Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:45:12 (225925): wrapper (7.7.26015): starting
23:45:12 (225925): wrapper: running run_atlas (--nthreads 8)
[2025-07-13 23:45:12] Arguments: --nthreads 8
[2025-07-13 23:45:12] Threads: 8
[2025-07-13 23:45:12] Checking for CVMFS
[2025-07-13 23:45:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-13 23:45:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-13 23:45:13] Running cvmfs_config stat atlas.cern.ch
[2025-07-13 23:45:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-13 23:45:13] 2.11.2.0 6648 38292 217372 148302 2 1 15246538 18432001 1 130560 0 85366119 99.477 107360532 60542 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-13 23:45:13] CVMFS is ok
[2025-07-13 23:45:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-13 23:45:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-13 23:45:13] Further information can be found at the LHC@home message board.
[2025-07-13 23:45:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-13 23:45:13] Checking for apptainer binary...
[2025-07-13 23:45:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-13 23:45:13] Running /usr/bin/apptainer --version
[2025-07-13 23:45:14] apptainer version 1.3.2-1.el7
[2025-07-13 23:45:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-13 23:45:27] c-210-37-2.aglt2.org
[2025-07-13 23:45:27] apptainer works
[2025-07-13 23:45:27] Set ATHENA_PROC_NUMBER=8
[2025-07-13 23:45:27] Set ATHENA_CORE_NUMBER=8
[2025-07-13 23:45:27] Starting ATLAS job with PandaID=6720589275
[2025-07-13 23:45:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-14 00:59:01]  *** The last 200 lines of the pilot log: ***
[2025-07-14 00:59:01]  mtime=0
[2025-07-14 00:59:01]  protocol_id=None
[2025-07-14 00:59:01]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-14 00:59:01]  replicas=None
[2025-07-14 00:59:01]  scope=mc23_13p6TeV
[2025-07-14 00:59:01]  status=None
[2025-07-14 00:59:01]  status_code=0
[2025-07-14 00:59:01]  storage_token=
[2025-07-14 00:59:01]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6720589275/log.45482062._003687.job.log.tgz.1
[2025-07-14 00:59:01]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2b/f9/log.45482062._003687.job.log.tgz.1
[2025-07-14 00:59:01]  workdir=None
[2025-07-14 00:59:01] ]
[2025-07-14 00:59:01] 2025-07-14 04:58:18,723 | INFO     | transferring file log.45482062._003687.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6720589275/log.45482062._003687.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-14 00:59:01] 2025-07-14 04:58:18,723 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6720589275/log.45482062._003687.job.log.tgz.1 /tmp/boinchome/slots/0/log.45482062._003687.job
[2025-07-14 00:59:01] 2025-07-14 04:58:18,749 | INFO     | adding to output.list: log.45482062._003687.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2b/f9/log.45482062._003687.job.log.tg
[2025-07-14 00:59:01] 2025-07-14 04:58:18,750 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-14 00:59:01] 2025-07-14 04:58:18,750 | INFO     | summary of transferred files:
[2025-07-14 00:59:01] 2025-07-14 04:58:18,750 | INFO     |  -- lfn=log.45482062._003687.job.log.tgz.1, status_code=0, status=transferred
[2025-07-14 00:59:01] 2025-07-14 04:58:18,750 | INFO     | stage-out finished correctly
[2025-07-14 00:59:01] 2025-07-14 04:58:19,799 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-14 00:59:01] 2025-07-14 04:58:20,538 | INFO     | job 6720589275 has state=finished
