Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:59:28 (3356002): wrapper (7.7.26015): starting
23:59:28 (3356002): wrapper: running run_atlas (--nthreads 4)
[2025-07-12 23:59:28] Arguments: --nthreads 4
[2025-07-12 23:59:28] Threads: 4
[2025-07-12 23:59:28] Checking for CVMFS
[2025-07-12 23:59:28] No cvmfs_config command found, will try listing directly
[2025-07-12 23:59:28] CVMFS is ok
[2025-07-12 23:59:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-12 23:59:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-12 23:59:28] Further information can be found at the LHC@home message board.
[2025-07-12 23:59:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-12 23:59:28] Checking for apptainer binary...
[2025-07-12 23:59:28] which: no apptainer in ((null))
[2025-07-12 23:59:28] apptainer is not installed, using version from CVMFS
[2025-07-12 23:59:28] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-12 23:59:28] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut09.grid.cesnet.cz
[2025-07-12 23:59:28] apptainer works
[2025-07-12 23:59:28] Set ATHENA_PROC_NUMBER=4
[2025-07-12 23:59:28] Set ATHENA_CORE_NUMBER=4
[2025-07-12 23:59:28] Starting ATLAS job with PandaID=6727212523
[2025-07-12 23:59:28] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
03:59:01 (3479903): wrapper (7.7.26015): starting
03:59:01 (3479903): wrapper: running run_atlas (--nthreads 4)
[2025-07-13 03:59:01] Arguments: --nthreads 4
[2025-07-13 03:59:01] Threads: 4
[2025-07-13 03:59:01] This job has been restarted, cleaning up previous attempt
[2025-07-13 03:59:01] Checking for CVMFS
[2025-07-13 03:59:01] No cvmfs_config command found, will try listing directly
[2025-07-13 03:59:01] CVMFS is ok
[2025-07-13 03:59:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-13 03:59:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-13 03:59:02] Further information can be found at the LHC@home message board.
[2025-07-13 03:59:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-13 03:59:02] Checking for apptainer binary...
[2025-07-13 03:59:02] which: no apptainer in ((null))
[2025-07-13 03:59:02] apptainer is not installed, using version from CVMFS
[2025-07-13 03:59:02] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-13 03:59:02] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut09.grid.cesnet.cz
[2025-07-13 03:59:02] apptainer works
[2025-07-13 03:59:02] Set ATHENA_PROC_NUMBER=4
[2025-07-13 03:59:02] Set ATHENA_CORE_NUMBER=4
[2025-07-13 03:59:02] Starting ATLAS job with PandaID=6727212523
[2025-07-13 03:59:02] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-13 09:06:25]  *** The last 200 lines of the pilot log: ***
[2025-07-13 09:06:25] 2025-07-13 07:05:52,303 | INFO     | extracted standard memory fields from prmon json
[2025-07-13 09:06:25] 2025-07-13 07:05:52,303 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-13 09:06:25] 2025-07-13 07:05:52,303 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-13 09:06:25] 2025-07-13 07:05:52,303 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-13 09:06:25] 2025-07-13 07:05:52,306 | INFO     | fitting pss+swap vs Time
[2025-07-13 09:06:25] 2025-07-13 07:05:52,306 | INFO     | sum of square deviations: 8540720135.5
[2025-07-13 09:06:25] 2025-07-13 07:05:52,307 | INFO     | sum of deviations: -126338105920.5
[2025-07-13 09:06:25] 2025-07-13 07:05:52,307 | INFO     | mean x: 1752381152.5
[2025-07-13 09:06:25] 2025-07-13 07:05:52,307 | INFO     | mean y: 2432122.6854304634
[2025-07-13 09:06:25] 2025-07-13 07:05:52,307 | INFO     | -- intersect: 25924428411.663685
[2025-07-13 09:06:25] 2025-07-13 07:05:52,307 | INFO     | intersect: 25924428411.663685
[2025-07-13 09:06:25] 2025-07-13 07:05:52,308 | INFO     | chi2: 2.3297796182323807
[2025-07-13 09:06:25] 2025-07-13 07:05:52,308 | INFO     | sum of square deviations: 8123493708.0
[2025-07-13 09:06:25] 2025-07-13 07:05:52,309 | INFO     | sum of deviations: -106258806405.99998
