Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:37:03 (3884302): wrapper (7.7.26015): starting
10:37:03 (3884302): wrapper: running run_atlas (--nthreads 8)
[2025-07-14 10:37:03] Arguments: --nthreads 8
[2025-07-14 10:37:03] Threads: 8
[2025-07-14 10:37:03] Checking for CVMFS
[2025-07-14 10:37:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-14 10:37:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-14 10:37:03] Running cvmfs_config stat atlas.cern.ch
[2025-07-14 10:37:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-14 10:37:03] 2.13.0.0 3211263 131 34204 148317 0 1 37447502 40960001 0 16776704 0 47 97.959 1311 192 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-14 10:37:03] CVMFS is ok
[2025-07-14 10:37:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-14 10:37:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-14 10:37:03] Further information can be found at the LHC@home message board.
[2025-07-14 10:37:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-14 10:37:03] Checking for apptainer binary...
[2025-07-14 10:37:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-14 10:37:03] Running /usr/bin/apptainer --version
[2025-07-14 10:37:03] apptainer version 1.4.1-1.el9
[2025-07-14 10:37:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-14 10:37:03] c6-5-37-3.aglt2.org
[2025-07-14 10:37:03] apptainer works
[2025-07-14 10:37:03] Set ATHENA_PROC_NUMBER=8
[2025-07-14 10:37:03] Set ATHENA_CORE_NUMBER=8
[2025-07-14 10:37:03] Starting ATLAS job with PandaID=6720617819
[2025-07-14 10:37:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-14 11:42:25]  *** The last 200 lines of the pilot log: ***
[2025-07-14 11:42:25]  mtime=0
[2025-07-14 11:42:25]  protocol_id=None
[2025-07-14 11:42:25]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-14 11:42:25]  replicas=None
[2025-07-14 11:42:25]  scope=mc23_13p6TeV
[2025-07-14 11:42:25]  status=None
[2025-07-14 11:42:25]  status_code=0
[2025-07-14 11:42:25]  storage_token=
[2025-07-14 11:42:25]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6720617819/log.45482040._005208.job.log.tgz.1
[2025-07-14 11:42:25]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cc/81/log.45482040._005208.job.log.tgz.1
[2025-07-14 11:42:25]  workdir=None
[2025-07-14 11:42:25] ]
[2025-07-14 11:42:25] 2025-07-14 15:41:46,407 | INFO     | transferring file log.45482040._005208.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6720617819/log.45482040._005208.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-14 11:42:25] 2025-07-14 15:41:46,407 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6720617819/log.45482040._005208.job.log.tgz.1 /tmp/boinchome/slots/3/log.45482040._005208.job
[2025-07-14 11:42:25] 2025-07-14 15:41:46,418 | INFO     | adding to output.list: log.45482040._005208.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cc/81/log.45482040._005208.job.log.tg
[2025-07-14 11:42:25] 2025-07-14 15:41:46,419 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-14 11:42:25] 2025-07-14 15:41:46,419 | INFO     | summary of transferred files:
[2025-07-14 11:42:25] 2025-07-14 15:41:46,419 | INFO     |  -- lfn=log.45482040._005208.job.log.tgz.1, status_code=0, status=transferred
[2025-07-14 11:42:25] 2025-07-14 15:41:46,419 | INFO     | stage-out finished correctly
[2025-07-14 11:42:25] 2025-07-14 15:41:47,584 | INFO     | monitor loop #297: job 0:6720617819 is in state 'finished'
[2025-07-14 11:42:25] 2025-07-14 15:41:47,584 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-14 11:42:25] 2025-07-14 15:41:48,079 | INFO     | 3879s have passed since pilot start - server update state is 'RUNNING'
[2025-07-14 11:42:25] 2025-07-14 15:41:49,849 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-14 11:42:25] 2025-07-14 15:41:49,892 | INFO     | job 6720617819 has state=finished