[2025-07-14 00:59:01] 2025-07-14 04:58:20,538 | INFO     | preparing for final server update for job 6720589275 in state='finished'
[2025-07-14 00:59:01] 2025-07-14 04:58:20,539 | INFO     | this job has now completed (state=finished)
[2025-07-14 00:59:01] 2025-07-14 04:58:20,539 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-14 00:59:01] 2025-07-14 04:58:20,539 | INFO     | log transfer has been attempted: DONE
[2025-07-14 00:59:01] 2025-07-14 04:58:20,539 | INFO     | job 6720589275 has finished - writing final server update
[2025-07-14 00:59:01] 2025-07-14 04:58:20,540 | INFO     | total number of processed events: 400 (read)
[2025-07-14 00:59:01] 2025-07-14 04:58:20,542 | INFO     | executing command: lscpu
[2025-07-14 00:59:01] 2025-07-14 04:58:20,598 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-14 00:59:01] 2025-07-14 04:58:23,027 | INFO     | PID=229936 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-14 00:59:01] 2025-07-14 04:58:24,283 | WARNING  | process 236416 can no longer be monitored (due to stat problems) - aborting
[2025-07-14 00:59:01] 2025-07-14 04:58:24,283 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6720589275/memory_monitor_summary.json (trf name=prmon)
[2025-07-14 00:59:01] 2025-07-14 04:58:24,359 | INFO     | number of running child processes to parent process 236416: 1
[2025-07-14 00:59:01] 2025-07-14 04:58:24,359 | INFO     | maximum number of monitored processes: 6
[2025-07-14 00:59:01] 2025-07-14 04:58:26,860 | INFO     | monitor loop #338: job 0:6720589275 is in state 'finished'
[2025-07-14 00:59:01] 2025-07-14 04:58:26,860 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-14 00:59:01] 2025-07-14 04:58:29,006 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-14 00:59:01] 2025-07-14 04:58:29,013 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2600.0
[2025-07-14 00:59:01] 2025-07-14 04:58:29,023 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6720589275/memory_monitor_summary.json (trf name=prmon)
[2025-07-14 00:59:01] 2025-07-14 04:58:29,023 | INFO     | extracted standard info from prmon json
[2025-07-14 00:59:01] 2025-07-14 04:58:29,023 | INFO     | extracted standard memory fields from prmon json
[2025-07-14 00:59:01] 2025-07-14 04:58:29,024 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-14 00:59:01] 2025-07-14 04:58:29,024 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-14 00:59:01] 2025-07-14 04:58:29,024 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-14 00:59:01] 2025-07-14 04:58:29,025 | INFO     | fitting pss+swap vs Time
[2025-07-14 00:59:01] 2025-07-14 04:58:29,025 | INFO     | sum of square deviations: 81266640.0
[2025-07-14 00:59:01] 2025-07-14 04:58:29,025 | INFO     | sum of deviations: -5876328494.0
[2025-07-14 00:59:01] 2025-07-14 04:58:29,025 | INFO     | mean x: 1752467023.5
[2025-07-14 00:59:01] 2025-07-14 04:58:29,025 | INFO     | mean y: 2621561.875
[2025-07-14 00:59:01] 2025-07-14 04:58:29,025 | INFO     | -- intersect: 126722169767.4907
[2025-07-14 00:59:01] 2025-07-14 04:58:29,025 | INFO     | intersect: 126722169767.4907
[2025-07-14 00:59:01] 2025-07-14 04:58:29,025 | INFO     | chi2: 0.05891292612267586
[2025-07-14 00:59:01] 2025-07-14 04:58:29,025 | INFO     | -- intersect: 126722169767.4907
[2025-07-14 00:59:01] 2025-07-14 04:58:29,025 | INFO     | current memory leak: -72.31 B/s (using 64 data points, chi2=0.06)
[2025-07-14 00:59:01] 2025-07-14 04:58:29,025 | INFO     | could have reported an average CPU frequency of 2600 MHz (6 samples)
[2025-07-14 00:59:01] 2025-07-14 04:58:29,025 | INFO     | ..............................