[2025-07-13 09:06:25] 2025-07-13 07:05:52,309 | INFO     | mean x: 1752381000.0
[2025-07-13 09:06:25] 2025-07-13 07:05:52,309 | INFO     | mean y: 2439375.548821549
[2025-07-13 09:06:25] 2025-07-13 07:05:52,309 | INFO     | -- intersect: 22924339745.235504
[2025-07-13 09:06:25] 2025-07-13 07:05:52,309 | INFO     | intersect: 22924339745.235504
[2025-07-13 09:06:25] 2025-07-13 07:05:52,309 | INFO     | chi2: 1.6718821064509026
[2025-07-13 09:06:25] 2025-07-13 07:05:52,309 | INFO     | current chi2=1.6718821064509026 (change=28.23861564557034 %)
[2025-07-13 09:06:25] 2025-07-13 07:05:52,310 | INFO     | sum of square deviations: 7720081493.0
[2025-07-13 09:06:25] 2025-07-13 07:05:52,311 | INFO     | sum of deviations: -104080185306.0
[2025-07-13 09:06:25] 2025-07-13 07:05:52,311 | INFO     | mean x: 1752380847.5
[2025-07-13 09:06:25] 2025-07-13 07:05:52,311 | INFO     | mean y: 2440199.198630137
[2025-07-13 09:06:25] 2025-07-13 07:05:52,311 | INFO     | -- intersect: 23627595386.98537
[2025-07-13 09:06:25] 2025-07-13 07:05:52,311 | INFO     | intersect: 23627595386.98537
[2025-07-13 09:06:25] 2025-07-13 07:05:52,311 | INFO     | chi2: 1.6652407993321279
[2025-07-13 09:06:25] 2025-07-13 07:05:52,311 | INFO     | current chi2=1.6652407993321279 (change=0.39723537282619903 %)
[2025-07-13 09:06:25] 2025-07-13 07:05:52,311 | INFO     | right removable region: 291
[2025-07-13 09:06:25] 2025-07-13 07:05:52,311 | INFO     | sum of square deviations: 8123493708.0
[2025-07-13 09:06:25] 2025-07-13 07:05:52,313 | INFO     | sum of deviations: -150921931952.00003
[2025-07-13 09:06:25] 2025-07-13 07:05:52,313 | INFO     | mean x: 1752381305.0
[2025-07-13 09:06:25] 2025-07-13 07:05:52,313 | INFO     | mean y: 2440979.053872054
[2025-07-13 09:06:25] 2025-07-13 07:05:52,313 | INFO     | -- intersect: 32558971650.914276
[2025-07-13 09:06:25] 2025-07-13 07:05:52,313 | INFO     | intersect: 32558971650.914276
[2025-07-13 09:06:25] 2025-07-13 07:05:52,313 | INFO     | chi2: 1.249720643137385
[2025-07-13 09:06:25] 2025-07-13 07:05:52,313 | INFO     | current chi2=1.249720643137385 (change=46.35884727648376 %)
[2025-07-13 09:06:25] 2025-07-13 07:05:52,313 | INFO     | sum of square deviations: 7720081493.0
[2025-07-13 09:06:25] 2025-07-13 07:05:52,314 | INFO     | sum of deviations: -138730370021.00003
[2025-07-13 09:06:25] 2025-07-13 07:05:52,314 | INFO     | mean x: 1752381457.5
[2025-07-13 09:06:25] 2025-07-13 07:05:52,314 | INFO     | mean y: 2436362.0753424657
[2025-07-13 09:06:25] 2025-07-13 07:05:52,314 | INFO     | -- intersect: 31492845917.641205
[2025-07-13 09:06:25] 2025-07-13 07:05:52,314 | INFO     | intersect: 31492845917.641205
[2025-07-13 09:06:25] 2025-07-13 07:05:52,315 | INFO     | chi2: 1.2372507930734122
[2025-07-13 09:06:25] 2025-07-13 07:05:52,315 | INFO     | current chi2=1.2372507930734122 (change=0.9978110013984931 %)
[2025-07-13 09:06:25] 2025-07-13 07:05:52,315 | INFO     | left removable region: 20
[2025-07-13 09:06:25] 2025-07-13 07:05:52,315 | INFO     | sum of square deviations: 6171352920.0
[2025-07-13 09:06:25] 2025-07-13 07:05:52,316 | INFO     | sum of deviations: -88548052620.0
[2025-07-13 09:06:25] 2025-07-13 07:05:52,316 | INFO     | mean x: 1752381427.0
[2025-07-13 09:06:25] 2025-07-13 07:05:52,316 | INFO     | mean y: 2433102.9040590404
[2025-07-13 09:06:25] 2025-07-13 07:05:52,316 | INFO     | -- intersect: 25146022332.00728
[2025-07-13 09:06:25] 2025-07-13 07:05:52,316 | INFO     | intersect: 25146022332.00728
[2025-07-13 09:06:25] 2025-07-13 07:05:52,316 | INFO     | chi2: 0.5043684132639974
[2025-07-13 09:06:25] 2025-07-13 07:05:52,316 | INFO     | -- intersect: 25146022332.00728
[2025-07-13 09:06:25] 2025-07-13 07:05:52,316 | INFO     | current memory leak: -14.35 B/s (using 271 data points, chi2=0.50)
[2025-07-13 09:06:25] 2025-07-13 07:05:52,317 | INFO     | could have reported an average CPU frequency of 3235 MHz (14 samples)
[2025-07-13 09:06:25] 2025-07-13 07:05:52,317 | INFO     | ..............................
