Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:22:41 (42049): wrapper (7.7.26015): starting
20:22:41 (42049): wrapper: running run_atlas (--nthreads 8)
[2025-07-12 20:22:41] Arguments: --nthreads 8
[2025-07-12 20:22:41] Threads: 8
[2025-07-12 20:22:41] Checking for CVMFS
[2025-07-12 20:22:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-12 20:22:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-12 20:22:41] Running cvmfs_config stat atlas.cern.ch
[2025-07-12 20:22:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-12 20:22:41] 2.11.2.0 5309 66799 352116 148261 3 10 14687321 18432000 1512 130560 0 334796505 99.267 626670629 67316 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-12 20:22:41] CVMFS is ok
[2025-07-12 20:22:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-12 20:22:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-12 20:22:41] Further information can be found at the LHC@home message board.
[2025-07-12 20:22:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-12 20:22:41] Checking for apptainer binary...
[2025-07-12 20:22:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-12 20:22:41] Running /usr/bin/apptainer --version
[2025-07-12 20:22:41] apptainer version 1.3.2-1.el7
[2025-07-12 20:22:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-12 20:22:43] c-212-7.aglt2.org
[2025-07-12 20:22:43] apptainer works
[2025-07-12 20:22:43] Set ATHENA_PROC_NUMBER=8
[2025-07-12 20:22:43] Set ATHENA_CORE_NUMBER=8
[2025-07-12 20:22:43] Starting ATLAS job with PandaID=6720638742
[2025-07-12 20:22:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-12 21:30:18]  *** The last 200 lines of the pilot log: ***
[2025-07-12 21:30:18]  is_altstaged=None
[2025-07-12 21:30:18]  is_tar=False
[2025-07-12 21:30:18]  lfn=log.45482148._007363.job.log.tgz.1
[2025-07-12 21:30:18]  mtime=0
[2025-07-12 21:30:18]  protocol_id=None
[2025-07-12 21:30:18]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-12 21:30:18]  replicas=None
[2025-07-12 21:30:18]  scope=mc23_13p6TeV
[2025-07-12 21:30:18]  status=None
[2025-07-12 21:30:18]  status_code=0
[2025-07-12 21:30:18]  storage_token=
[2025-07-12 21:30:18]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6720638742/log.45482148._007363.job.log.tgz.1
[2025-07-12 21:30:18]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/37/36/log.45482148._007363.job.log.tgz.1
[2025-07-12 21:30:18]  workdir=None
[2025-07-12 21:30:18] ]
[2025-07-12 21:30:18] 2025-07-13 01:29:40,537 | INFO     | transferring file log.45482148._007363.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6720638742/log.45482148._007363.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-12 21:30:18] 2025-07-13 01:29:40,537 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6720638742/log.45482148._007363.job.log.tgz.1 /tmp/boinchome/slots/0/log.45482148._007363.job
[2025-07-12 21:30:18] 2025-07-13 01:29:40,551 | INFO     | adding to output.list: log.45482148._007363.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/37/36/log.45482148._007363.job.log.tg
[2025-07-12 21:30:18] 2025-07-13 01:29:40,551 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-12 21:30:18] 2025-07-13 01:29:40,551 | INFO     | summary of transferred files:
[2025-07-12 21:30:18] 2025-07-13 01:29:40,551 | INFO     |  -- lfn=log.45482148._007363.job.log.tgz.1, status_code=0, status=transferred
[2025-07-12 21:30:18] 2025-07-13 01:29:40,551 | INFO     | stage-out finished correctly
