Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:12:33 (841761): wrapper (7.7.26015): starting
17:12:33 (841761): wrapper: running run_atlas (--nthreads 10)
[2025-07-15 17:12:33] Arguments: --nthreads 10
[2025-07-15 17:12:33] Threads: 10
[2025-07-15 17:12:33] Checking for CVMFS
[2025-07-15 17:12:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-15 17:12:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-15 17:12:34] Running cvmfs_config stat atlas.cern.ch
[2025-07-15 17:12:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-15 17:12:34] 2.13.0.0 839487 10453 216600 148363 0 311 22355731 32935937 12852 16776704 0 34115893 99.664 28433000 30954 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-15 17:12:34] CVMFS is ok
[2025-07-15 17:12:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-15 17:12:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-15 17:12:34] Further information can be found at the LHC@home message board.
[2025-07-15 17:12:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-15 17:12:34] Checking for apptainer binary...
[2025-07-15 17:12:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-15 17:12:34] Running /usr/bin/apptainer --version
[2025-07-15 17:12:35] apptainer version 1.4.1-1.el9
[2025-07-15 17:12:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-15 17:12:35] c-6-3.aglt2.org
[2025-07-15 17:12:35] apptainer works
[2025-07-15 17:12:35] Set ATHENA_PROC_NUMBER=10
[2025-07-15 17:12:35] Set ATHENA_CORE_NUMBER=10
[2025-07-15 17:12:35] Starting ATLAS job with PandaID=6720780931
[2025-07-15 17:12:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-16 03:07:24]  *** The last 200 lines of the pilot log: ***
[2025-07-16 03:07:25] 2025-07-16 07:06:50,266 | INFO     | PID=848831 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-16 03:07:25] 2025-07-16 07:06:50,266 | INFO     | .. there are 41 such processes running
[2025-07-16 03:07:25] 2025-07-16 07:06:50,536 | INFO     | monitor loop #1852: job 0:6720780931 is in state 'finished'
[2025-07-16 03:07:25] 2025-07-16 07:06:50,536 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-16 03:07:25] 2025-07-16 07:06:50,807 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-16 03:07:25] 2025-07-16 07:06:50,820 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.154399999999
[2025-07-16 03:07:25] 2025-07-16 07:06:50,835 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6720780931/memory_monitor_summary.json (trf name=prmon)
[2025-07-16 03:07:25] 2025-07-16 07:06:50,835 | INFO     | extracted standard info from prmon json
[2025-07-16 03:07:25] 2025-07-16 07:06:50,835 | INFO     | extracted standard memory fields from prmon json
[2025-07-16 03:07:25] 2025-07-16 07:06:50,836 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-16 03:07:25] 2025-07-16 07:06:50,836 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-16 03:07:25] 2025-07-16 07:06:50,836 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-16 03:07:25] 2025-07-16 07:06:50,846 | INFO     | fitting pss+swap vs Time
[2025-07-16 03:07:25] 2025-07-16 07:06:50,847 | INFO     | sum of square deviations: 61125893433.292305
[2025-07-16 03:07:25] 2025-07-16 07:06:50,856 | INFO     | sum of deviations: 138865943222.48462
[2025-07-16 03:07:25] 2025-07-16 07:06:50,856 | INFO     | mean x: 1752631797.5189004
[2025-07-16 03:07:25] 2025-07-16 07:06:50,856 | INFO     | mean y: 2267916.819587629
[2025-07-16 03:07:25] 2025-07-16 07:06:50,857 | INFO     | -- intersect: -3979364972.518649
[2025-07-16 03:07:25] 2025-07-16 07:06:50,857 | INFO     | intersect: -3979364972.518649