[2025-07-14 11:42:25] 2025-07-14 15:41:49,892 | INFO     | preparing for final server update for job 6720617819 in state='finished'
[2025-07-14 11:42:25] 2025-07-14 15:41:49,893 | INFO     | this job has now completed (state=finished)
[2025-07-14 11:42:25] 2025-07-14 15:41:49,893 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-14 11:42:25] 2025-07-14 15:41:49,893 | INFO     | log transfer has been attempted: DONE
[2025-07-14 11:42:25] 2025-07-14 15:41:49,893 | INFO     | job 6720617819 has finished - writing final server update
[2025-07-14 11:42:25] 2025-07-14 15:41:49,894 | INFO     | total number of processed events: 400 (read)
[2025-07-14 11:42:25] 2025-07-14 15:41:49,894 | INFO     | executing command: lscpu
[2025-07-14 11:42:25] 2025-07-14 15:41:49,937 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-14 11:42:25] 2025-07-14 15:41:50,087 | INFO     | monitor loop #298: job 0:6720617819 is in state 'finished'
[2025-07-14 11:42:25] 2025-07-14 15:41:50,087 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-14 11:42:25] 2025-07-14 15:41:52,376 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-14 11:42:25] 2025-07-14 15:41:52,393 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3621.4281249999995
[2025-07-14 11:42:25] 2025-07-14 15:41:52,410 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6720617819/memory_monitor_summary.json (trf name=prmon)
[2025-07-14 11:42:25] 2025-07-14 15:41:52,410 | INFO     | extracted standard info from prmon json
[2025-07-14 11:42:25] 2025-07-14 15:41:52,410 | INFO     | extracted standard memory fields from prmon json
[2025-07-14 11:42:25] 2025-07-14 15:41:52,410 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-14 11:42:25] 2025-07-14 15:41:52,411 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-14 11:42:25] 2025-07-14 15:41:52,411 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-14 11:42:25] 2025-07-14 15:41:52,411 | INFO     | fitting pss+swap vs Time
[2025-07-14 11:42:25] 2025-07-14 15:41:52,412 | INFO     | sum of square deviations: 57407588.0
[2025-07-14 11:42:25] 2025-07-14 15:41:52,412 | INFO     | sum of deviations: -9951410680.0
[2025-07-14 11:42:25] 2025-07-14 15:41:52,412 | INFO     | mean x: 1752505864.0
[2025-07-14 11:42:25] 2025-07-14 15:41:52,412 | INFO     | mean y: 2530406.01754386
[2025-07-14 11:42:25] 2025-07-14 15:41:52,412 | INFO     | -- intersect: 303793478246.78424
[2025-07-14 11:42:25] 2025-07-14 15:41:52,412 | INFO     | intersect: 303793478246.78424
[2025-07-14 11:42:25] 2025-07-14 15:41:52,412 | INFO     | chi2: 0.13819516252239802
[2025-07-14 11:42:25] 2025-07-14 15:41:52,412 | INFO     | -- intersect: 303793478246.78424
[2025-07-14 11:42:25] 2025-07-14 15:41:52,412 | INFO     | current memory leak: -173.35 B/s (using 57 data points, chi2=0.14)
[2025-07-14 11:42:25] 2025-07-14 15:41:52,412 | INFO     | could have reported an average CPU frequency of 3609 MHz (6 samples)
[2025-07-14 11:42:25] 2025-07-14 15:41:52,412 | INFO     | ..............................
[2025-07-14 11:42:25] 2025-07-14 15:41:52,412 | INFO     | . Timing measurements:
[2025-07-14 11:42:25] 2025-07-14 15:41:52,413 | INFO     | . get job = 0 s
[2025-07-14 11:42:25] 2025-07-14 15:41:52,413 | INFO     | . initial setup = 2 s
[2025-07-14 11:42:25] 2025-07-14 15:41:52,413 | INFO     | . payload setup = 4 s
[2025-07-14 11:42:25] 2025-07-14 15:41:52,413 | INFO     | . stage-in = 0 s
[2025-07-14 11:42:25] 2025-07-14 15:41:52,413 | INFO     | . payload execution = 3853 s
[2025-07-14 11:42:25] 2025-07-14 15:41:52,413 | INFO     | . stage-out = 0 s
[2025-07-14 11:42:25] 2025-07-14 15:41:52,413 | INFO     | . log creation = 0 s
[2025-07-14 11:42:25] 2025-07-14 15:41:52,413 | INFO     | ..............................