[2025-07-12 21:30:18] 2025-07-13 01:29:42,471 | INFO     | monitor loop #308: job 0:6720638742 is in state 'finished'
[2025-07-12 21:30:18] 2025-07-13 01:29:42,471 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-12 21:30:18] 2025-07-13 01:29:43,301 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-12 21:30:18] 2025-07-13 01:29:44,685 | INFO     | job 6720638742 has state=finished
[2025-07-12 21:30:18] 2025-07-13 01:29:44,685 | INFO     | preparing for final server update for job 6720638742 in state='finished'
[2025-07-12 21:30:18] 2025-07-13 01:29:44,686 | INFO     | this job has now completed (state=finished)
[2025-07-12 21:30:18] 2025-07-13 01:29:44,686 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-12 21:30:18] 2025-07-13 01:29:44,686 | INFO     | log transfer has been attempted: DONE
[2025-07-12 21:30:18] 2025-07-13 01:29:44,686 | INFO     | job 6720638742 has finished - writing final server update
[2025-07-12 21:30:18] 2025-07-13 01:29:44,686 | INFO     | total number of processed events: 400 (read)
[2025-07-12 21:30:18] 2025-07-13 01:29:44,687 | INFO     | executing command: lscpu
[2025-07-12 21:30:18] 2025-07-13 01:29:44,707 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-12 21:30:18] 2025-07-13 01:29:44,974 | INFO     | monitor loop #309: job 0:6720638742 is in state 'finished'
[2025-07-12 21:30:18] 2025-07-13 01:29:44,974 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-12 21:30:18] 2025-07-13 01:29:46,500 | INFO     | PID=45719 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-12 21:30:18] 2025-07-13 01:29:46,728 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-12 21:30:18] 2025-07-13 01:29:46,730 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2644.9180000000038
[2025-07-12 21:30:18] 2025-07-13 01:29:46,737 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6720638742/memory_monitor_summary.json (trf name=prmon)
[2025-07-12 21:30:18] 2025-07-13 01:29:46,737 | INFO     | extracted standard info from prmon json
[2025-07-12 21:30:18] 2025-07-13 01:29:46,737 | INFO     | extracted standard memory fields from prmon json
[2025-07-12 21:30:18] 2025-07-13 01:29:46,737 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-12 21:30:18] 2025-07-13 01:29:46,738 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-12 21:30:18] 2025-07-13 01:29:46,738 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-12 21:30:18] 2025-07-13 01:29:46,738 | INFO     | fitting pss+swap vs Time
[2025-07-12 21:30:18] 2025-07-13 01:29:46,738 | INFO     | sum of square deviations: 63666310.0
[2025-07-12 21:30:18] 2025-07-13 01:29:46,738 | INFO     | sum of deviations: -2143961509.9999998
[2025-07-12 21:30:18] 2025-07-13 01:29:46,739 | INFO     | mean x: 1752368262.0
[2025-07-12 21:30:18] 2025-07-13 01:29:46,739 | INFO     | mean y: 2663797.5084745763
[2025-07-12 21:30:18] 2025-07-13 01:29:46,739 | INFO     | -- intersect: 59013624305.09239
[2025-07-12 21:30:18] 2025-07-13 01:29:46,739 | INFO     | intersect: 59013624305.09239
[2025-07-12 21:30:18] 2025-07-13 01:29:46,739 | INFO     | chi2: 0.019476088394183137
[2025-07-12 21:30:18] 2025-07-13 01:29:46,739 | INFO     | -- intersect: 59013624305.09239
[2025-07-12 21:30:18] 2025-07-13 01:29:46,739 | INFO     | current memory leak: -33.67 B/s (using 59 data points, chi2=0.02)
[2025-07-12 21:30:18] 2025-07-13 01:29:46,739 | INFO     | could have reported an average CPU frequency of 2644 MHz (6 samples)
[2025-07-12 21:30:18] 2025-07-13 01:29:46,739 | INFO     | ..............................
