Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:38:45 (1706741): wrapper (7.7.26015): starting
00:38:45 (1706741): wrapper: running run_atlas (--nthreads 10)
[2025-07-12 00:38:45] Arguments: --nthreads 10
[2025-07-12 00:38:45] Threads: 10
[2025-07-12 00:38:45] Checking for CVMFS
[2025-07-12 00:38:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-12 00:38:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-12 00:38:46] Running cvmfs_config stat atlas.cern.ch
[2025-07-12 00:38:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-12 00:38:47] 2.13.0.0 839487 5140 209832 148231 3 234 32232758 32935937 15630 16776704 0 23872885 99.706 16893319 30183 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-12 00:38:47] CVMFS is ok
[2025-07-12 00:38:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-12 00:38:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-12 00:38:47] Further information can be found at the LHC@home message board.
[2025-07-12 00:38:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-12 00:38:47] Checking for apptainer binary...
[2025-07-12 00:38:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-12 00:38:47] Running /usr/bin/apptainer --version
[2025-07-12 00:38:47] apptainer version 1.4.1-1.el9
[2025-07-12 00:38:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-12 00:38:47] c-6-3.aglt2.org
[2025-07-12 00:38:47] apptainer works
[2025-07-12 00:38:47] Set ATHENA_PROC_NUMBER=10
[2025-07-12 00:38:47] Set ATHENA_CORE_NUMBER=10
[2025-07-12 00:38:47] Starting ATLAS job with PandaID=6720536132
[2025-07-12 00:38:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-12 10:59:04]  *** The last 200 lines of the pilot log: ***
[2025-07-12 10:59:04] 2025-07-12 14:58:27,065 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-12 10:59:04] 2025-07-12 14:58:28,284 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-12 10:59:04] 2025-07-12 14:58:28,294 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.154424999999
[2025-07-12 10:59:04] 2025-07-12 14:58:28,305 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6720536132/memory_monitor_summary.json (trf name=prmon)
[2025-07-12 10:59:04] 2025-07-12 14:58:28,318 | INFO     | extracted standard info from prmon json
[2025-07-12 10:59:04] 2025-07-12 14:58:28,318 | INFO     | extracted standard memory fields from prmon json
[2025-07-12 10:59:04] 2025-07-12 14:58:28,319 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-12 10:59:04] 2025-07-12 14:58:28,319 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-12 10:59:04] 2025-07-12 14:58:28,320 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-12 10:59:04] 2025-07-12 14:58:28,336 | INFO     | fitting pss+swap vs Time
[2025-07-12 10:59:04] 2025-07-12 14:58:28,344 | INFO     | sum of square deviations: 69347143180.71822
[2025-07-12 10:59:04] 2025-07-12 14:58:28,364 | INFO     | sum of deviations: 1259496235.1417236
[2025-07-12 10:59:04] 2025-07-12 14:58:28,364 | INFO     | mean x: 1752313779.1301482
[2025-07-12 10:59:04] 2025-07-12 14:58:28,364 | INFO     | mean y: 2280484.3146622735
[2025-07-12 10:59:04] 2025-07-12 14:58:28,364 | INFO     | -- intersect: -29545377.66569176
[2025-07-12 10:59:04] 2025-07-12 14:58:28,364 | INFO     | intersect: -29545377.66569176
[2025-07-12 10:59:04] 2025-07-12 14:58:28,365 | INFO     | chi2: 3.5999119806626263
[2025-07-12 10:59:04] 2025-07-12 14:58:28,366 | INFO     | sum of square deviations: 67647609519.3305