[2025-07-16 03:07:25] 2025-07-16 07:06:50,857 | INFO     | chi2: 2.584482532346763
[2025-07-16 03:07:25] 2025-07-16 07:06:50,858 | INFO     | sum of square deviations: 59564011579.659966
[2025-07-16 03:07:25] 2025-07-16 07:06:50,867 | INFO     | sum of deviations: 141745948648.74527
[2025-07-16 03:07:25] 2025-07-16 07:06:50,867 | INFO     | mean x: 1752631645.0242634
[2025-07-16 03:07:25] 2025-07-16 07:06:50,867 | INFO     | mean y: 2268197.5181975737
[2025-07-16 03:07:25] 2025-07-16 07:06:50,867 | INFO     | -- intersect: -4168512590.5341806
[2025-07-16 03:07:25] 2025-07-16 07:06:50,868 | INFO     | intersect: -4168512590.5341806
[2025-07-16 03:07:25] 2025-07-16 07:06:50,868 | INFO     | chi2: 2.581285788581033
[2025-07-16 03:07:25] 2025-07-16 07:06:50,868 | INFO     | current chi2=2.581285788581033 (change=0.12368989636107779 %)
[2025-07-16 03:07:25] 2025-07-16 07:06:50,869 | INFO     | right removable region: 576
[2025-07-16 03:07:25] 2025-07-16 07:06:50,869 | INFO     | sum of square deviations: 59563720485.55629
[2025-07-16 03:07:25] 2025-07-16 07:06:50,878 | INFO     | sum of deviations: 18973083607.681107
[2025-07-16 03:07:25] 2025-07-16 07:06:50,878 | INFO     | mean x: 1752631950.0277297
[2025-07-16 03:07:25] 2025-07-16 07:06:50,878 | INFO     | mean y: 2279605.519930676
[2025-07-16 03:07:25] 2025-07-16 07:06:50,878 | INFO     | -- intersect: -555993656.2960908
[2025-07-16 03:07:25] 2025-07-16 07:06:50,878 | INFO     | intersect: -555993656.2960908
[2025-07-16 03:07:25] 2025-07-16 07:06:50,879 | INFO     | chi2: 0.5654301129662048
[2025-07-16 03:07:25] 2025-07-16 07:06:50,879 | INFO     | current chi2=0.5654301129662048 (change=78.12211512790597 %)
[2025-07-16 03:07:25] 2025-07-16 07:06:50,880 | INFO     | sum of square deviations: 58028420326.300705
[2025-07-16 03:07:25] 2025-07-16 07:06:50,888 | INFO     | sum of deviations: -4007284823.909097
[2025-07-16 03:07:25] 2025-07-16 07:06:50,888 | INFO     | mean x: 1752632102.534965
[2025-07-16 03:07:25] 2025-07-16 07:06:50,888 | INFO     | mean y: 2281881.0454545454
[2025-07-16 03:07:25] 2025-07-16 07:06:50,888 | INFO     | -- intersect: 123313885.48209836
[2025-07-16 03:07:25] 2025-07-16 07:06:50,888 | INFO     | intersect: 123313885.48209836
[2025-07-16 03:07:25] 2025-07-16 07:06:50,889 | INFO     | chi2: 0.4704652135104251
[2025-07-16 03:07:25] 2025-07-16 07:06:50,889 | INFO     | current chi2=0.4704652135104251 (change=16.795161290155004 %)
[2025-07-16 03:07:25] 2025-07-16 07:06:50,890 | INFO     | left removable region: 20
[2025-07-16 03:07:25] 2025-07-16 07:06:50,890 | INFO     | sum of square deviations: 53293562129.78419
[2025-07-16 03:07:25] 2025-07-16 07:06:50,898 | INFO     | sum of deviations: 477587759.61153734
[2025-07-16 03:07:25] 2025-07-16 07:06:50,898 | INFO     | mean x: 1752632224.5467627
[2025-07-16 03:07:25] 2025-07-16 07:06:50,898 | INFO     | mean y: 2282351.784172662
[2025-07-16 03:07:25] 2025-07-16 07:06:50,898 | INFO     | -- intersect: -13423779.76518532
[2025-07-16 03:07:25] 2025-07-16 07:06:50,903 | INFO     | intersect: -13423779.76518532
[2025-07-16 03:07:25] 2025-07-16 07:06:50,904 | INFO     | chi2: 0.4653717329238869
[2025-07-16 03:07:25] 2025-07-16 07:06:50,904 | INFO     | -- intersect: -13423779.76518532
[2025-07-16 03:07:25] 2025-07-16 07:06:50,904 | INFO     | current memory leak: 0.01 B/s (using 556 data points, chi2=0.47)
[2025-07-16 03:07:25] 2025-07-16 07:06:50,905 | INFO     | could have reported an average CPU frequency of 2600 MHz (23 samples)
[2025-07-16 03:07:25] 2025-07-16 07:06:50,905 | INFO     | ..............................