[2025-07-12 21:30:18] 2025-07-13 01:29:46,739 | INFO     | . Timing measurements:
[2025-07-12 21:30:18] 2025-07-13 01:29:46,739 | INFO     | . get job = 0 s
[2025-07-12 21:30:18] 2025-07-13 01:29:46,739 | INFO     | . initial setup = 1 s
[2025-07-12 21:30:18] 2025-07-13 01:29:46,739 | INFO     | . payload setup = 3 s
[2025-07-12 21:30:18] 2025-07-13 01:29:46,739 | INFO     | . stage-in = 0 s
[2025-07-12 21:30:18] 2025-07-13 01:29:46,739 | INFO     | . payload execution = 3991 s
[2025-07-12 21:30:18] 2025-07-13 01:29:46,739 | INFO     | . stage-out = 0 s
[2025-07-12 21:30:18] 2025-07-13 01:29:46,739 | INFO     | . log creation = 0 s
[2025-07-12 21:30:18] 2025-07-13 01:29:46,739 | INFO     | ..............................
[2025-07-12 21:30:18] 2025-07-13 01:29:47,113 | INFO     | 
[2025-07-12 21:30:18] 2025-07-13 01:29:47,114 | INFO     | job summary report
[2025-07-12 21:30:18] 2025-07-13 01:29:47,114 | INFO     | --------------------------------------------------
[2025-07-12 21:30:18] 2025-07-13 01:29:47,114 | INFO     | PanDA job id: 6720638742
[2025-07-12 21:30:18] 2025-07-13 01:29:47,114 | INFO     | task id: 45482148
[2025-07-12 21:30:18] 2025-07-13 01:29:47,114 | INFO     | errors: (none)
[2025-07-12 21:30:18] 2025-07-13 01:29:47,114 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-12 21:30:18] 2025-07-13 01:29:47,114 | INFO     | pilot state: finished 
[2025-07-12 21:30:18] 2025-07-13 01:29:47,114 | INFO     | transexitcode: 0
[2025-07-12 21:30:18] 2025-07-13 01:29:47,114 | INFO     | exeerrorcode: 0
[2025-07-12 21:30:18] 2025-07-13 01:29:47,114 | INFO     | exeerrordiag: 
[2025-07-12 21:30:18] 2025-07-13 01:29:47,114 | INFO     | exitcode: 0
[2025-07-12 21:30:18] 2025-07-13 01:29:47,115 | INFO     | exitmsg: OK
[2025-07-12 21:30:18] 2025-07-13 01:29:47,115 | INFO     | cpuconsumptiontime: 30138 s
[2025-07-12 21:30:18] 2025-07-13 01:29:47,115 | INFO     | nevents: 400
[2025-07-12 21:30:18] 2025-07-13 01:29:47,115 | INFO     | neventsw: 0
[2025-07-12 21:30:18] 2025-07-13 01:29:47,115 | INFO     | pid: 59595
[2025-07-12 21:30:18] 2025-07-13 01:29:47,115 | INFO     | pgrp: 59595
[2025-07-12 21:30:18] 2025-07-13 01:29:47,115 | INFO     | corecount: 8
[2025-07-12 21:30:18] 2025-07-13 01:29:47,115 | INFO     | event service: False
[2025-07-12 21:30:18] 2025-07-13 01:29:47,115 | INFO     | sizes: {0: 2393572, 2: 2393834, 10: 2393862, 3998: 2419837, 3999: 2428835, 4002: 2428891, 4005: 2429213}
[2025-07-12 21:30:18] 2025-07-13 01:29:47,115 | INFO     | --------------------------------------------------
[2025-07-12 21:30:18] 2025-07-13 01:29:47,115 | INFO     | 
[2025-07-12 21:30:18] 2025-07-13 01:29:47,115 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-12 21:30:18] 2025-07-13 01:29:47,127 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-12 21:30:18] 2025-07-13 01:29:47,127 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-12 21:30:18] 2025-07-13 01:29:47,127 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-12 21:30:18] 2025-07-13 01:29:47,127 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-12 21:30:18] 2025-07-13 01:29:47,127 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-12 21:30:18] 2025-07-13 01:29:47,127 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-12 21:30:18] 2025-07-13 01:29:47,127 