[2025-07-12 10:59:04] 2025-07-12 14:58:28,384 | INFO     | sum of deviations: 44728382579.51153
[2025-07-12 10:59:04] 2025-07-12 14:58:28,384 | INFO     | mean x: 1752313626.6362126
[2025-07-12 10:59:04] 2025-07-12 14:58:28,385 | INFO     | mean y: 2284364.6279069767
[2025-07-12 10:59:04] 2025-07-12 14:58:28,385 | INFO     | -- intersect: -1156339788.5149922
[2025-07-12 10:59:04] 2025-07-12 14:58:28,385 | INFO     | intersect: -1156339788.5149922
[2025-07-12 10:59:04] 2025-07-12 14:58:28,386 | INFO     | chi2: 2.9210263523635485
[2025-07-12 10:59:04] 2025-07-12 14:58:28,386 | INFO     | current chi2=2.9210263523635485 (change=18.85839520371043 %)
[2025-07-12 10:59:04] 2025-07-12 14:58:28,386 | INFO     | right removable region: 601
[2025-07-12 10:59:04] 2025-07-12 14:58:28,387 | INFO     | sum of square deviations: 67647264866.77916
[2025-07-12 10:59:04] 2025-07-12 14:58:28,408 | INFO     | sum of deviations: -125640149742.30228
[2025-07-12 10:59:04] 2025-07-12 14:58:28,409 | INFO     | mean x: 1752313931.639535
[2025-07-12 10:59:04] 2025-07-12 14:58:28,409 | INFO     | mean y: 2291848.2059800667
[2025-07-12 10:59:04] 2025-07-12 14:58:28,409 | INFO     | -- intersect: 3256835623.187669
[2025-07-12 10:59:04] 2025-07-12 14:58:28,409 | INFO     | intersect: 3256835623.187669
[2025-07-12 10:59:04] 2025-07-12 14:58:28,410 | INFO     | chi2: 1.4285046016232144
[2025-07-12 10:59:04] 2025-07-12 14:58:28,410 | INFO     | current chi2=1.4285046016232144 (change=60.31834641245107 %)
[2025-07-12 10:59:04] 2025-07-12 14:58:28,416 | INFO     | sum of square deviations: 65975387077.73223
[2025-07-12 10:59:04] 2025-07-12 14:58:28,447 | INFO     | sum of deviations: -155022193612.75873
[2025-07-12 10:59:04] 2025-07-12 14:58:28,447 | INFO     | mean x: 1752314084.1490788
[2025-07-12 10:59:04] 2025-07-12 14:58:28,447 | INFO     | mean y: 2294523.165829146
[2025-07-12 10:59:04] 2025-07-12 14:58:28,447 | INFO     | -- intersect: 4119702321.0657825
[2025-07-12 10:59:04] 2025-07-12 14:58:28,448 | INFO     | intersect: 4119702321.0657825
[2025-07-12 10:59:04] 2025-07-12 14:58:28,448 | INFO     | chi2: 1.2900137467726913
[2025-07-12 10:59:04] 2025-07-12 14:58:28,449 | INFO     | current chi2=1.2900137467726913 (change=9.694813351889483 %)
[2025-07-12 10:59:04] 2025-07-12 14:58:28,449 | INFO     | left removable region: 20
[2025-07-12 10:59:04] 2025-07-12 14:58:28,450 | INFO     | sum of square deviations: 60811550649.46677
[2025-07-12 10:59:04] 2025-07-12 14:58:28,466 | INFO     | sum of deviations: -83851635498.70744
[2025-07-12 10:59:04] 2025-07-12 14:58:28,466 | INFO     | mean x: 1752314206.1635113
[2025-07-12 10:59:04] 2025-07-12 14:58:28,466 | INFO     | mean y: 2296075.5232358
[2025-07-12 10:59:04] 2025-07-12 14:58:28,466 | INFO     | -- intersect: 2418521455.8197675
[2025-07-12 10:59:04] 2025-07-12 14:58:28,467 | INFO     | intersect: 2418521455.8197675
[2025-07-12 10:59:04] 2025-07-12 14:58:28,467 | INFO     | chi2: 0.5574931013530391
[2025-07-12 10:59:04] 2025-07-12 14:58:28,474 | INFO     | -- intersect: 2418521455.8197675
[2025-07-12 10:59:04] 2025-07-12 14:58:28,474 | INFO     | current memory leak: -1.38 B/s (using 581 data points, chi2=0.56)
[2025-07-12 10:59:04] 2025-07-12 14:58:28,475 | INFO     | could have reported an average CPU frequency of 2600 MHz (23 samples)
[2025-07-12 10:59:04] 2025-07-12 14:58:28,475 | INFO     | ..............................