[2025-07-16 03:07:25] 2025-07-16 07:06:50,905 | INFO     | . Timing measurements:
[2025-07-16 03:07:25] 2025-07-16 07:06:50,905 | INFO     | . get job = 0 s
[2025-07-16 03:07:25] 2025-07-16 07:06:50,905 | INFO     | . initial setup = 5 s
[2025-07-16 03:07:25] 2025-07-16 07:06:50,905 | INFO     | . payload setup = 23 s
[2025-07-16 03:07:25] 2025-07-16 07:06:50,905 | INFO     | . stage-in = 0 s
[2025-07-16 03:07:25] 2025-07-16 07:06:50,905 | INFO     | . payload execution = 35518 s
[2025-07-16 03:07:25] 2025-07-16 07:06:50,906 | INFO     | . stage-out = 4 s
[2025-07-16 03:07:25] 2025-07-16 07:06:50,906 | INFO     | . log creation = 0 s
[2025-07-16 03:07:25] 2025-07-16 07:06:50,906 | INFO     | ..............................
[2025-07-16 03:07:25] 2025-07-16 07:06:51,165 | INFO     | 
[2025-07-16 03:07:25] 2025-07-16 07:06:51,165 | INFO     | job summary report
[2025-07-16 03:07:25] 2025-07-16 07:06:51,165 | INFO     | --------------------------------------------------
[2025-07-16 03:07:25] 2025-07-16 07:06:51,165 | INFO     | PanDA job id: 6720780931
[2025-07-16 03:07:25] 2025-07-16 07:06:51,165 | INFO     | task id: 45482062
[2025-07-16 03:07:25] 2025-07-16 07:06:51,166 | INFO     | errors: (none)
[2025-07-16 03:07:25] 2025-07-16 07:06:51,166 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-16 03:07:25] 2025-07-16 07:06:51,166 | INFO     | pilot state: finished 
[2025-07-16 03:07:25] 2025-07-16 07:06:51,166 | INFO     | transexitcode: 0
[2025-07-16 03:07:25] 2025-07-16 07:06:51,166 | INFO     | exeerrorcode: 0
[2025-07-16 03:07:25] 2025-07-16 07:06:51,166 | INFO     | exeerrordiag: 
[2025-07-16 03:07:25] 2025-07-16 07:06:51,166 | INFO     | exitcode: 0
[2025-07-16 03:07:25] 2025-07-16 07:06:51,166 | INFO     | exitmsg: OK
[2025-07-16 03:07:25] 2025-07-16 07:06:51,166 | INFO     | cpuconsumptiontime: 66670 s
[2025-07-16 03:07:25] 2025-07-16 07:06:51,166 | INFO     | nevents: 400
[2025-07-16 03:07:25] 2025-07-16 07:06:51,166 | INFO     | neventsw: 0
[2025-07-16 03:07:25] 2025-07-16 07:06:51,166 | INFO     | pid: 874049
[2025-07-16 03:07:25] 2025-07-16 07:06:51,167 | INFO     | pgrp: 874049
[2025-07-16 03:07:25] 2025-07-16 07:06:51,167 | INFO     | corecount: 10
[2025-07-16 03:07:25] 2025-07-16 07:06:51,167 | INFO     | event service: False
[2025-07-16 03:07:25] 2025-07-16 07:06:51,167 | INFO     | sizes: {0: 2403171, 1: 2403171, 12: 2403199, 16: 2403489, 23: 2403517, 35546: 2443717, 35551: 2452743, 35553: 2452799, 35576: 2452993}
[2025-07-16 03:07:25] 2025-07-16 07:06:51,167 | INFO     | --------------------------------------------------
[2025-07-16 03:07:25] 2025-07-16 07:06:51,167 | INFO     | 
[2025-07-16 03:07:25] 2025-07-16 07:06:51,167 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-16 03:07:25] 2025-07-16 07:06:51,215 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-16 03:07:25] 2025-07-16 07:06:51,215 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-16 03:07:25] 2025-07-16 07:06:51,215 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-16 03:07:25] 2025-07-16 07:06:51,216 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-16 03:07:25] 2025-07-16 07:06:51,216 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-16 03:07:25] 2025-07-16 07:06:51,216 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-16 03:07:25] 2025-07-16 