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-12 21:30:18] 2025-07-13 01:29:47,127 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-12 21:30:18] 2025-07-13 01:29:47,127 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-12 21:30:18] 2025-07-13 01:29:47,128 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-12 21:30:18] 2025-07-13 01:29:47,128 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-12 21:30:18] 2025-07-13 01:29:47,128 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-12 21:30:18] 2025-07-13 01:29:47,128 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-12 21:30:18] 2025-07-13 01:29:47,128 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-12 21:30:18] 2025-07-13 01:29:47,128 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-12 21:30:18] 2025-07-13 01:29:47,128 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-12 21:30:18] 2025-07-13 01:29:47,128 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-12 21:30:18] 2025-07-13 01:29:47,128 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-12 21:30:18] 2025-07-13 01:29:47,128 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-12 21:30:18] 2025-07-13 01:29:47,128 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-12 21:30:18] 2025-07-13 01:29:47,128 | INFO     | job 6720638742 has completed (purged errors)
[2025-07-12 21:30:18] 2025-07-13 01:29:47,128 | INFO     | overall cleanup function is called
[2025-07-12 21:30:18] 2025-07-13 01:29:48,135 | INFO     | --- collectZombieJob: --- 10, [59595]
[2025-07-12 21:30:18] 2025-07-13 01:29:48,135 | INFO     | zombie collector waiting for pid 59595
[2025-07-12 21:30:18] 2025-07-13 01:29:48,135 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-12 21:30:18] 2025-07-13 01:29:48,135 | INFO     | collected zombie processes
[2025-07-12 21:30:18] 2025-07-13 01:29:48,135 | INFO     | will attempt to kill all subprocesses of pid=59595
[2025-07-12 21:30:18] 2025-07-13 01:29:48,232 | INFO     | process IDs to be killed: [59595] (in reverse order)
[2025-07-12 21:30:18] 2025-07-13 01:29:48,273 | WARNING  | found no corresponding commands to process id(s)
[2025-07-12 21:30:18] 2025-07-13 01:29:48,273 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-12 21:30:18] 2025-07-13 01:29:48,277 | INFO     | did not find any defunct processes belonging to 59595
[2025-07-12 21:30:18] 2025-07-13 01:29:48,279 | INFO     | did not find any defunct processes belonging to 59595
[2025-07-12 21:30:18] 2025-07-13 01:29:48,279 | INFO     | ready for new job
[2025-07-12 21:30:18] 2025-07-13 01:29:48,279 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-12 21:30:18] 2025-07-13 01:29:48,280 | INFO     | ***************************************
[2025-07-12 21:30:18] 2025-07-13 01:29:48,280 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-12 21:30:18] 2025-07-13 01:29:48,280 | INFO     | ***************************************
[2025-07-12 21:30:18] 2025-07-13 01:29:48,281 | INFO     | 
[2025-07-12 21:30:18] 2025-07-13 01:29:48,283 | INFO     | architecture information:
[2025-07-12 21:30:18] 2025-07-13 01:29:48,283 | INFO     | executing command: cat /etc/os-release
[2025-07-12 21:30:18] 2025-07-13 01:29:48,293 | INFO     | cat /etc/os-release:
[2025-07-12 21:30:18] NAME="CentOS Linux"
[2025-07-12 21:30:18] VERSION="7 (Core)"