[2025-07-14 11:42:25] 2025-07-14 15:41:52,897 | INFO     | 
[2025-07-14 11:42:25] 2025-07-14 15:41:52,898 | INFO     | job summary report
[2025-07-14 11:42:25] 2025-07-14 15:41:52,898 | INFO     | --------------------------------------------------
[2025-07-14 11:42:25] 2025-07-14 15:41:52,898 | INFO     | PanDA job id: 6720617819
[2025-07-14 11:42:25] 2025-07-14 15:41:52,898 | INFO     | task id: 45482040
[2025-07-14 11:42:25] 2025-07-14 15:41:52,898 | INFO     | errors: (none)
[2025-07-14 11:42:25] 2025-07-14 15:41:52,898 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-14 11:42:25] 2025-07-14 15:41:52,898 | INFO     | pilot state: finished 
[2025-07-14 11:42:25] 2025-07-14 15:41:52,898 | INFO     | transexitcode: 0
[2025-07-14 11:42:25] 2025-07-14 15:41:52,898 | INFO     | exeerrorcode: 0
[2025-07-14 11:42:25] 2025-07-14 15:41:52,898 | INFO     | exeerrordiag: 
[2025-07-14 11:42:25] 2025-07-14 15:41:52,899 | INFO     | exitcode: 0
[2025-07-14 11:42:25] 2025-07-14 15:41:52,899 | INFO     | exitmsg: OK
[2025-07-14 11:42:25] 2025-07-14 15:41:52,899 | INFO     | cpuconsumptiontime: 29048 s
[2025-07-14 11:42:25] 2025-07-14 15:41:52,899 | INFO     | nevents: 400
[2025-07-14 11:42:25] 2025-07-14 15:41:52,899 | INFO     | neventsw: 0
[2025-07-14 11:42:25] 2025-07-14 15:41:52,899 | INFO     | pid: 3895969
[2025-07-14 11:42:25] 2025-07-14 15:41:52,899 | INFO     | pgrp: 3895969
[2025-07-14 11:42:25] 2025-07-14 15:41:52,899 | INFO     | corecount: 8
[2025-07-14 11:42:25] 2025-07-14 15:41:52,899 | INFO     | event service: False
[2025-07-14 11:42:25] 2025-07-14 15:41:52,899 | INFO     | sizes: {0: 2393376, 1: 2393490, 3: 2393780, 11: 2393808, 3861: 2419639, 3862: 2428637, 3866: 2428821, 3868: 2429015}
[2025-07-14 11:42:25] 2025-07-14 15:41:52,899 | INFO     | --------------------------------------------------
[2025-07-14 11:42:25] 2025-07-14 15:41:52,899 | INFO     | 
[2025-07-14 11:42:25] 2025-07-14 15:41:52,900 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-07-14 11:42:25] 2025-07-14 15:41:52,913 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-14 11:42:25] 2025-07-14 15:41:52,913 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-14 11:42:25] 2025-07-14 15:41:52,913 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-14 11:42:25] 2025-07-14 15:41:52,913 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-14 11:42:25] 2025-07-14 15:41:52,913 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-14 11:42:25] 2025-07-14 15:41:52,913 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-14 11:42:25] 2025-07-14 15:41:52,913 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-14 11:42:25] 2025-07-14 15:41:52,913 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-14 11:42:25] 2025-07-14 15:41:52,914 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-14 11:42:25] 2025-07-14 15:41:52,914 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-14 11:42:25] 2025-07-14 15:41:52,914 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-14 11:42:25] 2025-07-14 15:41:52,914 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-14 11:42:25] 2025-07-14 15:41:52,914 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-14 11:42:25] 2025-07-14 15:41:52,914 