07:06:51,216 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-16 03:07:25] 2025-07-16 07:06:51,216 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-16 03:07:25] 2025-07-16 07:06:51,216 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-16 03:07:25] 2025-07-16 07:06:51,216 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-16 03:07:25] 2025-07-16 07:06:51,216 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-16 03:07:25] 2025-07-16 07:06:51,217 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-16 03:07:25] 2025-07-16 07:06:51,217 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-16 03:07:25] 2025-07-16 07:06:51,217 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-16 03:07:25] 2025-07-16 07:06:51,217 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-16 03:07:25] 2025-07-16 07:06:51,217 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-16 03:07:25] 2025-07-16 07:06:51,217 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-16 03:07:25] 2025-07-16 07:06:51,217 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-16 03:07:25] 2025-07-16 07:06:51,218 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-16 03:07:25] 2025-07-16 07:06:51,218 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-16 03:07:25] 2025-07-16 07:06:51,218 | INFO     | job 6720780931 has completed (purged errors)
[2025-07-16 03:07:25] 2025-07-16 07:06:51,218 | INFO     | overall cleanup function is called
[2025-07-16 03:07:25] 2025-07-16 07:06:52,228 | INFO     | --- collectZombieJob: --- 10, [874049]
[2025-07-16 03:07:25] 2025-07-16 07:06:52,229 | INFO     | zombie collector waiting for pid 874049
[2025-07-16 03:07:25] 2025-07-16 07:06:52,229 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-16 03:07:25] 2025-07-16 07:06:52,229 | INFO     | collected zombie processes
[2025-07-16 03:07:25] 2025-07-16 07:06:52,229 | INFO     | will attempt to kill all subprocesses of pid=874049
[2025-07-16 03:07:25] 2025-07-16 07:06:52,903 | INFO     | process IDs to be killed: [874049] (in reverse order)
[2025-07-16 03:07:25] 2025-07-16 07:06:53,314 | WARNING  | found no corresponding commands to process id(s)
[2025-07-16 03:07:25] 2025-07-16 07:06:53,315 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-16 03:07:25] 2025-07-16 07:06:53,332 | INFO     | did not find any defunct processes belonging to 874049
[2025-07-16 03:07:25] 2025-07-16 07:06:53,350 | INFO     | did not find any defunct processes belonging to 874049
[2025-07-16 03:07:25] 2025-07-16 07:06:53,351 | INFO     | ready for new job
[2025-07-16 03:07:25] 2025-07-16 07:06:53,351 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-16 03:07:25] 2025-07-16 07:06:53,357 | INFO     | ***************************************
[2025-07-16 03:07:25] 2025-07-16 07:06:53,357 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-16 03:07:25] 2025-07-16 07:06:53,357 | INFO     | ***************************************
[2025-07-16 03:07:25] 2025-07-16 07:06:53,357 | INFO     | 
[2025-07-16 03:07:25] 2025-07-16 07:06:53,374 | INFO     | architecture information:
[2025-07-16 03:07:25] 2025-07-16 07:06:53,381 | INFO     | executing command: cat /etc/os-release
[2025-07-16 03:07:25] 2025-07-16 07:06:53,415 | INFO     | cat /etc/os-release:
[2025-07-16 03:07:25] NAME="CentOS Linux"
[2025-07-16 03:07:25] VERSION="7 (Core)"