[2025-07-12 21:30:18] ID="centos"
[2025-07-12 21:30:18] ID_LIKE="rhel fedora"
[2025-07-12 21:30:18] VERSION_ID="7"
[2025-07-12 21:30:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-12 21:30:18] ANSI_COLOR="0;31"
[2025-07-12 21:30:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-12 21:30:18] HOME_URL="https://www.centos.org/"
[2025-07-12 21:30:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-12 21:30:18] 
[2025-07-12 21:30:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-12 21:30:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-12 21:30:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-12 21:30:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-12 21:30:18] 
[2025-07-12 21:30:18] 2025-07-13 01:29:48,293 | INFO     | ***************************************
[2025-07-12 21:30:18] 2025-07-13 01:29:48,795 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-12 21:30:18] 2025-07-13 01:29:48,807 | INFO     | sufficient remaining disk space (105809707008 B)
[2025-07-12 21:30:18] 2025-07-13 01:29:48,807 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-12 21:30:18] 2025-07-13 01:29:48,807 | INFO     | current server update state: UPDATING_FINAL
[2025-07-12 21:30:18] 2025-07-13 01:29:48,808 | INFO     | update_server=False
[2025-07-12 21:30:18] 2025-07-13 01:29:48,808 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-12 21:30:18] 2025-07-13 01:29:48,808 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-12 21:30:18] 2025-07-13 01:29:48,808 | INFO     | aborting loop
[2025-07-12 21:30:18] 2025-07-13 01:29:48,808 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-12 21:30:18] 2025-07-13 01:29:49,311 | INFO     | all job control threads have been joined
[2025-07-12 21:30:18] 2025-07-13 01:29:49,344 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-12 21:30:18] 2025-07-13 01:29:49,351 | INFO     | all data control threads have been joined
[2025-07-12 21:30:18] 2025-07-13 01:29:49,796 | INFO     | all payload control threads have been joined
[2025-07-12 21:30:18] 2025-07-13 01:29:49,813 | INFO     | [job] retrieve thread has finished
[2025-07-12 21:30:18] 2025-07-13 01:29:49,813 | INFO     | [job] job monitor thread has finished
[2025-07-12 21:30:18] 2025-07-13 01:29:49,890 | INFO     | [payload] validate_pre thread has finished
[2025-07-12 21:30:18] 2025-07-13 01:29:50,031 | INFO     | [payload] execute_payloads thread has finished
[2025-07-12 21:30:18] 2025-07-13 01:29:50,115 | INFO     | [data] copytool_in thread has finished
[2025-07-12 21:30:18] 2025-07-13 01:29:50,131 | INFO     | [payload] failed_post thread has finished
[2025-07-12 21:30:18] 2025-07-13 01:29:50,316 | INFO     | [job] control thread has finished
[2025-07-12 21:30:18] 2025-07-13 01:29:50,357 | INFO     | [data] control thread has finished
[2025-07-12 21:30:18] 2025-07-13 01:29:50,707 | INFO     | [payload] validate_post thread has finished
[2025-07-12 21:30:18] 2025-07-13 01:29:50,801 | INFO     | [payload] control thread has finished
[2025-07-12 21:30:18] 2025-07-13 01:29:50,813 | INFO     | [data] copytool_out thread has finished
[2025-07-12 21:30:18] 2025-07-13 01:29:51,148 | INFO     | [job] validate thread has finished
[2025-07-12 21:30:18] 2025-07-13 01:29:51,228 | INFO     | [job] create_data_payload thread has finished