[2025-07-12 10:59:04] 2025-07-12 14:58:28,475 | INFO     | . Timing measurements:
[2025-07-12 10:59:04] 2025-07-12 14:58:28,475 | INFO     | . get job = 0 s
[2025-07-12 10:59:04] 2025-07-12 14:58:28,475 | INFO     | . initial setup = 6 s
[2025-07-12 10:59:04] 2025-07-12 14:58:28,475 | INFO     | . payload setup = 41 s
[2025-07-12 10:59:04] 2025-07-12 14:58:28,475 | INFO     | . stage-in = 0 s
[2025-07-12 10:59:04] 2025-07-12 14:58:28,476 | INFO     | . payload execution = 37008 s
[2025-07-12 10:59:04] 2025-07-12 14:58:28,476 | INFO     | . stage-out = 4 s
[2025-07-12 10:59:04] 2025-07-12 14:58:28,476 | INFO     | . log creation = 0 s
[2025-07-12 10:59:04] 2025-07-12 14:58:28,476 | INFO     | ..............................
[2025-07-12 10:59:04] 2025-07-12 14:58:29,094 | INFO     | 
[2025-07-12 10:59:04] 2025-07-12 14:58:29,094 | INFO     | job summary report
[2025-07-12 10:59:04] 2025-07-12 14:58:29,094 | INFO     | --------------------------------------------------
[2025-07-12 10:59:04] 2025-07-12 14:58:29,094 | INFO     | PanDA job id: 6720536132
[2025-07-12 10:59:04] 2025-07-12 14:58:29,094 | INFO     | task id: 45482040
[2025-07-12 10:59:04] 2025-07-12 14:58:29,094 | INFO     | errors: (none)
[2025-07-12 10:59:04] 2025-07-12 14:58:29,094 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-12 10:59:04] 2025-07-12 14:58:29,094 | INFO     | pilot state: finished 
[2025-07-12 10:59:04] 2025-07-12 14:58:29,095 | INFO     | transexitcode: 0
[2025-07-12 10:59:04] 2025-07-12 14:58:29,095 | INFO     | exeerrorcode: 0
[2025-07-12 10:59:04] 2025-07-12 14:58:29,095 | INFO     | exeerrordiag: 
[2025-07-12 10:59:04] 2025-07-12 14:58:29,095 | INFO     | exitcode: 0
[2025-07-12 10:59:04] 2025-07-12 14:58:29,095 | INFO     | exitmsg: OK
[2025-07-12 10:59:04] 2025-07-12 14:58:29,095 | INFO     | cpuconsumptiontime: 67747 s
[2025-07-12 10:59:04] 2025-07-12 14:58:29,095 | INFO     | nevents: 400
[2025-07-12 10:59:04] 2025-07-12 14:58:29,095 | INFO     | neventsw: 0
[2025-07-12 10:59:04] 2025-07-12 14:58:29,095 | INFO     | pid: 1723465
[2025-07-12 10:59:04] 2025-07-12 14:58:29,095 | INFO     | pgrp: 1723465
[2025-07-12 10:59:04] 2025-07-12 14:58:29,095 | INFO     | corecount: 10
[2025-07-12 10:59:04] 2025-07-12 14:58:29,096 | INFO     | event service: False
[2025-07-12 10:59:04] 2025-07-12 14:58:29,096 | INFO     | sizes: {0: 2392671, 1: 2393356, 2: 2393555, 13: 2393555, 23: 2393873, 24: 2393901, 37054: 2434781, 37059: 2443779, 37060: 2443835, 37081: 2444029}
[2025-07-12 10:59:04] 2025-07-12 14:58:29,096 | INFO     | --------------------------------------------------
[2025-07-12 10:59:04] 2025-07-12 14:58:29,096 | INFO     | 
[2025-07-12 10:59:04] 2025-07-12 14:58:29,096 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-12 10:59:04] 2025-07-12 14:58:29,117 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-12 10:59:04] 2025-07-12 14:58:29,117 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-12 10:59:04] 2025-07-12 14:58:29,117 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-12 10:59:04] 2025-07-12 14:58:29,117 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-12 10:59:04] 2025-07-12 14:58:29,118 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-12 10:59:04] 2025-07-12 14:58:29,118 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-12 10:59:04] 2025-07-12 14:58:29,118 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-12 10:59:04] 2025-07-12 14:58:29,118 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-12 10:59:04] 2025-07-12 14:58:29,118 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-12 10:59:04] 2025-07-12 14:58:29,118 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-12 10:59:04] 2025-07-12 14:58:29,118 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-12 