[2025-07-16 03:07:25] ID="centos"
[2025-07-16 03:07:25] ID_LIKE="rhel fedora"
[2025-07-16 03:07:25] VERSION_ID="7"
[2025-07-16 03:07:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-16 03:07:25] ANSI_COLOR="0;31"
[2025-07-16 03:07:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-16 03:07:25] HOME_URL="https://www.centos.org/"
[2025-07-16 03:07:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-16 03:07:25] 
[2025-07-16 03:07:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-16 03:07:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-16 03:07:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-16 03:07:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-16 03:07:25] 
[2025-07-16 03:07:25] 2025-07-16 07:06:53,415 | INFO     | ***************************************
[2025-07-16 03:07:25] 2025-07-16 07:06:53,919 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-16 03:07:25] 2025-07-16 07:06:54,032 | INFO     | sufficient remaining disk space (76298584064 B)
[2025-07-16 03:07:25] 2025-07-16 07:06:54,032 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-16 03:07:25] 2025-07-16 07:06:54,033 | INFO     | current server update state: UPDATING_FINAL
[2025-07-16 03:07:25] 2025-07-16 07:06:54,033 | INFO     | update_server=False
[2025-07-16 03:07:25] 2025-07-16 07:06:54,033 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-16 03:07:25] 2025-07-16 07:06:54,047 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-16 03:07:25] 2025-07-16 07:06:54,047 | INFO     | aborting loop
[2025-07-16 03:07:25] 2025-07-16 07:06:54,100 | INFO     | all payload control threads have been joined
[2025-07-16 03:07:25] 2025-07-16 07:06:54,169 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-16 03:07:25] 2025-07-16 07:06:54,497 | INFO     | all data control threads have been joined
[2025-07-16 03:07:25] 2025-07-16 07:06:54,992 | INFO     | all job control threads have been joined
[2025-07-16 03:07:25] 2025-07-16 07:06:55,039 | INFO     | [job] retrieve thread has finished
[2025-07-16 03:07:25] 2025-07-16 07:06:55,053 | INFO     | [job] job monitor thread has finished
[2025-07-16 03:07:25] 2025-07-16 07:06:55,088 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-16 03:07:25] 2025-07-16 07:06:55,106 | INFO     | [payload] control thread has finished
[2025-07-16 03:07:25] 2025-07-16 07:06:55,233 | INFO     | [job] validate thread has finished
[2025-07-16 03:07:25] 2025-07-16 07:06:55,236 | INFO     | [job] create_data_payload thread has finished
[2025-07-16 03:07:25] 2025-07-16 07:06:55,317 | INFO     | [data] copytool_in thread has finished
[2025-07-16 03:07:25] 2025-07-16 07:06:55,440 | INFO     | [payload] execute_payloads thread has finished
[2025-07-16 03:07:25] 2025-07-16 07:06:55,503 | INFO     | [data] control thread has finished
[2025-07-16 03:07:25] 2025-07-16 07:06:55,665 | INFO     | [payload] validate_pre thread has finished
[2025-07-16 03:07:25] 2025-07-16 07:06:55,999 | INFO     | [job] control thread has finished
[2025-07-16 03:07:25] 2025-07-16 07:06:56,176 | INFO     | [data] copytool_out thread has finished
[2025-07-16 03:07:25] 2025-07-16 07:06:56,193 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-16 03:07:25] 2025-07-16 07:06:56,291 | INFO     | [payload] validate_post thread has finished