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-14 11:42:25] 2025-07-14 15:41:52,914 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-14 11:42:25] 2025-07-14 15:41:52,914 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-14 11:42:25] 2025-07-14 15:41:52,914 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-14 11:42:25] 2025-07-14 15:41:52,914 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-14 11:42:25] 2025-07-14 15:41:52,914 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-14 11:42:25] 2025-07-14 15:41:52,914 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-14 11:42:25] 2025-07-14 15:41:52,914 | INFO     | job 6720617819 has completed (purged errors)
[2025-07-14 11:42:25] 2025-07-14 15:41:52,914 | INFO     | overall cleanup function is called
[2025-07-14 11:42:25] 2025-07-14 15:41:53,916 | INFO     | --- collectZombieJob: --- 10, [3895969]
[2025-07-14 11:42:25] 2025-07-14 15:41:53,916 | INFO     | zombie collector waiting for pid 3895969
[2025-07-14 11:42:25] 2025-07-14 15:41:53,916 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-14 11:42:25] 2025-07-14 15:41:53,917 | INFO     | collected zombie processes
[2025-07-14 11:42:25] 2025-07-14 15:41:53,917 | INFO     | will attempt to kill all subprocesses of pid=3895969
[2025-07-14 11:42:25] 2025-07-14 15:41:54,037 | INFO     | process IDs to be killed: [3895969] (in reverse order)
[2025-07-14 11:42:25] 2025-07-14 15:41:54,082 | WARNING  | found no corresponding commands to process id(s)
[2025-07-14 11:42:25] 2025-07-14 15:41:54,082 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-14 11:42:25] 2025-07-14 15:41:54,087 | INFO     | did not find any defunct processes belonging to 3895969
[2025-07-14 11:42:25] 2025-07-14 15:41:54,091 | INFO     | did not find any defunct processes belonging to 3895969
[2025-07-14 11:42:25] 2025-07-14 15:41:54,091 | INFO     | ready for new job
[2025-07-14 11:42:25] 2025-07-14 15:41:54,091 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-14 11:42:25] 2025-07-14 15:41:54,092 | INFO     | ***************************************
[2025-07-14 11:42:25] 2025-07-14 15:41:54,092 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-14 11:42:25] 2025-07-14 15:41:54,093 | INFO     | ***************************************
[2025-07-14 11:42:25] 2025-07-14 15:41:54,093 | INFO     | 
[2025-07-14 11:42:25] 2025-07-14 15:41:54,106 | INFO     | architecture information:
[2025-07-14 11:42:25] 2025-07-14 15:41:54,107 | INFO     | executing command: cat /etc/os-release
[2025-07-14 11:42:25] 2025-07-14 15:41:54,115 | INFO     | cat /etc/os-release:
[2025-07-14 11:42:25] NAME="CentOS Linux"
[2025-07-14 11:42:25] VERSION="7 (Core)"
[2025-07-14 11:42:25] ID="centos"
[2025-07-14 11:42:25] ID_LIKE="rhel fedora"
[2025-07-14 11:42:25] VERSION_ID="7"
[2025-07-14 11:42:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-14 11:42:25] ANSI_COLOR="0;31"
[2025-07-14 11:42:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-14 11:42:25] HOME_URL="https://www.centos.org/"
[2025-07-14 11:42:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-14 11:42:25] 
[2025-07-14 11:42:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-14 11:42:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-14 11:42:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-14 11:42:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-14 11:42:25] 
[2025-07-14 11:42:25] 2025-07-14 15:41:54,115 | INFO     | ***************************************
[2025-07-14 11:42:25] 2025-07-14 15:41:54,616 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-07-14 11:42:25] 2025-07-14 15:41:54,625 | INFO     | sufficient remaining disk space (70060605440 B)
[2025-07-14 11:42:25] 2025-07-14 15:41:54,626 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-14 11:42:25] 2025-07-14 15:41:54,626 | INFO     | current server update state: UPDATING_FINAL
[2025-07-14 11:42:25] 2025-07-14 15:41:54,626 | INFO     | update_server=False
[2025-07-14 11:42:25] 2025-07-14 15:41:54,626 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-14 11:42:25] 2025-07-14 15:41:54,626 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-14 11:42:25] 2025-07-14 15:41:54,661 | INFO     | all data control threads have been joined
[2025-07-14 11:42:25] 2025-07-14 15:41:54,944 | INFO     | all payload control threads have been joined
[2025-07-14 11:42:25] 2025-07-14 15:41:55,091 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-14 11:42:25] 2025-07-14 15:41:55,091 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-14 11:42:25] 2025-07-14 15:41:55,091 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-14 11:42:25] 2025-07-14 15:41:55,091 | INFO     | will abort loop
[2025-07-14 11:42:25] 2025-07-14 15:41:55,406 | INFO     | all job control threads have been joined
[2025-07-14 11:42:25] 2025-07-14 15:41:55,631 | INFO     | [job] retrieve thread has finished
[2025-07-14 11:42:25] 2025-07-14 15:41:55,638 | INFO     | [payload] validate_pre thread has finished
[2025-07-14 11:42:25] 2025-07-14 15:41:55,664 | INFO     | [data] control thread has finished
[2025-07-14 11:42:25] 2025-07-14 15:41:55,774 | INFO     | [payload] validate_post thread has finished
[2025-07-14 11:42:25] 2025-07-14 15:41:55,898 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-14 11:42:25] 2025-07-14 15:41:55,949 | INFO     | [payload] control thread has finished
[2025-07-14 11:42:25] 2025-07-14 15:41:56,096 | INFO     | [job] job monitor thread has finished
[2025-07-14 11:42:25] 2025-07-14 15:41:56,411 | INFO     | [job] control thread has finished
[2025-07-14 11:42:25] 2025-07-14 15:41:56,548 | INFO     | [data] copytool_in thread has finished
[2025-07-14 11:42:25] 2025-07-14 15:41:56,548 | INFO     | [payload] execute_payloads thread has finished
[2025-07-14 11:42:25] 2025-07-14 15:41:56,631 | INFO     | [data] copytool_out thread has finished
[2025-07-14 11:42:25] 2025-07-14 15:41:56,806 | INFO     | [payload] failed_post thread has finished
[2025-07-14 11:42:25] 2025-07-14 15:41:57,020 | INFO     | [job] validate thread has finished
[2025-07-14 11:42:25] 2025-07-14 15:41:57,112 | INFO     | [job] create_data_payload thread has finished
[2025-07-14 11:42:25] 2025-07-14 15:41:57,469 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-14 11:42:25] 2025-07-14 15:41:58,472 | INFO     | [job] queue monitor thread has finished
[2025-07-14 11:42:25] 2025-07-14 15:41:59,903 | INFO     | [data] queue_monitor thread has finished
[2025-07-14 11:42:25] 2025-07-14 15:42:05,462 | INFO     | job.realtimelogging is not enabled
[2025-07-14 11:42:25] 2025-07-14 15:42:06,466 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-14 11:42:25] 2025-07-14 15:42:06,544 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140126624954176)>', '<ExcThread(monitor, started 140126353069824)>']
[2025-07-14 11:42:25] 2025-07-14 15:42:11,545 | INFO     | all workflow threads have been joined
[2025-07-14 11:42:25] 2025-07-14 15:42:11,545 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-14 11:42:25] 2025-07-14 15:42:11,545 | INFO     | traces error code: 0
[2025-07-14 11:42:25] 2025-07-14 15:42:11,545 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-14 11:42:25] 2025-07-14 15:42:25,305 | INFO     | PID=3888226 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-14 11:42:25] 2025-07-14 15:42:25,305 | INFO     | .. there are 4 such processes running
[2025-07-14 11:42:25] 2025-07-14 15:42:25,305 | INFO     | found 0 job(s) in 20 queues
[2025-07-14 11:42:25] 2025-07-14 15:42:25,305 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-14 11:42:25] 2025-07-14 15:42:25,306 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-14 11:42:25] 2025-07-14 15:42:25,306 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-14 11:42:25] 2025-07-14 15:42:25,306 | INFO     | [monitor] control thread has ended
[2025-07-14 11:42:25] 2025-07-14 15:42:25,387 [wrapper] ==== pilot stdout END ====
[2025-07-14 11:42:25] 2025-07-14 15:42:25,389 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-14 11:42:25] 2025-07-14 15:42:25,390 [wrapper] pilotpid: 3888226
[2025-07-14 11:42:25] 2025-07-14 15:42:25,392 [wrapper] Pilot exit status: 0
[2025-07-14 11:42:25] 2025-07-14 15:42:25,398 [wrapper] pandaids: 6720617819
[2025-07-14 11:42:25] 2025-07-14 15:42:25,428 [wrapper] cleanup supervisor_pilot 4168283 3888227
[2025-07-14 11:42:25] 2025-07-14 15:42:25,430 [wrapper] Test setup, not cleaning
[2025-07-14 11:42:25] 2025-07-14 15:42:25,432 [wrapper] apfmon messages muted
[2025-07-14 11:42:25] 2025-07-14 15:42:25,433 [wrapper] ==== wrapper stdout END ====
[2025-07-14 11:42:25] 2025-07-14 15:42:25,435 [wrapper] ==== wrapper stderr END ====
[2025-07-14 11:42:25]  *** Error codes and diagnostics ***
[2025-07-14 11:42:25]     "exeErrorCode": 0,
[2025-07-14 11:42:25]     "exeErrorDiag": "",
[2025-07-14 11:42:25]     "pilotErrorCode": 0,
[2025-07-14 11:42:25]     "pilotErrorDiag": "",
[2025-07-14 11:42:25]  *** Listing of results directory ***
[2025-07-14 11:42:25] total 560548
[2025-07-14 11:42:25] -rw-r--r--. 1 boincer umatlas    530466 Jul  5 04:55 pilot3.tar.gz
[2025-07-14 11:42:25] -rw-r--r--. 1 boincer umatlas      5112 Jul  5 05:08 queuedata.json
[2025-07-14 11:42:25] -rwx------. 1 boincer umatlas     36292 Jul  5 05:09 runpilot2-wrapper.sh
[2025-07-14 11:42:25] -rw-r--r--. 1 boincer umatlas       100 Jul 14 10:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-14 11:42:25] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 14 10:37 run_atlas
[2025-07-14 11:42:25] -rw-r--r--. 1 boincer umatlas       105 Jul 14 10:37 job.xml
[2025-07-14 11:42:25] -rw-r--r--. 2 boincer umatlas 312449245 Jul 14 10:37 EVNT.45482038._000209.pool.root.1
[2025-07-14 11:42:25] -rw-r--r--. 2 boincer umatlas     15095 Jul 14 10:37 start_atlas.sh
[2025-07-14 11:42:25] drwxrwx--x. 2 boincer umatlas      4096 Jul 14 10:37 shared
[2025-07-14 11:42:25] -rw-r--r--. 2 boincer umatlas    542889 Jul 14 10:37 input.tar.gz
[2025-07-14 11:42:25] -rw-r--r--. 1 boincer umatlas         0 Jul 14 10:37 boinc_lockfile
[2025-07-14 11:42:25] -rw-r--r--. 1 boincer umatlas      2543 Jul 14 10:37 pandaJob.out
[2025-07-14 11:42:25] -rw-------. 1 boincer umatlas    977070 Jul 14 10:37 agis_schedconf.cvmfs.json
[2025-07-14 11:42:25] -rw-------. 1 boincer umatlas   1588641 Jul 14 10:37 agis_ddmendpoints.agis.ALL.json
[2025-07-14 11:42:25] drwx------. 4 boincer umatlas      4096 Jul 14 10:37 pilot3
[2025-07-14 11:42:25] -rw-r--r--. 1 boincer umatlas      6841 Jul 14 11:40 init_data.xml
[2025-07-14 11:42:25] -rw-r--r--. 1 boincer umatlas       529 Jul 14 11:41 boinc_task_state.xml
[2025-07-14 11:42:25] -rw-------. 1 boincer umatlas 256307231 Jul 14 11:41 HITS.45482040._005208.pool.root.1
[2025-07-14 11:42:25] -rw-------. 1 boincer umatlas      1026 Jul 14 11:41 memory_monitor_summary.json
[2025-07-14 11:42:25] -rw-------. 1 boincer umatlas        95 Jul 14 11:41 pilot_heartbeat.json
[2025-07-14 11:42:25] -rw-------. 1 boincer umatlas    290119 Jul 14 11:41 log.45482040._005208.job.log.tgz.1
[2025-07-14 11:42:25] -rw-------. 1 boincer umatlas      7806 Jul 14 11:41 heartbeat.json
[2025-07-14 11:42:25] -rw-r--r--. 1 boincer umatlas        27 Jul 14 11:42 wrapper_checkpoint.txt
[2025-07-14 11:42:25] -rw-r--r--. 1 boincer umatlas      8192 Jul 14 11:42 boinc_mmap_file
[2025-07-14 11:42:25] -rw-------. 1 boincer umatlas       822 Jul 14 11:42 pilotlog.txt
[2025-07-14 11:42:25] -rw-------. 1 boincer umatlas    399957 Jul 14 11:42 log.45482040._005208.job.log.1
[2025-07-14 11:42:25] -rw-------. 1 boincer umatlas       357 Jul 14 11:42 output.list
[2025-07-14 11:42:25] -rw-r--r--. 1 boincer umatlas       620 Jul 14 11:42 runtime_log
[2025-07-14 11:42:25] -rw-------. 1 boincer umatlas    706560 Jul 14 11:42 result.tar.gz
[2025-07-14 11:42:25] -rw-r--r--. 1 boincer umatlas      8665 Jul 14 11:42 runtime_log.err
[2025-07-14 11:42:25] -rw-------. 1 boincer umatlas       651 Jul 14 11:42 2duMDmO5Ds7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmtNALDmlKOKWo.diag
[2025-07-14 11:42:25] -rw-r--r--. 1 boincer umatlas     21688 Jul 14 11:42 stderr.txt
[2025-07-14 11:42:25] HITS file was successfully produced:
[2025-07-14 11:42:25] -rw-------. 1 boincer umatlas 256307231 Jul 14 11:41 shared/HITS.pool.root.1
[2025-07-14 11:42:25]  *** Contents of shared directory: ***
[2025-07-14 11:42:25] total 556676
[2025-07-14 11:42:25] -rw-r--r--. 2 boincer umatlas 312449245 Jul 14 10:37 ATLAS.root_0
[2025-07-14 11:42:25] -rw-r--r--. 2 boincer umatlas     15095 Jul 14 10:37 start_atlas.sh
[2025-07-14 11:42:25] -rw-r--r--. 2 boincer umatlas    542889 Jul 14 10:37 input.tar.gz
[2025-07-14 11:42:25] -rw-------. 1 boincer umatlas 256307231 Jul 14 11:41 HITS.pool.root.1
[2025-07-14 11:42:25] -rw-------. 1 boincer umatlas    706560 Jul 14 11:42 result.tar.gz
11:42:26 (3884302): run_atlas exited; CPU time 29088.515023
11:42:26 (3884302): called boinc_finish(0)

</stderr_txt>
]]>

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