[2025-07-12 21:30:18] 2025-07-13 01:29:51,788 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-12 21:30:18] 2025-07-13 01:29:52,793 | INFO     | [job] queue monitor thread has finished
[2025-07-12 21:30:18] 2025-07-13 01:29:53,349 | INFO     | [data] queue_monitor thread has finished
[2025-07-12 21:30:18] 2025-07-13 01:29:59,714 | INFO     | job.realtimelogging is not enabled
[2025-07-12 21:30:18] 2025-07-13 01:30:00,719 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-12 21:30:18] 2025-07-13 01:30:00,990 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140010444592960)>', '<ExcThread(monitor, started 140010003089152)>']
[2025-07-12 21:30:18] 2025-07-13 01:30:06,015 | INFO     | all workflow threads have been joined
[2025-07-12 21:30:18] 2025-07-13 01:30:06,016 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-12 21:30:18] 2025-07-13 01:30:06,016 | INFO     | traces error code: 0
[2025-07-12 21:30:18] 2025-07-13 01:30:06,016 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-12 21:30:18] 2025-07-13 01:30:18,681 | INFO     | PID=45719 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-12 21:30:18] 2025-07-13 01:30:18,681 | INFO     | found 0 job(s) in 20 queues
[2025-07-12 21:30:18] 2025-07-13 01:30:18,681 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-12 21:30:18] 2025-07-13 01:30:18,681 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-12 21:30:18] 2025-07-13 01:30:18,681 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-12 21:30:18] 2025-07-13 01:30:18,681 | INFO     | [monitor] control thread has ended
[2025-07-12 21:30:18] 2025-07-13 01:30:18,738 [wrapper] ==== pilot stdout END ====
[2025-07-12 21:30:18] 2025-07-13 01:30:18,740 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-12 21:30:18] 2025-07-13 01:30:18,741 [wrapper] pilotpid: 45719
[2025-07-12 21:30:18] 2025-07-13 01:30:18,743 [wrapper] Pilot exit status: 0
[2025-07-12 21:30:18] 2025-07-13 01:30:18,748 [wrapper] pandaids: 6720638742
[2025-07-12 21:30:18] 2025-07-13 01:30:18,777 [wrapper] cleanup supervisor_pilot 69286 45720
[2025-07-12 21:30:18] 2025-07-13 01:30:18,779 [wrapper] Test setup, not cleaning
[2025-07-12 21:30:18] 2025-07-13 01:30:18,780 [wrapper] apfmon messages muted
[2025-07-12 21:30:18] 2025-07-13 01:30:18,782 [wrapper] ==== wrapper stdout END ====
[2025-07-12 21:30:18] 2025-07-13 01:30:18,783 [wrapper] ==== wrapper stderr END ====
[2025-07-12 21:30:18]  *** Error codes and diagnostics ***
[2025-07-12 21:30:18]     "exeErrorCode": 0,
[2025-07-12 21:30:18]     "exeErrorDiag": "",
[2025-07-12 21:30:18]     "pilotErrorCode": 0,
[2025-07-12 21:30:18]     "pilotErrorDiag": "",
[2025-07-12 21:30:18]  *** Listing of results directory ***
[2025-07-12 21:30:18] total 577076
[2025-07-12 21:30:18] -rw-r--r-- 1 boincer umatlas    530466 Jul  5 08:17 pilot3.tar.gz
[2025-07-12 21:30:18] -rw-r--r-- 1 boincer umatlas      5112 Jul  5 08:27 queuedata.json
[2025-07-12 21:30:18] -rwx------ 1 boincer umatlas     36292 Jul  5 08:27 runpilot2-wrapper.sh
[2025-07-12 21:30:18] -rw-r--r-- 1 boincer umatlas       100 Jul 12 20:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-12 21:30:18] -rwxr-xr-x 1 boincer umatlas      7986 Jul 12 20:22 run_atlas
[2025-07-12 21:30:18] -rw-r--r-- 1 boincer umatlas       105 Jul 12 20:22 job.xml