[2025-07-16 03:07:25] 2025-07-16 07:06:56,409 | INFO     | [payload] failed_post thread has finished
[2025-07-16 03:07:25] 2025-07-16 07:06:56,843 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-16 03:07:25] 2025-07-16 07:06:57,204 | INFO     | [job] queue monitor thread has finished
[2025-07-16 03:07:25] 2025-07-16 07:07:00,855 | INFO     | [data] queue_monitor thread has finished
[2025-07-16 03:07:25] 2025-07-16 07:07:01,507 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139691469576000)>', '<ExcThread(monitor, started 139690816546560)>']
[2025-07-16 03:07:25] 2025-07-16 07:07:06,533 | INFO     | all workflow threads have been joined
[2025-07-16 03:07:25] 2025-07-16 07:07:06,533 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-16 03:07:25] 2025-07-16 07:07:06,533 | INFO     | traces error code: 0
[2025-07-16 03:07:25] 2025-07-16 07:07:06,534 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-16 03:07:25] 2025-07-16 07:07:23,156 | INFO     | PID=848831 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-16 03:07:25] 2025-07-16 07:07:23,157 | INFO     | .. there are 41 such processes running
[2025-07-16 03:07:25] 2025-07-16 07:07:23,157 | INFO     | found 0 job(s) in 20 queues
[2025-07-16 03:07:25] 2025-07-16 07:07:23,157 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-16 03:07:25] 2025-07-16 07:07:23,157 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-16 03:07:25] 2025-07-16 07:07:23,157 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-16 03:07:25] 2025-07-16 07:07:23,157 | INFO     | [monitor] control thread has ended
[2025-07-16 03:07:25] 2025-07-16 07:07:23,298 [wrapper] ==== pilot stdout END ====
[2025-07-16 03:07:25] 2025-07-16 07:07:23,319 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-16 03:07:25] 2025-07-16 07:07:23,344 [wrapper] pilotpid: 848831
[2025-07-16 03:07:25] 2025-07-16 07:07:23,359 [wrapper] Pilot exit status: 0
[2025-07-16 03:07:25] 2025-07-16 07:07:23,501 [wrapper] pandaids: 6720780931
[2025-07-16 03:07:25] 2025-07-16 07:07:24,035 [wrapper] cleanup supervisor_pilot 2433278 848832
[2025-07-16 03:07:25] 2025-07-16 07:07:24,073 [wrapper] Test setup, not cleaning
[2025-07-16 03:07:25] 2025-07-16 07:07:24,113 [wrapper] apfmon messages muted
[2025-07-16 03:07:25] 2025-07-16 07:07:24,163 [wrapper] ==== wrapper stdout END ====
[2025-07-16 03:07:25] 2025-07-16 07:07:24,200 [wrapper] ==== wrapper stderr END ====
[2025-07-16 03:07:25]  *** Error codes and diagnostics ***
[2025-07-16 03:07:25]     "exeErrorCode": 0,
[2025-07-16 03:07:25]     "exeErrorDiag": "",
[2025-07-16 03:07:25]     "pilotErrorCode": 0,
[2025-07-16 03:07:25]     "pilotErrorDiag": "",
[2025-07-16 03:07:25]  *** Listing of results directory ***
[2025-07-16 03:07:25] total 578264
[2025-07-16 03:07:25] -rw-r--r--. 1 boincer umatlas      5112 Jul 15 17:11 queuedata.json
[2025-07-16 03:07:25] -rw-r--r--. 1 boincer umatlas    530466 Jul 15 17:11 pilot3.tar.gz
[2025-07-16 03:07:25] -rwx------. 1 boincer umatlas     36292 Jul 15 17:11 runpilot2-wrapper.sh
[2025-07-16 03:07:25] -rw-r--r--. 1 boincer umatlas       100 Jul 15 17:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-16 03:07:25] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 15 17:12 run_atlas
[2025-07-16 03:07:25] -rw-r--r--. 1 boincer umatlas       105 Jul 15 17:12 job.xml