[2025-07-13 09:06:25] 2025-07-13 07:05:52,317 | INFO     | . Timing measurements:
[2025-07-13 09:06:25] 2025-07-13 07:05:52,317 | INFO     | . get job = 0 s
[2025-07-13 09:06:25] 2025-07-13 07:05:52,317 | INFO     | . initial setup = 1 s
[2025-07-13 09:06:25] 2025-07-13 07:05:52,317 | INFO     | . payload setup = 4 s
[2025-07-13 09:06:25] 2025-07-13 07:05:52,317 | INFO     | . stage-in = 0 s
[2025-07-13 09:06:25] 2025-07-13 07:05:52,317 | INFO     | . payload execution = 18375 s
[2025-07-13 09:06:25] 2025-07-13 07:05:52,317 | INFO     | . stage-out = 0 s
[2025-07-13 09:06:25] 2025-07-13 07:05:52,317 | INFO     | . log creation = 0 s
[2025-07-13 09:06:25] 2025-07-13 07:05:52,317 | INFO     | ..............................
[2025-07-13 09:06:25] 2025-07-13 07:05:52,542 | INFO     | 
[2025-07-13 09:06:25] 2025-07-13 07:05:52,542 | INFO     | job summary report
[2025-07-13 09:06:25] 2025-07-13 07:05:52,542 | INFO     | --------------------------------------------------
[2025-07-13 09:06:25] 2025-07-13 07:05:52,542 | INFO     | PanDA job id: 6727212523
[2025-07-13 09:06:25] 2025-07-13 07:05:52,542 | INFO     | task id: 45436060
[2025-07-13 09:06:25] 2025-07-13 07:05:52,542 | INFO     | errors: (none)
[2025-07-13 09:06:25] 2025-07-13 07:05:52,542 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-13 09:06:25] 2025-07-13 07:05:52,542 | INFO     | pilot state: finished 
[2025-07-13 09:06:25] 2025-07-13 07:05:52,542 | INFO     | transexitcode: 0
[2025-07-13 09:06:25] 2025-07-13 07:05:52,542 | INFO     | exeerrorcode: 0
[2025-07-13 09:06:25] 2025-07-13 07:05:52,542 | INFO     | exeerrordiag: 
[2025-07-13 09:06:25] 2025-07-13 07:05:52,542 | INFO     | exitcode: 0
[2025-07-13 09:06:25] 2025-07-13 07:05:52,542 | INFO     | exitmsg: OK
[2025-07-13 09:06:25] 2025-07-13 07:05:52,543 | INFO     | cpuconsumptiontime: 71731 s
[2025-07-13 09:06:25] 2025-07-13 07:05:52,543 | INFO     | nevents: 400
[2025-07-13 09:06:25] 2025-07-13 07:05:52,543 | INFO     | neventsw: 0
[2025-07-13 09:06:25] 2025-07-13 07:05:52,543 | INFO     | pid: 3491172
[2025-07-13 09:06:25] 2025-07-13 07:05:52,543 | INFO     | pgrp: 3491172
[2025-07-13 09:06:25] 2025-07-13 07:05:52,543 | INFO     | corecount: 4
[2025-07-13 09:06:25] 2025-07-13 07:05:52,543 | INFO     | event service: False
[2025-07-13 09:06:25] 2025-07-13 07:05:52,543 | INFO     | sizes: {0: 2393608, 3: 2393870, 11: 2393898, 18383: 2426637, 18384: 2435713, 18388: 2435851}
[2025-07-13 09:06:25] 2025-07-13 07:05:52,543 | INFO     | --------------------------------------------------
[2025-07-13 09:06:25] 2025-07-13 07:05:52,543 | INFO     | 
[2025-07-13 09:06:25] 2025-07-13 07:05:52,543 | INFO     | executing command: ls -lF /scratch/boinc/var/slot28/slots/0
[2025-07-13 09:06:25] 2025-07-13 07:05:52,556 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-13 09:06:25] 2025-07-13 07:05:52,556 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-13 09:06:25] 2025-07-13 07:05:52,556 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-13 09:06:25] 2025-07-13 07:05:52,556 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-13 09:06:25] 2025-07-13 07:05:52,556 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-13 09:06:25] 2025-07-13 07:05:52,556 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-13 09:06:25] 2025-07-13 07:05:52,556 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-13 09:06:25] 2025-07-13 07:05:52,556 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-13 09:06:25] 2025-07-13 07:05:52,556 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-13 09:06:25] 2025-07-13 07:05:52,556 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-13 09:06:25] 2025-07-13 07:05:52,556 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-13 09:06:25] 2025-07-13 07:05:52,556 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-13 09:06:25] 2025-07-13 07:05:52,556 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-13 09:06:25] 2025-07-13 07:05:52,556 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-13 09:06:25] 2025-07-13 07:05:52,556 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-13 09:06:25] 2025-07-13 07:05:52,556 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-13 09:06:25] 2025-07-13 07:05:52,557 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-13 09:06:25] 2025-07-13 07:05:52,557 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-13 09:06:25] 2025-07-13 07:05:52,557 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-13 09:06:25] 2025-07-13 07:05:52,557 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-13 09:06:25] 2025-07-13 07:05:52,557 | INFO     | job 6727212523 has completed (purged errors)
[2025-07-13 09:06:25] 2025-07-13 07:05:52,557 | INFO     | overall cleanup function is called
[2025-07-13 09:06:25] 2025-07-13 07:05:53,564 | INFO     | --- collectZombieJob: --- 10, [3491172]
[2025-07-13 09:06:25] 2025-07-13 07:05:53,564 | INFO     | zombie collector waiting for pid 3491172
[2025-07-13 09:06:25] 2025-07-13 07:05:53,564 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-13 09:06:25] 2025-07-13 07:05:53,564 | INFO     | collected zombie processes
[2025-07-13 09:06:25] 2025-07-13 07:05:53,564 | INFO     | will attempt to kill all subprocesses of pid=3491172
[2025-07-13 09:06:25] 2025-07-13 07:05:53,682 | INFO     | process IDs to be killed: [3491172] (in reverse order)
[2025-07-13 09:06:25] 2025-07-13 07:05:53,729 | WARNING  | found no corresponding commands to process id(s)
[2025-07-13 09:06:25] 2025-07-13 07:05:53,729 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-13 09:06:25] 2025-07-13 07:05:53,733 | INFO     | did not find any defunct processes belonging to 3491172
[2025-07-13 09:06:25] 2025-07-13 07:05:53,737 | INFO     | did not find any defunct processes belonging to 3491172
[2025-07-13 09:06:25] 2025-07-13 07:05:53,737 | INFO     | ready for new job
[2025-07-13 09:06:25] 2025-07-13 07:05:53,737 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-13 09:06:25] 2025-07-13 07:05:53,739 | INFO     | ***************************************
[2025-07-13 09:06:25] 2025-07-13 07:05:53,739 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-13 09:06:25] 2025-07-13 07:05:53,739 | INFO     | ***************************************
[2025-07-13 09:06:25] 2025-07-13 07:05:53,739 | INFO     | 
[2025-07-13 09:06:25] 2025-07-13 07:05:53,741 | INFO     | architecture information:
[2025-07-13 09:06:25] 2025-07-13 07:05:53,741 | INFO     | executing command: cat /etc/os-release
[2025-07-13 09:06:25] 2025-07-13 07:05:53,750 | INFO     | cat /etc/os-release:
[2025-07-13 09:06:25] NAME="CentOS Linux"
[2025-07-13 09:06:25] VERSION="7 (Core)"
[2025-07-13 09:06:25] ID="centos"
[2025-07-13 09:06:25] ID_LIKE="rhel fedora"
[2025-07-13 09:06:25] VERSION_ID="7"
[2025-07-13 09:06:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-13 09:06:25] ANSI_COLOR="0;31"
[2025-07-13 09:06:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-13 09:06:25] HOME_URL="https://www.centos.org/"
[2025-07-13 09:06:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-13 09:06:25] 
[2025-07-13 09:06:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-13 09:06:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-13 09:06:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-13 09:06:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-13 09:06:25] 
[2025-07-13 09:06:25] 2025-07-13 07:05:53,750 | INFO     | ***************************************
[2025-07-13 09:06:25] 2025-07-13 07:05:54,253 | INFO     | executing command: df -mP /scratch/boinc/var/slot28/slots/0
[2025-07-13 09:06:25] 2025-07-13 07:05:54,263 | INFO     | sufficient remaining disk space (703718227968 B)
[2025-07-13 09:06:25] 2025-07-13 07:05:54,263 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-13 09:06:25] 2025-07-13 07:05:54,264 | INFO     | current server update state: UPDATING_FINAL
[2025-07-13 09:06:25] 2025-07-13 07:05:54,264 | INFO     | update_server=False
[2025-07-13 09:06:25] 2025-07-13 07:05:54,264 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-13 09:06:25] 2025-07-13 07:05:54,264 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-13 09:06:25] 2025-07-13 07:05:54,264 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-13 09:06:25] 2025-07-13 07:05:54,264 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-13 09:06:25] 2025-07-13 07:05:54,265 | INFO     | aborting loop
[2025-07-13 09:06:25] 2025-07-13 07:05:54,304 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-13 09:06:25] 2025-07-13 07:05:54,834 | INFO     | all data control threads have been joined
[2025-07-13 09:06:25] 2025-07-13 07:05:55,229 | INFO     | all payload control threads have been joined
[2025-07-13 09:06:25] 2025-07-13 07:05:55,269 | INFO     | [job] retrieve thread has finished
[2025-07-13 09:06:25] 2025-07-13 07:05:55,270 | INFO     | [job] queue monitor thread has finished
[2025-07-13 09:06:25] 2025-07-13 07:05:55,270 | INFO     | [job] job monitor thread has finished
[2025-07-13 09:06:25] 2025-07-13 07:05:55,398 | INFO     | [payload] execute_payloads thread has finished
[2025-07-13 09:06:25] 2025-07-13 07:05:55,584 | INFO     | [payload] validate_pre thread has finished
[2025-07-13 09:06:25] 2025-07-13 07:05:55,811 | INFO     | all job control threads have been joined
[2025-07-13 09:06:25] 2025-07-13 07:05:55,839 | INFO     | [data] control thread has finished
[2025-07-13 09:06:25] 2025-07-13 07:05:55,941 | INFO     | [payload] validate_post thread has finished
[2025-07-13 09:06:25] 2025-07-13 07:05:56,234 | INFO     | [payload] control thread has finished
[2025-07-13 09:06:25] 2025-07-13 07:05:56,270 | INFO     | [data] copytool_out thread has finished
[2025-07-13 09:06:25] 2025-07-13 07:05:56,482 | INFO     | [job] create_data_payload thread has finished
[2025-07-13 09:06:25] 2025-07-13 07:05:56,508 | INFO     | [payload] failed_post thread has finished
[2025-07-13 09:06:25] 2025-07-13 07:05:56,522 | INFO     | [data] copytool_in thread has finished
[2025-07-13 09:06:25] 2025-07-13 07:05:56,621 | INFO     | [job] validate thread has finished
[2025-07-13 09:06:25] 2025-07-13 07:05:56,817 | INFO     | [job] control thread has finished
[2025-07-13 09:06:25] 2025-07-13 07:05:58,310 | INFO     | [data] queue_monitor thread has finished
[2025-07-13 09:06:25] 2025-07-13 07:06:05,130 | INFO     | job.realtimelogging is not enabled
[2025-07-13 09:06:25] 2025-07-13 07:06:06,136 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-13 09:06:25] 2025-07-13 07:06:06,754 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22995514554176)>', '<ExcThread(monitor, started 22995269535488)>']
[2025-07-13 09:06:25] 2025-07-13 07:06:11,779 | INFO     | all workflow threads have been joined
[2025-07-13 09:06:25] 2025-07-13 07:06:11,779 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-13 09:06:25] 2025-07-13 07:06:11,779 | INFO     | traces error code: 0
[2025-07-13 09:06:25] 2025-07-13 07:06:11,779 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-13 09:06:25] 2025-07-13 07:06:25,277 | INFO     | PID=3484196 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-13 09:06:25] 2025-07-13 07:06:25,278 | INFO     | found 0 job(s) in 20 queues
[2025-07-13 09:06:25] 2025-07-13 07:06:25,278 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-13 09:06:25] 2025-07-13 07:06:25,278 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-13 09:06:25] 2025-07-13 07:06:25,278 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-13 09:06:25] 2025-07-13 07:06:25,278 | INFO     | [monitor] control thread has ended
[2025-07-13 09:06:25] 2025-07-13 07:06:25,349 [wrapper] ==== pilot stdout END ====
[2025-07-13 09:06:25] 2025-07-13 07:06:25,351 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-13 09:06:25] 2025-07-13 07:06:25,353 [wrapper] pilotpid: 3484196
[2025-07-13 09:06:25] 2025-07-13 07:06:25,354 [wrapper] Pilot exit status: 0
[2025-07-13 09:06:25] 2025-07-13 07:06:25,361 [wrapper] pandaids: 6727212523 6727212523
[2025-07-13 09:06:25] 2025-07-13 07:06:25,395 [wrapper] cleanup supervisor_pilot 3650377 3484197
[2025-07-13 09:06:25] 2025-07-13 07:06:25,397 [wrapper] Test setup, not cleaning
[2025-07-13 09:06:25] 2025-07-13 07:06:25,399 [wrapper] apfmon messages muted
[2025-07-13 09:06:25] 2025-07-13 07:06:25,400 [wrapper] ==== wrapper stdout END ====
[2025-07-13 09:06:25] 2025-07-13 07:06:25,402 [wrapper] ==== wrapper stderr END ====
[2025-07-13 09:06:25]  *** Error codes and diagnostics ***
[2025-07-13 09:06:25]     "exeErrorCode": 0,
[2025-07-13 09:06:25]     "exeErrorDiag": "",
[2025-07-13 09:06:25]     "pilotErrorCode": 0,
[2025-07-13 09:06:25]     "pilotErrorDiag": "",
[2025-07-13 09:06:25]  *** Listing of results directory ***
[2025-07-13 09:06:25] total 729012
[2025-07-13 09:06:25] drwx------ 4 boinc boinc      4096 Jun 17 12:04 pilot3
[2025-07-13 09:06:25] -rw-r--r-- 1 boinc boinc    530466 Jul 10 17:40 pilot3.tar.gz
[2025-07-13 09:06:25] -rw-r--r-- 1 boinc boinc      5112 Jul 10 17:44 queuedata.json
[2025-07-13 09:06:25] -rwx------ 1 boinc boinc     36292 Jul 10 17:45 runpilot2-wrapper.sh
[2025-07-13 09:06:25] -rw-r--r-- 1 boinc boinc       100 Jul 12 23:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-13 09:06:25] -rwxr-xr-x 1 boinc boinc      7986 Jul 12 23:59 run_atlas
[2025-07-13 09:06:25] -rw-r--r-- 1 boinc boinc       105 Jul 12 23:59 job.xml
[2025-07-13 09:06:25] -rw-r--r-- 3 boinc boinc 266797638 Jul 12 23:59 EVNT.45436057._000004.pool.root.1
[2025-07-13 09:06:25] -rw-r--r-- 3 boinc boinc 266797638 Jul 12 23:59 ATLAS.root_0
[2025-07-13 09:06:25] -rw-r--r-- 2 boinc boinc     15095 Jul 12 23:59 start_atlas.sh
[2025-07-13 09:06:25] drwxrwx--x 2 boinc boinc      4096 Jul 12 23:59 shared
[2025-07-13 09:06:25] -rw-r--r-- 2 boinc boinc    542903 Jul 12 23:59 input.tar.gz
[2025-07-13 09:06:25] -rw-r--r-- 1 boinc boinc         0 Jul 12 23:59 boinc_lockfile
[2025-07-13 09:06:25] -rw-r--r-- 1 boinc boinc      2612 Jul 13 03:59 pandaJob.out
[2025-07-13 09:06:25] -rw------- 1 boinc boinc    976558 Jul 13 03:59 agis_schedconf.cvmfs.json
[2025-07-13 09:06:25] -rw-r--r-- 1 boinc boinc      6642 Jul 13 05:41 init_data.xml
[2025-07-13 09:06:25] -rw------- 1 boinc boinc 204943392 Jul 13 09:05 HITS.45436060._000092.pool.root.1
[2025-07-13 09:06:25] -rw-r--r-- 1 boinc boinc       532 Jul 13 09:05 boinc_task_state.xml
[2025-07-13 09:06:25] -rw------- 1 boinc boinc      1035 Jul 13 09:05 memory_monitor_summary.json
[2025-07-13 09:06:25] -rw------- 1 boinc boinc   1588641 Jul 13 09:05 agis_ddmendpoints.agis.ALL.json
[2025-07-13 09:06:25] -rw------- 1 boinc boinc    374758 Jul 13 09:05 log.45436060._000092.job.log.tgz.1
[2025-07-13 09:06:25] -rw------- 1 boinc boinc      7823 Jul 13 09:05 heartbeat.json
[2025-07-13 09:06:25] -rw-r--r-- 1 boinc boinc      8192 Jul 13 09:06 boinc_mmap_file
[2025-07-13 09:06:25] -rw-r--r-- 1 boinc boinc        29 Jul 13 09:06 wrapper_checkpoint.txt
[2025-07-13 09:06:25] -rw------- 1 boinc boinc        97 Jul 13 09:06 pilot_heartbeat.json
[2025-07-13 09:06:25] -rw------- 1 boinc boinc       747 Jul 13 09:06 pilotlog.txt
[2025-07-13 09:06:25] -rw------- 1 boinc boinc   1674529 Jul 13 09:06 log.45436060._000092.job.log.1
[2025-07-13 09:06:25] -rw------- 1 boinc boinc       357 Jul 13 09:06 output.list
[2025-07-13 09:06:25] -rw-r--r-- 1 boinc boinc       620 Jul 13 09:06 runtime_log
[2025-07-13 09:06:25] -rw------- 1 boinc boinc   2068480 Jul 13 09:06 result.tar.gz
[2025-07-13 09:06:25] -rw-r--r-- 1 boinc boinc      9104 Jul 13 09:06 runtime_log.err
[2025-07-13 09:06:25] -rw------- 1 boinc boinc       790 Jul 13 09:06 5jdLDmgd8t7n9Rq4apOajLDm4fhM0noT9bVof3QYDmOXsKDmJkr5Yn.diag
[2025-07-13 09:06:25] -rw-r--r-- 1 boinc boinc     22578 Jul 13 09:06 stderr.txt
[2025-07-13 09:06:25] HITS file was successfully produced:
[2025-07-13 09:06:25] -rw------- 1 boinc boinc 204943392 Jul 13 09:05 shared/HITS.pool.root.1
[2025-07-13 09:06:25]  *** Contents of shared directory: ***
[2025-07-13 09:06:25] total 463264
[2025-07-13 09:06:25] -rw-r--r-- 3 boinc boinc 266797638 Jul 12 23:59 ATLAS.root_0
[2025-07-13 09:06:25] -rw-r--r-- 2 boinc boinc     15095 Jul 12 23:59 start_atlas.sh
[2025-07-13 09:06:25] -rw-r--r-- 2 boinc boinc    542903 Jul 12 23:59 input.tar.gz
[2025-07-13 09:06:25] -rw------- 1 boinc boinc 204943392 Jul 13 09:05 HITS.pool.root.1
[2025-07-13 09:06:25] -rw------- 1 boinc boinc   2068480 Jul 13 09:06 result.tar.gz
09:06:26 (3479903): run_atlas exited; CPU time 72029.713585
09:06:26 (3479903): called boinc_finish(0)

</stderr_txt>
]]>

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