[2025-07-14 00:59:01] 2025-07-14 04:58:29,025 | INFO     | . Timing measurements:
[2025-07-14 00:59:01] 2025-07-14 04:58:29,025 | INFO     | . get job = 0 s
[2025-07-14 00:59:01] 2025-07-14 04:58:29,025 | INFO     | . initial setup = 2 s
[2025-07-14 00:59:01] 2025-07-14 04:58:29,026 | INFO     | . payload setup = 22 s
[2025-07-14 00:59:01] 2025-07-14 04:58:29,026 | INFO     | . stage-in = 0 s
[2025-07-14 00:59:01] 2025-07-14 04:58:29,026 | INFO     | . payload execution = 4306 s
[2025-07-14 00:59:01] 2025-07-14 04:58:29,026 | INFO     | . stage-out = 0 s
[2025-07-14 00:59:01] 2025-07-14 04:58:29,026 | INFO     | . log creation = 0 s
[2025-07-14 00:59:01] 2025-07-14 04:58:29,026 | INFO     | ..............................
[2025-07-14 00:59:01] 2025-07-14 04:58:29,458 | INFO     | 
[2025-07-14 00:59:01] 2025-07-14 04:58:29,458 | INFO     | job summary report
[2025-07-14 00:59:01] 2025-07-14 04:58:29,459 | INFO     | --------------------------------------------------
[2025-07-14 00:59:01] 2025-07-14 04:58:29,459 | INFO     | PanDA job id: 6720589275
[2025-07-14 00:59:01] 2025-07-14 04:58:29,459 | INFO     | task id: 45482062
[2025-07-14 00:59:01] 2025-07-14 04:58:29,459 | INFO     | errors: (none)
[2025-07-14 00:59:01] 2025-07-14 04:58:29,459 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-14 00:59:01] 2025-07-14 04:58:29,459 | INFO     | pilot state: finished 
[2025-07-14 00:59:01] 2025-07-14 04:58:29,459 | INFO     | transexitcode: 0
[2025-07-14 00:59:01] 2025-07-14 04:58:29,459 | INFO     | exeerrorcode: 0
[2025-07-14 00:59:01] 2025-07-14 04:58:29,460 | INFO     | exeerrordiag: 
[2025-07-14 00:59:01] 2025-07-14 04:58:29,460 | INFO     | exitcode: 0
[2025-07-14 00:59:01] 2025-07-14 04:58:29,460 | INFO     | exitmsg: OK
[2025-07-14 00:59:01] 2025-07-14 04:58:29,460 | INFO     | cpuconsumptiontime: 31811 s
[2025-07-14 00:59:01] 2025-07-14 04:58:29,460 | INFO     | nevents: 400
[2025-07-14 00:59:01] 2025-07-14 04:58:29,460 | INFO     | neventsw: 0
[2025-07-14 00:59:01] 2025-07-14 04:58:29,460 | INFO     | pid: 236416
[2025-07-14 00:59:01] 2025-07-14 04:58:29,460 | INFO     | pgrp: 236416
[2025-07-14 00:59:01] 2025-07-14 04:58:29,461 | INFO     | corecount: 8
[2025-07-14 00:59:01] 2025-07-14 04:58:29,461 | INFO     | event service: False
[2025-07-14 00:59:01] 2025-07-14 04:58:29,461 | INFO     | sizes: {0: 2393262, 1: 2393517, 7: 2393779, 11: 2393807, 4329: 2419836, 4330: 2428834, 4331: 2429018, 4340: 2429212}
[2025-07-14 00:59:01] 2025-07-14 04:58:29,461 | INFO     | --------------------------------------------------
[2025-07-14 00:59:01] 2025-07-14 04:58:29,461 | INFO     | 
[2025-07-14 00:59:01] 2025-07-14 04:58:29,461 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-14 00:59:01] 2025-07-14 04:58:29,493 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-14 00:59:01] 2025-07-14 04:58:29,494 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-14 00:59:01] 2025-07-14 04:58:29,494 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-14 00:59:01] 2025-07-14 04:58:29,494 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-14 00:59:01] 2025-07-14 04:58:29,494 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-14 00:59:01] 2025-07-14 04:58:29,495 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-14 00:59:01] 2025-07-14 04:58:29,495 