[2025-07-16 03:07:25] -rw-r--r--. 2 boincer umatlas 318909110 Jul 15 17:12 EVNT.45482060._000392.pool.root.1
[2025-07-16 03:07:25] -rw-r--r--. 2 boincer umatlas     15095 Jul 15 17:12 start_atlas.sh
[2025-07-16 03:07:25] drwxrwx--x. 2 boincer umatlas      4096 Jul 15 17:12 shared
[2025-07-16 03:07:25] -rw-r--r--. 2 boincer umatlas    542887 Jul 15 17:12 input.tar.gz
[2025-07-16 03:07:25] -rw-r--r--. 1 boincer umatlas         0 Jul 15 17:12 boinc_lockfile
[2025-07-16 03:07:25] -rw-r--r--. 1 boincer umatlas      2532 Jul 15 17:12 pandaJob.out
[2025-07-16 03:07:25] -rw-------. 1 boincer umatlas    977875 Jul 15 17:13 agis_schedconf.cvmfs.json
[2025-07-16 03:07:25] drwx------. 4 boincer umatlas      4096 Jul 15 17:13 pilot3
[2025-07-16 03:07:25] -rw-r--r--. 1 boincer umatlas      6655 Jul 16 03:04 init_data.xml
[2025-07-16 03:07:25] -rw-------. 1 boincer umatlas 263017726 Jul 16 03:05 HITS.45482062._009792.pool.root.1
[2025-07-16 03:07:25] -rw-r--r--. 1 boincer umatlas       531 Jul 16 03:05 boinc_task_state.xml
[2025-07-16 03:07:25] -rw-------. 1 boincer umatlas      1048 Jul 16 03:06 memory_monitor_summary.json
[2025-07-16 03:07:25] -rw-------. 1 boincer umatlas   1595998 Jul 16 03:06 agis_ddmendpoints.agis.ALL.json
[2025-07-16 03:07:25] -rw-------. 1 boincer umatlas    594459 Jul 16 03:06 log.45482062._009792.job.log.tgz.1
[2025-07-16 03:07:25] -rw-------. 1 boincer umatlas        95 Jul 16 03:06 pilot_heartbeat.json
[2025-07-16 03:07:25] -rw-------. 1 boincer umatlas      7824 Jul 16 03:06 heartbeat.json
[2025-07-16 03:07:25] -rw-r--r--. 1 boincer umatlas        28 Jul 16 03:07 wrapper_checkpoint.txt
[2025-07-16 03:07:25] -rw-------. 1 boincer umatlas       822 Jul 16 03:07 pilotlog.txt
[2025-07-16 03:07:25] -rw-------. 1 boincer umatlas   2575212 Jul 16 03:07 log.45482062._009792.job.log.1
[2025-07-16 03:07:25] -rw-------. 1 boincer umatlas       357 Jul 16 03:07 output.list
[2025-07-16 03:07:25] -rw-r--r--. 1 boincer umatlas       620 Jul 16 03:07 runtime_log
[2025-07-16 03:07:25] -rw-------. 1 boincer umatlas   3184640 Jul 16 03:07 result.tar.gz
[2025-07-16 03:07:25] -rw-r--r--. 1 boincer umatlas      8192 Jul 16 03:07 boinc_mmap_file
[2025-07-16 03:07:25] -rw-r--r--. 1 boincer umatlas      8648 Jul 16 03:07 runtime_log.err
[2025-07-16 03:07:25] -rw-------. 1 boincer umatlas       657 Jul 16 03:07 DmGKDmX71v7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm4UFLDmTN8XPn.diag
[2025-07-16 03:07:25] -rw-r--r--. 1 boincer umatlas     21019 Jul 16 03:07 stderr.txt
[2025-07-16 03:07:25] HITS file was successfully produced:
[2025-07-16 03:07:25] -rw-------. 1 boincer umatlas 263017726 Jul 16 03:05 shared/HITS.pool.root.1
[2025-07-16 03:07:25]  *** Contents of shared directory: ***
[2025-07-16 03:07:25] total 571960
[2025-07-16 03:07:25] -rw-r--r--. 2 boincer umatlas 318909110 Jul 15 17:12 ATLAS.root_0
[2025-07-16 03:07:25] -rw-r--r--. 2 boincer umatlas     15095 Jul 15 17:12 start_atlas.sh
[2025-07-16 03:07:25] -rw-r--r--. 2 boincer umatlas    542887 Jul 15 17:12 input.tar.gz
[2025-07-16 03:07:25] -rw-------. 1 boincer umatlas 263017726 Jul 16 03:05 HITS.pool.root.1
[2025-07-16 03:07:25] -rw-------. 1 boincer umatlas   3184640 Jul 16 03:07 result.tar.gz
03:07:46 (841761): run_atlas exited; CPU time 68146.136963
03:07:46 (841761): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN