=25.43598020877881 %)
[2025-10-28 07:12:57] 2025-10-28 11:11:55,490 | INFO     | sum of square deviations: 300842850.0
[2025-10-28 07:12:57] 2025-10-28 11:11:55,490 | INFO     | sum of deviations: -20331077106.000004
[2025-10-28 07:12:57] 2025-10-28 11:11:55,490 | INFO     | mean x: 1761646874.0
[2025-10-28 07:12:57] 2025-10-28 11:11:55,490 | INFO     | mean y: 2653029.232323232
[2025-10-28 07:12:57] 2025-10-28 11:11:55,490 | INFO     | -- intersect: 119055435665.87427
[2025-10-28 07:12:57] 2025-10-28 11:11:55,491 | INFO     | intersect: 119055435665.87427
[2025-10-28 07:12:57] 2025-10-28 11:11:55,491 | INFO     | chi2: 0.07926278679472192
[2025-10-28 07:12:57] 2025-10-28 11:11:55,491 | INFO     | current chi2=0.07926278679472192 (change=4.147595147351605 %)
[2025-10-28 07:12:57] 2025-10-28 11:11:55,491 | INFO     | left removable region: 30
[2025-10-28 07:12:57] 2025-10-28 11:11:55,491 | INFO     | sum of square deviations: 147126479.5
[2025-10-28 07:12:57] 2025-10-28 11:11:55,492 | INFO     | sum of deviations: -12105548819.999998
[2025-10-28 07:12:57] 2025-10-28 11:11:55,492 | INFO     | mean x: 1761647148.5
[2025-10-28 07:12:57] 2025-10-28 11:11:55,492 | INFO     | mean y: 2633562.1794871795
[2025-10-28 07:12:57] 2025-10-28 11:11:55,492 | INFO     | -- intersect: 144950746452.90176
[2025-10-28 07:12:57] 2025-10-28 11:11:55,492 | INFO     | intersect: 144950746452.90176
[2025-10-28 07:12:57] 2025-10-28 11:11:55,492 | INFO     | chi2: 0.06891784606442282
[2025-10-28 07:12:57] 2025-10-28 11:11:55,492 | INFO     | -- intersect: 144950746452.90176
[2025-10-28 07:12:57] 2025-10-28 11:11:55,493 | INFO     | current memory leak: -82.28 B/s (using 78 data points, chi2=0.07)
[2025-10-28 07:12:57] 2025-10-28 11:11:55,493 | INFO     | could have reported an average CPU frequency of 2109 MHz (7 samples)
[2025-10-28 07:12:57] 2025-10-28 11:11:55,493 | INFO     | ..............................
[2025-10-28 07:12:57] 2025-10-28 11:11:55,493 | INFO     | . Timing measurements:
[2025-10-28 07:12:57] 2025-10-28 11:11:55,493 | INFO     | . get job = 0 s
[2025-10-28 07:12:57] 2025-10-28 11:11:55,493 | INFO     | . initial setup = 2 s
[2025-10-28 07:12:57] 2025-10-28 11:11:55,493 | INFO     | . payload setup = 8 s
[2025-10-28 07:12:57] 2025-10-28 11:11:55,494 | INFO     | . stage-in = 0 s
[2025-10-28 07:12:57] 2025-10-28 11:11:55,494 | INFO     | . payload execution = 6939 s
[2025-10-28 07:12:57] 2025-10-28 11:11:55,494 | INFO     | . stage-out = 0 s
[2025-10-28 07:12:57] 2025-10-28 11:11:55,494 | INFO     | . log creation = 0 s
[2025-10-28 07:12:57] 2025-10-28 11:11:55,494 | INFO     | ..............................