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-14 00:59:01] 2025-07-14 04:58:29,495 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-14 00:59:01] 2025-07-14 04:58:29,495 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-14 00:59:01] 2025-07-14 04:58:29,495 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-14 00:59:01] 2025-07-14 04:58:29,495 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-14 00:59:01] 2025-07-14 04:58:29,495 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-14 00:59:01] 2025-07-14 04:58:29,496 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-14 00:59:01] 2025-07-14 04:58:29,496 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-14 00:59:01] 2025-07-14 04:58:29,496 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-14 00:59:01] 2025-07-14 04:58:29,496 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-14 00:59:01] 2025-07-14 04:58:29,496 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-14 00:59:01] 2025-07-14 04:58:29,496 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-14 00:59:01] 2025-07-14 04:58:29,496 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-14 00:59:01] 2025-07-14 04:58:29,496 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-14 00:59:01] 2025-07-14 04:58:29,497 | INFO     | job 6720589275 has completed (purged errors)
[2025-07-14 00:59:01] 2025-07-14 04:58:29,497 | INFO     | overall cleanup function is called
[2025-07-14 00:59:01] 2025-07-14 04:58:30,506 | INFO     | --- collectZombieJob: --- 10, [236416]
[2025-07-14 00:59:01] 2025-07-14 04:58:30,506 | INFO     | zombie collector waiting for pid 236416
[2025-07-14 00:59:01] 2025-07-14 04:58:30,506 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-14 00:59:01] 2025-07-14 04:58:30,507 | INFO     | collected zombie processes
[2025-07-14 00:59:01] 2025-07-14 04:58:30,507 | INFO     | will attempt to kill all subprocesses of pid=236416
[2025-07-14 00:59:01] 2025-07-14 04:58:30,592 | INFO     | process IDs to be killed: [236416] (in reverse order)
[2025-07-14 00:59:01] 2025-07-14 04:58:30,655 | WARNING  | found no corresponding commands to process id(s)
[2025-07-14 00:59:01] 2025-07-14 04:58:30,656 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-14 00:59:01] 2025-07-14 04:58:30,664 | INFO     | did not find any defunct processes belonging to 236416
[2025-07-14 00:59:01] 2025-07-14 04:58:30,669 | INFO     | did not find any defunct processes belonging to 236416
[2025-07-14 00:59:01] 2025-07-14 04:58:30,669 | INFO     | ready for new job
[2025-07-14 00:59:01] 2025-07-14 04:58:30,669 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-14 00:59:01] 2025-07-14 04:58:30,670 | INFO     | ***************************************
[2025-07-14 00:59:01] 2025-07-14 04:58:30,670 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-14 00:59:01] 2025-07-14 04:58:30,670 | INFO     | ***************************************
[2025-07-14 00:59:01] 2025-07-14 04:58:30,670 | INFO     | 
[2025-07-14 00:59:01] 2025-07-14 04:58:30,673 | INFO     | architecture information:
[2025-07-14 00:59:01] 2025-07-14 04:58:30,673 | INFO     | executing command: cat /etc/os-release
[2025-07-14 00:59:01] 2025-07-14 04:58:30,695 | INFO     | cat /etc/os-release:
[2025-07-14 00:59:01] NAME="CentOS Linux"
[2025-07-14 00:59:01] VERSION="7 (Core)"
[2025-07-14 00:59:01] ID="centos"
[2025-07-14 00:59:01] ID_LIKE="rhel fedora"
[2025-07-14 00:59:01] VERSION_ID="7"
[2025-07-14 00:59:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-14 00:59:01] ANSI_COLOR="0;31"
[2025-07-14 00:59:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-14 00:59:01] HOME_URL="https://www.centos.org/"
[2025-07-14 00:59:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-14 00:59:01] 
[2025-07-14 00:59:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-14 00:59:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-14 00:59:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-14 00:59:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-14 00:59:01] 
[2025-07-14 00:59:01] 2025-07-14 04:58:30,695 | INFO     | ***************************************
[2025-07-14 00:59:01] 2025-07-14 04:58:31,197 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-14 00:59:01] 2025-07-14 04:58:31,225 | INFO     | sufficient remaining disk space (57316212736 B)
[2025-07-14 00:59:01] 2025-07-14 04:58:31,225 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-14 00:59:01] 2025-07-14 04:58:31,226 | INFO     | current server update state: UPDATING_FINAL
[2025-07-14 00:59:01] 2025-07-14 04:58:31,226 | INFO     | update_server=False
[2025-07-14 00:59:01] 2025-07-14 04:58:31,226 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-14 00:59:01] 2025-07-14 04:58:31,226 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-14 00:59:01] 2025-07-14 04:58:31,227 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-14 00:59:01] 2025-07-14 04:58:31,227 | INFO     | aborting loop
[2025-07-14 00:59:01] 2025-07-14 04:58:31,829 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-14 00:59:01] 2025-07-14 04:58:31,890 | INFO     | all data control threads have been joined
[2025-07-14 00:59:01] 2025-07-14 04:58:32,051 | INFO     | all job control threads have been joined
[2025-07-14 00:59:01] 2025-07-14 04:58:32,059 | INFO     | all payload control threads have been joined
[2025-07-14 00:59:01] 2025-07-14 04:58:32,231 | INFO     | [job] retrieve thread has finished
[2025-07-14 00:59:01] 2025-07-14 04:58:32,233 | INFO     | [job] job monitor thread has finished
[2025-07-14 00:59:01] 2025-07-14 04:58:32,262 | INFO     | [data] copytool_in thread has finished
[2025-07-14 00:59:01] 2025-07-14 04:58:32,327 | INFO     | [payload] execute_payloads thread has finished
[2025-07-14 00:59:01] 2025-07-14 04:58:32,390 | INFO     | [job] create_data_payload thread has finished
[2025-07-14 00:59:01] 2025-07-14 04:58:32,556 | INFO     | [job] validate thread has finished
[2025-07-14 00:59:01] 2025-07-14 04:58:32,896 | INFO     | [data] control thread has finished
[2025-07-14 00:59:01] 2025-07-14 04:58:33,053 | INFO     | [payload] validate_pre thread has finished
[2025-07-14 00:59:01] 2025-07-14 04:58:33,057 | INFO     | [job] control thread has finished
[2025-07-14 00:59:01] 2025-07-14 04:58:33,065 | INFO     | [payload] control thread has finished
[2025-07-14 00:59:01] 2025-07-14 04:58:33,187 | INFO     | [payload] failed_post thread has finished
[2025-07-14 00:59:01] 2025-07-14 04:58:33,282 | INFO     | [payload] validate_post thread has finished
[2025-07-14 00:59:01] 2025-07-14 04:58:33,840 | INFO     | [data] copytool_out thread has finished
[2025-07-14 00:59:01] 2025-07-14 04:58:34,081 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-14 00:59:01] 2025-07-14 04:58:35,086 | INFO     | [job] queue monitor thread has finished
[2025-07-14 00:59:01] 2025-07-14 04:58:35,236 | INFO     | [data] queue_monitor thread has finished
[2025-07-14 00:59:01] 2025-07-14 04:58:42,111 | INFO     | job.realtimelogging is not enabled
[2025-07-14 00:59:01] 2025-07-14 04:58:43,117 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-14 00:59:01] 2025-07-14 04:58:43,239 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140491930851136)>', '<ExcThread(monitor, started 140491173644032)>']
[2025-07-14 00:59:01] 2025-07-14 04:58:48,262 | INFO     | all workflow threads have been joined
[2025-07-14 00:59:01] 2025-07-14 04:58:48,262 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-14 00:59:01] 2025-07-14 04:58:48,263 | INFO     | traces error code: 0
[2025-07-14 00:59:01] 2025-07-14 04:58:48,263 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-14 00:59:01] 2025-07-14 04:59:01,213 | INFO     | PID=229936 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-14 00:59:01] 2025-07-14 04:59:01,213 | INFO     | found 0 job(s) in 20 queues
[2025-07-14 00:59:01] 2025-07-14 04:59:01,213 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-14 00:59:01] 2025-07-14 04:59:01,213 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-14 00:59:01] 2025-07-14 04:59:01,213 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-14 00:59:01] 2025-07-14 04:59:01,213 | CRITICAL | thread 'MainThread' is not alive
[2025-07-14 00:59:01] 2025-07-14 04:59:01,213 | INFO     | [monitor] control thread has ended
[2025-07-14 00:59:01] 2025-07-14 04:59:01,294 [wrapper] ==== pilot stdout END ====
[2025-07-14 00:59:01] 2025-07-14 04:59:01,299 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-14 00:59:01] 2025-07-14 04:59:01,304 [wrapper] pilotpid: 229936
[2025-07-14 00:59:01] 2025-07-14 04:59:01,309 [wrapper] Pilot exit status: 0
[2025-07-14 00:59:01] 2025-07-14 04:59:01,329 [wrapper] pandaids: 6720589275
[2025-07-14 00:59:01] 2025-07-14 04:59:01,379 [wrapper] cleanup supervisor_pilot 258816 229937
[2025-07-14 00:59:01] 2025-07-14 04:59:01,384 [wrapper] Test setup, not cleaning
[2025-07-14 00:59:01] 2025-07-14 04:59:01,389 [wrapper] apfmon messages muted
[2025-07-14 00:59:01] 2025-07-14 04:59:01,394 [wrapper] ==== wrapper stdout END ====
[2025-07-14 00:59:01] 2025-07-14 04:59:01,398 [wrapper] ==== wrapper stderr END ====
[2025-07-14 00:59:01]  *** Error codes and diagnostics ***
[2025-07-14 00:59:01]     "exeErrorCode": 0,
[2025-07-14 00:59:01]     "exeErrorDiag": "",
[2025-07-14 00:59:01]     "pilotErrorCode": 0,
[2025-07-14 00:59:01]     "pilotErrorDiag": "",
[2025-07-14 00:59:01]  *** Listing of results directory ***
[2025-07-14 00:59:01] total 574172
[2025-07-14 00:59:01] -rw-r--r-- 1 boincer umatlas    530466 Jul 13 23:27 pilot3.tar.gz
[2025-07-14 00:59:01] -rw-r--r-- 1 boincer umatlas      5112 Jul 13 23:43 queuedata.json
[2025-07-14 00:59:01] -rwx------ 1 boincer umatlas     36292 Jul 13 23:44 runpilot2-wrapper.sh
[2025-07-14 00:59:01] -rw-r--r-- 1 boincer umatlas       100 Jul 13 23:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-14 00:59:01] -rwxr-xr-x 1 boincer umatlas      7986 Jul 13 23:45 run_atlas
[2025-07-14 00:59:01] -rw-r--r-- 1 boincer umatlas       105 Jul 13 23:45 job.xml
[2025-07-14 00:59:01] -rw-r--r-- 2 boincer umatlas     15095 Jul 13 23:45 start_atlas.sh
[2025-07-14 00:59:01] drwxrwx--x 2 boincer umatlas      4096 Jul 13 23:45 shared
[2025-07-14 00:59:01] -rw-r--r-- 2 boincer umatlas    542882 Jul 13 23:45 input.tar.gz
[2025-07-14 00:59:01] -rw-r--r-- 2 boincer umatlas 320790375 Jul 13 23:45 EVNT.45482060._000148.pool.root.1
[2025-07-14 00:59:01] -rw-r--r-- 1 boincer umatlas         0 Jul 13 23:45 boinc_lockfile
[2025-07-14 00:59:01] -rw-r--r-- 1 boincer umatlas      2532 Jul 13 23:45 pandaJob.out
[2025-07-14 00:59:01] -rw------- 1 boincer umatlas    976227 Jul 13 23:45 agis_schedconf.cvmfs.json
[2025-07-14 00:59:01] -rw------- 1 boincer umatlas   1588641 Jul 13 23:45 agis_ddmendpoints.agis.ALL.json
[2025-07-14 00:59:01] drwx------ 4 boincer umatlas      4096 Jul 13 23:45 pilot3
[2025-07-14 00:59:01] -rw-r--r-- 1 boincer umatlas      6356 Jul 14 00:55 init_data.xml
[2025-07-14 00:59:01] -rw------- 1 boincer umatlas 261837799 Jul 14 00:57 HITS.45482062._003687.pool.root.1
[2025-07-14 00:59:01] -rw------- 1 boincer umatlas      1041 Jul 14 00:58 memory_monitor_summary.json
[2025-07-14 00:59:01] -rw------- 1 boincer umatlas    301821 Jul 14 00:58 log.45482062._003687.job.log.tgz.1
[2025-07-14 00:59:01] -rw-r--r-- 1 boincer umatlas       529 Jul 14 00:58 boinc_task_state.xml
[2025-07-14 00:59:01] -rw------- 1 boincer umatlas        95 Jul 14 00:58 pilot_heartbeat.json
[2025-07-14 00:59:01] -rw------- 1 boincer umatlas      7833 Jul 14 00:58 heartbeat.json
[2025-07-14 00:59:01] -rw-r--r-- 1 boincer umatlas      8192 Jul 14 00:58 boinc_mmap_file
[2025-07-14 00:59:01] -rw-r--r-- 1 boincer umatlas        27 Jul 14 00:58 wrapper_checkpoint.txt
[2025-07-14 00:59:01] -rw------- 1 boincer umatlas       816 Jul 14 00:59 pilotlog.txt
[2025-07-14 00:59:01] -rw------- 1 boincer umatlas    425479 Jul 14 00:59 log.45482062._003687.job.log.1
[2025-07-14 00:59:01] -rw------- 1 boincer umatlas       357 Jul 14 00:59 output.list
[2025-07-14 00:59:01] -rw-r--r-- 1 boincer umatlas       620 Jul 14 00:59 runtime_log
[2025-07-14 00:59:01] -rw------- 1 boincer umatlas    747520 Jul 14 00:59 result.tar.gz
[2025-07-14 00:59:01] -rw------- 1 boincer umatlas       659 Jul 14 00:59 TCJODmRIPv7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmoUFLDmyE4gXo.diag
[2025-07-14 00:59:01] -rw-r--r-- 1 boincer umatlas      8670 Jul 14 00:59 runtime_log.err
[2025-07-14 00:59:01] -rw-r--r-- 1 boincer umatlas     21786 Jul 14 00:59 stderr.txt
[2025-07-14 00:59:01] HITS file was successfully produced:
[2025-07-14 00:59:01] -rw------- 1 boincer umatlas 261837799 Jul 14 00:57 shared/HITS.pool.root.1
[2025-07-14 00:59:01]  *** Contents of shared directory: ***
[2025-07-14 00:59:01] total 570264
[2025-07-14 00:59:01] -rw-r--r-- 2 boincer umatlas     15095 Jul 13 23:45 start_atlas.sh
[2025-07-14 00:59:01] -rw-r--r-- 2 boincer umatlas    542882 Jul 13 23:45 input.tar.gz
[2025-07-14 00:59:01] -rw-r--r-- 2 boincer umatlas 320790375 Jul 13 23:45 ATLAS.root_0
[2025-07-14 00:59:01] -rw------- 1 boincer umatlas 261837799 Jul 14 00:57 HITS.pool.root.1
[2025-07-14 00:59:01] -rw------- 1 boincer umatlas    747520 Jul 14 00:59 result.tar.gz
00:59:03 (225925): run_atlas exited; CPU time 31638.078146
00:59:03 (225925): called boinc_finish(0)

</stderr_txt>
]]>

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