[2025-07-12 21:30:18] -rw-r--r-- 2 boincer umatlas 318265228 Jul 12 20:22 EVNT.45482146._000295.pool.root.1
[2025-07-12 21:30:18] -rw-r--r-- 2 boincer umatlas     15095 Jul 12 20:22 start_atlas.sh
[2025-07-12 21:30:18] drwxrwx--x 2 boincer umatlas      4096 Jul 12 20:22 shared
[2025-07-12 21:30:18] -rw-r--r-- 2 boincer umatlas    542906 Jul 12 20:22 input.tar.gz
[2025-07-12 21:30:18] -rw-r--r-- 1 boincer umatlas         0 Jul 12 20:22 boinc_lockfile
[2025-07-12 21:30:18] -rw-r--r-- 1 boincer umatlas      2615 Jul 12 20:22 pandaJob.out
[2025-07-12 21:30:18] -rw------- 1 boincer umatlas    976550 Jul 12 20:22 agis_schedconf.cvmfs.json
[2025-07-12 21:30:18] -rw------- 1 boincer umatlas   1588641 Jul 12 20:22 agis_ddmendpoints.agis.ALL.json
[2025-07-12 21:30:18] drwx------ 4 boincer umatlas      4096 Jul 12 20:22 pilot3
[2025-07-12 21:30:18] -rw------- 1 boincer umatlas 267374136 Jul 12 21:29 HITS.45482148._007363.pool.root.1
[2025-07-12 21:30:18] -rw-r--r-- 1 boincer umatlas      6386 Jul 12 21:29 init_data.xml
[2025-07-12 21:30:18] -rw-r--r-- 1 boincer umatlas       529 Jul 12 21:29 boinc_task_state.xml
[2025-07-12 21:30:18] -rw------- 1 boincer umatlas        95 Jul 12 21:29 pilot_heartbeat.json
[2025-07-12 21:30:18] -rw------- 1 boincer umatlas      1038 Jul 12 21:29 memory_monitor_summary.json
[2025-07-12 21:30:18] -rw------- 1 boincer umatlas    294948 Jul 12 21:29 log.45482148._007363.job.log.tgz.1
[2025-07-12 21:30:18] -rw------- 1 boincer umatlas      7799 Jul 12 21:29 heartbeat.json
[2025-07-12 21:30:18] -rw-r--r-- 1 boincer umatlas      8192 Jul 12 21:30 boinc_mmap_file
[2025-07-12 21:30:18] -rw-r--r-- 1 boincer umatlas        27 Jul 12 21:30 wrapper_checkpoint.txt
[2025-07-12 21:30:18] -rw------- 1 boincer umatlas       745 Jul 12 21:30 pilotlog.txt
[2025-07-12 21:30:18] -rw------- 1 boincer umatlas    410404 Jul 12 21:30 log.45482148._007363.job.log.1
[2025-07-12 21:30:18] -rw------- 1 boincer umatlas       357 Jul 12 21:30 output.list
[2025-07-12 21:30:18] -rw-r--r-- 1 boincer umatlas       620 Jul 12 21:30 runtime_log
[2025-07-12 21:30:18] -rw------- 1 boincer umatlas    727040 Jul 12 21:30 result.tar.gz
[2025-07-12 21:30:18] -rw-r--r-- 1 boincer umatlas      8655 Jul 12 21:30 runtime_log.err
[2025-07-12 21:30:18] -rw------- 1 boincer umatlas       657 Jul 12 21:30 REWMDmhAHs7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmggALDmIkvWVo.diag
[2025-07-12 21:30:18] -rw-r--r-- 1 boincer umatlas     21575 Jul 12 21:30 stderr.txt
[2025-07-12 21:30:18] HITS file was successfully produced:
[2025-07-12 21:30:18] -rw------- 1 boincer umatlas 267374136 Jul 12 21:29 shared/HITS.pool.root.1
[2025-07-12 21:30:18]  *** Contents of shared directory: ***
[2025-07-12 21:30:18] total 573184
[2025-07-12 21:30:18] -rw-r--r-- 2 boincer umatlas 318265228 Jul 12 20:22 ATLAS.root_0
[2025-07-12 21:30:18] -rw-r--r-- 2 boincer umatlas     15095 Jul 12 20:22 start_atlas.sh
[2025-07-12 21:30:18] -rw-r--r-- 2 boincer umatlas    542906 Jul 12 20:22 input.tar.gz
[2025-07-12 21:30:18] -rw------- 1 boincer umatlas 267374136 Jul 12 21:29 HITS.pool.root.1
[2025-07-12 21:30:18] -rw------- 1 boincer umatlas    727040 Jul 12 21:30 result.tar.gz
21:30:19 (42049): run_atlas exited; CPU time 29720.153292
21:30:19 (42049): called boinc_finish(0)

</stderr_txt>
]]>

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