[2025-10-28 07:12:57] 2025-10-28 11:11:55,861 | INFO     | 
[2025-10-28 07:12:57] 2025-10-28 11:11:55,862 | INFO     | job summary report
[2025-10-28 07:12:57] 2025-10-28 11:11:55,862 | INFO     | --------------------------------------------------
[2025-10-28 07:12:57] 2025-10-28 11:11:55,862 | INFO     | PanDA job id: 6855628306
[2025-10-28 07:12:57] 2025-10-28 11:11:55,862 | INFO     | task id: 46771637
[2025-10-28 07:12:57] 2025-10-28 11:11:55,862 | INFO     | errors: (none)
[2025-10-28 07:12:57] 2025-10-28 11:11:55,863 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-28 07:12:57] 2025-10-28 11:11:55,863 | INFO     | pilot state: finished 
[2025-10-28 07:12:57] 2025-10-28 11:11:55,863 | INFO     | transexitcode: 0
[2025-10-28 07:12:57] 2025-10-28 11:11:55,863 | INFO     | exeerrorcode: 0
[2025-10-28 07:12:57] 2025-10-28 11:11:55,863 | INFO     | exeerrordiag: 
[2025-10-28 07:12:57] 2025-10-28 11:11:55,864 | INFO     | exitcode: 0
[2025-10-28 07:12:57] 2025-10-28 11:11:55,864 | INFO     | exitmsg: OK
[2025-10-28 07:12:57] 2025-10-28 11:11:55,864 | INFO     | cpuconsumptiontime: 51618 s
[2025-10-28 07:12:57] 2025-10-28 11:11:55,864 | INFO     | nevents: 400
[2025-10-28 07:12:57] 2025-10-28 11:11:55,864 | INFO     | neventsw: 0
[2025-10-28 07:12:57] 2025-10-28 11:11:55,864 | INFO     | pid: 21556
[2025-10-28 07:12:57] 2025-10-28 11:11:55,865 | INFO     | pgrp: 21556
[2025-10-28 07:12:57] 2025-10-28 11:11:55,865 | INFO     | corecount: 8
[2025-10-28 07:12:57] 2025-10-28 11:11:55,865 | INFO     | event service: False
[2025-10-28 07:12:57] 2025-10-28 11:11:55,865 | INFO     | sizes: {0: 2348935, 6: 2349197, 11: 2349225, 6951: 2376453, 6952: 2385451, 6953: 2385507, 6959: 2385829}
[2025-10-28 07:12:57] 2025-10-28 11:11:55,865 | INFO     | --------------------------------------------------
[2025-10-28 07:12:57] 2025-10-28 11:11:55,865 | INFO     | 
[2025-10-28 07:12:57] 2025-10-28 11:11:55,866 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-28 07:12:57] 2025-10-28 11:11:55,894 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-28 07:12:57] 2025-10-28 11:11:55,894 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-28 07:12:57] 2025-10-28 11:11:55,894 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-28 07:12:57] 2025-10-28 11:11:55,894 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-28 07:12:57] 2025-10-28 11:11:55,895 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-28 07:12:57] 2025-10-28 11:11:55,895 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-28 07:12:57] 2025-10-28 11:11:55,895 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-28 07:12:57] 2025-10-28 11:11:55,895 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-28 07:12:57] 2025-10-28 11:11:55,895 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-28 07:12:57] 2025-10-28 11:11:55,895 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-28 07:12:57] 2025-10-28 11:11:55,896 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-28 07:12:57] 2025-10-28 11:11:55,896 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-28 07:12:57] 2025-10-28 11:11:55,896 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-28 07:12:57] 2025-10-28 11:11:55,896 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-28 07:12:57] 2025-10-28 11:11:55,896 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-28 07:12:57] 2025-10-28 11:11:55,897 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-28 07:12:57] 2025-10-28 11:11:55,897 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-28 07:12:57] 2025-10-28 11:11:55,897 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-28 07:12:57] 2025-10-28 11:11:55,897 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-28 07:12:57] 2025-10-28 11:11:55,897 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-28 07:12:57] 2025-10-28 11:11:55,897 | INFO     | job 6855628306 has completed (purged errors)
[2025-10-28 07:12:57] 2025-10-28 11:11:55,898 | INFO     | overall cleanup function is called
[2025-10-28 07:12:57] 2025-10-28 11:11:56,905 | INFO     | --- collectZombieJob: --- 10, [21556]
[2025-10-28 07:12:57] 2025-10-28 11:11:56,906 | INFO     | zombie collector waiting for pid 21556
[2025-10-28 07:12:57] 2025-10-28 11:11:56,906 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-28 07:12:57] 2025-10-28 11:11:56,906 | INFO     | collected zombie processes
[2025-10-28 07:12:57] 2025-10-28 11:11:56,906 | INFO     | will attempt to kill all subprocesses of pid=21556
[2025-10-28 07:12:57] 2025-10-28 11:11:56,993 | INFO     | process IDs to be killed: [21556] (in reverse order)
[2025-10-28 07:12:57] 2025-10-28 11:11:57,041 | WARNING  | found no corresponding commands to process id(s)
[2025-10-28 07:12:57] 2025-10-28 11:11:57,045 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-28 07:12:57] 2025-10-28 11:11:57,048 | INFO     | did not find any defunct processes belonging to 21556
[2025-10-28 07:12:57] 2025-10-28 11:11:57,051 | INFO     | did not find any defunct processes belonging to 21556
[2025-10-28 07:12:57] 2025-10-28 11:11:57,051 | INFO     | ready for new job
[2025-10-28 07:12:57] 2025-10-28 11:11:57,051 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-28 07:12:57] 2025-10-28 11:11:57,052 | INFO     | ***************************************
[2025-10-28 07:12:57] 2025-10-28 11:11:57,052 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-28 07:12:57] 2025-10-28 11:11:57,053 | INFO     | ***************************************
[2025-10-28 07:12:57] 2025-10-28 11:11:57,053 | INFO     | 
[2025-10-28 07:12:57] 2025-10-28 11:11:57,053 | INFO     | architecture information:
[2025-10-28 07:12:57] 2025-10-28 11:11:57,054 | INFO     | executing command: cat /etc/os-release
[2025-10-28 07:12:57] 2025-10-28 11:11:57,069 | INFO     | cat /etc/os-release:
[2025-10-28 07:12:57] NAME="CentOS Linux"
[2025-10-28 07:12:57] VERSION="7 (Core)"
[2025-10-28 07:12:57] ID="centos"
[2025-10-28 07:12:57] ID_LIKE="rhel fedora"
[2025-10-28 07:12:57] VERSION_ID="7"
[2025-10-28 07:12:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-28 07:12:57] ANSI_COLOR="0;31"
[2025-10-28 07:12:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-28 07:12:57] HOME_URL="https://www.centos.org/"
[2025-10-28 07:12:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-28 07:12:57] 
[2025-10-28 07:12:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-28 07:12:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-28 07:12:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-28 07:12:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-28 07:12:57] 
[2025-10-28 07:12:57] 2025-10-28 11:11:57,070 | INFO     | ***************************************
[2025-10-28 07:12:57] 2025-10-28 11:11:57,573 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-28 07:12:57] 2025-10-28 11:11:57,593 | INFO     | sufficient remaining disk space (18563989504 B)
[2025-10-28 07:12:57] 2025-10-28 11:11:57,593 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-28 07:12:57] 2025-10-28 11:11:57,594 | INFO     | current server update state: UPDATING_FINAL
[2025-10-28 07:12:57] 2025-10-28 11:11:57,594 | INFO     | update_server=False
[2025-10-28 07:12:57] 2025-10-28 11:11:57,594 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-28 07:12:57] 2025-10-28 11:11:57,594 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-28 07:12:57] 2025-10-28 11:11:57,595 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-28 07:12:57] 2025-10-28 11:11:57,595 | INFO     | aborting loop
[2025-10-28 07:12:57] 2025-10-28 11:11:57,848 | INFO     | all data control threads have been joined
[2025-10-28 07:12:57] 2025-10-28 11:11:58,600 | INFO     | [job] retrieve thread has finished
[2025-10-28 07:12:57] 2025-10-28 11:11:58,601 | INFO     | [job] job monitor thread has finished
[2025-10-28 07:12:57] 2025-10-28 11:11:58,669 | INFO     | all payload control threads have been joined
[2025-10-28 07:12:57] 2025-10-28 11:11:58,854 | INFO     | [data] control thread has finished
[2025-10-28 07:12:57] 2025-10-28 11:11:59,068 | INFO     | [job] create_data_payload thread has finished
[2025-10-28 07:12:57] 2025-10-28 11:11:59,122 | INFO     | [payload] validate_pre thread has finished
[2025-10-28 07:12:57] 2025-10-28 11:11:59,122 | INFO     | [payload] execute_payloads thread has finished
[2025-10-28 07:12:57] 2025-10-28 11:11:59,123 | INFO     | [data] copytool_in thread has finished
[2025-10-28 07:12:57] 2025-10-28 11:11:59,202 | INFO     | all job control threads have been joined
[2025-10-28 07:12:57] 2025-10-28 11:11:59,600 | INFO     | [data] copytool_out thread has finished
[2025-10-28 07:12:57] 2025-10-28 11:11:59,675 | INFO     | [payload] control thread has finished
[2025-10-28 07:12:57] 2025-10-28 11:11:59,886 | INFO     | [job] validate thread has finished
[2025-10-28 07:12:57] 2025-10-28 11:11:59,910 | INFO     | [payload] validate_post thread has finished
[2025-10-28 07:12:57] 2025-10-28 11:11:59,987 | INFO     | [payload] failed_post thread has finished
[2025-10-28 07:12:57] 2025-10-28 11:12:00,207 | INFO     | [job] control thread has finished
[2025-10-28 07:12:57] 2025-10-28 11:12:00,375 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-28 07:12:57] 2025-10-28 11:12:00,590 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-28 07:12:57] 2025-10-28 11:12:01,595 | INFO     | [job] queue monitor thread has finished
[2025-10-28 07:12:57] 2025-10-28 11:12:04,381 | INFO     | [data] queue_monitor thread has finished
[2025-10-28 07:12:57] 2025-10-28 11:12:08,127 | INFO     | job.realtimelogging is not enabled
[2025-10-28 07:12:57] 2025-10-28 11:12:09,133 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-28 07:12:57] 2025-10-28 11:12:28,372 | INFO     | PID=15154 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-28 07:12:57] 2025-10-28 11:12:28,372 | INFO     | found 0 job(s) in 20 queues
[2025-10-28 07:12:57] 2025-10-28 11:12:28,373 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-28 07:12:57] 2025-10-28 11:12:28,373 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-28 07:12:57] 2025-10-28 11:12:50,331 | INFO     | [monitor] cgroup control has ended
[2025-10-28 07:12:57] 2025-10-28 11:12:52,165 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140484906153792)>', '<ExcThread(monitor, started 140483841992448)>']
[2025-10-28 07:12:57] 2025-10-28 11:12:52,494 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-28 07:12:57] 2025-10-28 11:12:52,495 | INFO     | [monitor] control thread has ended
[2025-10-28 07:12:57] 2025-10-28 11:12:57,194 | INFO     | all workflow threads have been joined
[2025-10-28 07:12:57] 2025-10-28 11:12:57,194 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-28 07:12:57] 2025-10-28 11:12:57,195 | INFO     | traces error code: 0
[2025-10-28 07:12:57] 2025-10-28 11:12:57,196 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-28 07:12:57] 2025-10-28 11:12:57,305 [wrapper] ==== pilot stdout END ====
[2025-10-28 07:12:57] 2025-10-28 11:12:57,309 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-28 07:12:57] 2025-10-28 11:12:57,314 [wrapper] pilotpid: 15154
[2025-10-28 07:12:57] 2025-10-28 11:12:57,318 [wrapper] Pilot exit status: 0
[2025-10-28 07:12:57] 2025-10-28 11:12:57,336 [wrapper] pandaids: 6855628306
[2025-10-28 07:12:57] 2025-10-28 11:12:57,388 [wrapper] cleanup supervisor_pilot 29872 15155
[2025-10-28 07:12:57] 2025-10-28 11:12:57,392 [wrapper] Test setup, not cleaning
[2025-10-28 07:12:57] 2025-10-28 11:12:57,397 [wrapper] apfmon messages muted
[2025-10-28 07:12:57] 2025-10-28 11:12:57,402 [wrapper] ==== wrapper stdout END ====
[2025-10-28 07:12:57] 2025-10-28 11:12:57,407 [wrapper] ==== wrapper stderr END ====
[2025-10-28 07:12:57]  *** Error codes and diagnostics ***
[2025-10-28 07:12:57]     "exeErrorCode": 0,
[2025-10-28 07:12:57]     "exeErrorDiag": "",
[2025-10-28 07:12:57]     "pilotErrorCode": 0,
[2025-10-28 07:12:57]     "pilotErrorDiag": "",
[2025-10-28 07:12:57]  *** Listing of results directory ***
[2025-10-28 07:12:57] total 424312
[2025-10-28 07:12:57] -rw-r--r-- 1 boincer umatlas    557409 Oct 24 08:48 pilot3.tar.gz
[2025-10-28 07:12:57] -rw-r--r-- 1 boincer umatlas      5112 Oct 24 09:04 queuedata.json
[2025-10-28 07:12:57] -rwx------ 1 boincer umatlas     36292 Oct 24 09:07 runpilot2-wrapper.sh
[2025-10-28 07:12:57] -rw-r--r-- 1 boincer umatlas       100 Oct 28 05:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-28 07:12:57] -rwxr-xr-x 1 boincer umatlas      7986 Oct 28 05:15 run_atlas
[2025-10-28 07:12:57] -rw-r--r-- 1 boincer umatlas       105 Oct 28 05:15 job.xml
[2025-10-28 07:12:57] -rw-r--r-- 2 boincer umatlas 227840218 Oct 28 05:15 EVNT.46771634._004737.pool.root.1
[2025-10-28 07:12:57] -rw-r--r-- 2 boincer umatlas     15120 Oct 28 05:15 start_atlas.sh
[2025-10-28 07:12:57] drwxrwx--x 2 boincer umatlas      4096 Oct 28 05:15 shared
[2025-10-28 07:12:57] -rw-r--r-- 2 boincer umatlas    569690 Oct 28 05:15 input.tar.gz
[2025-10-28 07:12:57] -rw-r--r-- 1 boincer umatlas         0 Oct 28 05:15 boinc_lockfile
[2025-10-28 07:12:57] -rw-r--r-- 1 boincer umatlas      2562 Oct 28 05:15 pandaJob.out
[2025-10-28 07:12:57] -rw------- 1 boincer umatlas    980356 Oct 28 05:15 agis_schedconf.cvmfs.json
[2025-10-28 07:12:57] -rw------- 1 boincer umatlas   1560632 Oct 28 05:15 agis_ddmendpoints.agis.ALL.json
[2025-10-28 07:12:57] drwx------ 5 boincer umatlas      4096 Oct 28 05:15 pilot3
[2025-10-28 07:12:57] -rw------- 1 boincer umatlas 200059339 Oct 28 07:11 HITS.46771637._118856.pool.root.1
[2025-10-28 07:12:57] -rw-r--r-- 1 boincer umatlas       529 Oct 28 07:11 boinc_task_state.xml
[2025-10-28 07:12:57] -rw------- 1 boincer umatlas      1060 Oct 28 07:11 memory_monitor_summary.json
[2025-10-28 07:12:57] -rw------- 1 boincer umatlas    360801 Oct 28 07:11 log.46771637._118856.job.log.tgz.1
[2025-10-28 07:12:57] -rw-r--r-- 1 boincer umatlas      5909 Oct 28 07:11 init_data.xml
[2025-10-28 07:12:57] -rw------- 1 boincer umatlas      7847 Oct 28 07:11 heartbeat.json
[2025-10-28 07:12:57] -rw------- 1 boincer umatlas        95 Oct 28 07:12 pilot_heartbeat.json
[2025-10-28 07:12:57] -rw-r--r-- 1 boincer umatlas      8192 Oct 28 07:12 boinc_mmap_file
[2025-10-28 07:12:57] -rw-r--r-- 1 boincer umatlas        27 Oct 28 07:12 wrapper_checkpoint.txt
[2025-10-28 07:12:57] -rw------- 1 boincer umatlas      4818 Oct 28 07:12 pilotlog.txt
[2025-10-28 07:12:57] -rw------- 1 boincer umatlas    986124 Oct 28 07:12 log.46771637._118856.job.log.1
[2025-10-28 07:12:57] -rw------- 1 boincer umatlas       357 Oct 28 07:12 output.list
[2025-10-28 07:12:57] -rw-r--r-- 1 boincer umatlas       620 Oct 28 07:12 runtime_log
[2025-10-28 07:12:57] -rw------- 1 boincer umatlas   1361920 Oct 28 07:12 result.tar.gz
[2025-10-28 07:12:57] -rw------- 1 boincer umatlas       659 Oct 28 07:12 UuzNDmXhWW8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmEpBODmZD6gon.diag
[2025-10-28 07:12:57] -rw-r--r-- 1 boincer umatlas      8703 Oct 28 07:12 runtime_log.err
[2025-10-28 07:12:57] -rw-r--r-- 1 boincer umatlas     20852 Oct 28 07:12 stderr.txt
[2025-10-28 07:12:57] HITS file was successfully produced:
[2025-10-28 07:12:57] -rw------- 1 boincer umatlas 200059339 Oct 28 07:11 shared/HITS.pool.root.1
[2025-10-28 07:12:57]  *** Contents of shared directory: ***
[2025-10-28 07:12:57] total 419784
[2025-10-28 07:12:57] -rw-r--r-- 2 boincer umatlas 227840218 Oct 28 05:15 ATLAS.root_0
[2025-10-28 07:12:57] -rw-r--r-- 2 boincer umatlas     15120 Oct 28 05:15 start_atlas.sh
[2025-10-28 07:12:57] -rw-r--r-- 2 boincer umatlas    569690 Oct 28 05:15 input.tar.gz
[2025-10-28 07:12:57] -rw------- 1 boincer umatlas 200059339 Oct 28 07:11 HITS.pool.root.1
[2025-10-28 07:12:57] -rw------- 1 boincer umatlas   1361920 Oct 28 07:12 result.tar.gz
07:12:58 (10775): run_atlas exited; CPU time 51635.717732
07:12:58 (10775): called boinc_finish(0)

</stderr_txt>
]]>

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