10:59:04] 2025-07-12 14:58:29,118 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-12 10:59:04] 2025-07-12 14:58:29,118 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-12 10:59:04] 2025-07-12 14:58:29,118 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-12 10:59:04] 2025-07-12 14:58:29,119 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-12 10:59:04] 2025-07-12 14:58:29,119 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-12 10:59:04] 2025-07-12 14:58:29,119 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-12 10:59:04] 2025-07-12 14:58:29,119 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-12 10:59:04] 2025-07-12 14:58:29,119 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-12 10:59:04] 2025-07-12 14:58:29,119 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-12 10:59:04] 2025-07-12 14:58:29,119 | INFO     | job 6720536132 has completed (purged errors)
[2025-07-12 10:59:04] 2025-07-12 14:58:29,120 | INFO     | overall cleanup function is called
[2025-07-12 10:59:04] 2025-07-12 14:58:30,135 | INFO     | --- collectZombieJob: --- 10, [1723465]
[2025-07-12 10:59:04] 2025-07-12 14:58:30,136 | INFO     | zombie collector waiting for pid 1723465
[2025-07-12 10:59:04] 2025-07-12 14:58:30,136 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-12 10:59:04] 2025-07-12 14:58:30,136 | INFO     | collected zombie processes
[2025-07-12 10:59:04] 2025-07-12 14:58:30,136 | INFO     | will attempt to kill all subprocesses of pid=1723465
[2025-07-12 10:59:04] 2025-07-12 14:58:31,198 | INFO     | PID=1714496 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-12 10:59:04] 2025-07-12 14:58:31,198 | INFO     | .. there are 39 such processes running
[2025-07-12 10:59:04] 2025-07-12 14:58:31,344 | INFO     | process IDs to be killed: [1723465] (in reverse order)
[2025-07-12 10:59:04] 2025-07-12 14:58:31,718 | WARNING  | found no corresponding commands to process id(s)
[2025-07-12 10:59:04] 2025-07-12 14:58:31,719 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-12 10:59:04] 2025-07-12 14:58:31,757 | INFO     | did not find any defunct processes belonging to 1723465
[2025-07-12 10:59:04] 2025-07-12 14:58:31,797 | INFO     | did not find any defunct processes belonging to 1723465
[2025-07-12 10:59:04] 2025-07-12 14:58:31,797 | INFO     | ready for new job
[2025-07-12 10:59:04] 2025-07-12 14:58:31,802 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-12 10:59:04] 2025-07-12 14:58:31,804 | INFO     | ***************************************
[2025-07-12 10:59:04] 2025-07-12 14:58:31,804 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-12 10:59:04] 2025-07-12 14:58:31,804 | INFO     | ***************************************
[2025-07-12 10:59:04] 2025-07-12 14:58:31,804 | INFO     | 
[2025-07-12 10:59:04] 2025-07-12 14:58:31,821 | INFO     | architecture information:
[2025-07-12 10:59:04] 2025-07-12 14:58:31,830 | INFO     | executing command: cat /etc/os-release
[2025-07-12 10:59:04] 2025-07-12 14:58:31,957 | INFO     | cat /etc/os-release:
[2025-07-12 10:59:04] NAME="CentOS Linux"
[2025-07-12 10:59:04] VERSION="7 (Core)"
[2025-07-12 10:59:04] ID="centos"
[2025-07-12 10:59:04] ID_LIKE="rhel fedora"
[2025-07-12 10:59:04] VERSION_ID="7"
[2025-07-12 10:59:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-12 10:59:04] ANSI_COLOR="0;31"
[2025-07-12 10:59:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-12 10:59:04] HOME_URL="https://www.centos.org/"
[2025-07-12 10:59:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-12 10:59:04] 
[2025-07-12 10:59:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-12 10:59:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-12 10:59:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-12 10:59:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-12 10:59:04] 
[2025-07-12 10:59:04] 2025-07-12 14:58:31,957 | INFO     | ***************************************
[2025-07-12 10:59:04] 2025-07-12 14:58:32,460 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-12 10:59:04] 2025-07-12 14:58:32,478 | INFO     | sufficient remaining disk space (76306972672 B)
[2025-07-12 10:59:04] 2025-07-12 14:58:32,478 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-12 10:59:04] 2025-07-12 14:58:32,479 | INFO     | current server update state: UPDATING_FINAL
[2025-07-12 10:59:04] 2025-07-12 14:58:32,479 | INFO     | update_server=False
[2025-07-12 10:59:04] 2025-07-12 14:58:32,479 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-12 10:59:04] 2025-07-12 14:58:32,479 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-12 10:59:04] 2025-07-12 14:58:32,843 | INFO     | all data control threads have been joined
[2025-07-12 10:59:04] 2025-07-12 14:58:33,099 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-12 10:59:04] 2025-07-12 14:58:33,099 | INFO     | aborting loop
[2025-07-12 10:59:04] 2025-07-12 14:58:33,351 | INFO     | all job control threads have been joined
[2025-07-12 10:59:04] 2025-07-12 14:58:33,485 | INFO     | [job] retrieve thread has finished
[2025-07-12 10:59:04] 2025-07-12 14:58:33,576 | INFO     | [payload] validate_pre thread has finished
[2025-07-12 10:59:04] 2025-07-12 14:58:33,640 | INFO     | [payload] failed_post thread has finished
[2025-07-12 10:59:04] 2025-07-12 14:58:33,722 | INFO     | all payload control threads have been joined
[2025-07-12 10:59:04] 2025-07-12 14:58:33,726 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-12 10:59:04] 2025-07-12 14:58:33,847 | INFO     | [payload] execute_payloads thread has finished
[2025-07-12 10:59:04] 2025-07-12 14:58:33,849 | INFO     | [data] control thread has finished
[2025-07-12 10:59:04] 2025-07-12 14:58:34,105 | INFO     | [job] job monitor thread has finished
[2025-07-12 10:59:04] 2025-07-12 14:58:34,124 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-12 10:59:04] 2025-07-12 14:58:34,150 | INFO     | [job] validate thread has finished
[2025-07-12 10:59:04] 2025-07-12 14:58:34,153 | INFO     | [job] create_data_payload thread has finished
[2025-07-12 10:59:04] 2025-07-12 14:58:34,361 | INFO     | [job] control thread has finished
[2025-07-12 10:59:04] 2025-07-12 14:58:34,486 | INFO     | [data] copytool_out thread has finished
[2025-07-12 10:59:04] 2025-07-12 14:58:34,492 | INFO     | [data] copytool_in thread has finished
[2025-07-12 10:59:04] 2025-07-12 14:58:34,694 | INFO     | [payload] validate_post thread has finished
[2025-07-12 10:59:04] 2025-07-12 14:58:34,729 | INFO     | [payload] control thread has finished
[2025-07-12 10:59:04] 2025-07-12 14:58:34,734 | INFO     | [job] queue monitor thread has finished
[2025-07-12 10:59:04] 2025-07-12 14:58:35,576 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-12 10:59:04] 2025-07-12 14:58:39,587 | INFO     | [data] queue_monitor thread has finished
[2025-07-12 10:59:04] 2025-07-12 14:58:40,141 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139661293561664)>', '<ExcThread(monitor, started 139660634343168)>']
[2025-07-12 10:59:04] 2025-07-12 14:58:45,166 | INFO     | all workflow threads have been joined
[2025-07-12 10:59:04] 2025-07-12 14:58:45,166 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-12 10:59:04] 2025-07-12 14:58:45,166 | INFO     | traces error code: 0
[2025-07-12 10:59:04] 2025-07-12 14:58:45,167 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-12 10:59:04] 2025-07-12 14:59:03,822 | INFO     | PID=1714496 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-12 10:59:04] 2025-07-12 14:59:03,823 | INFO     | .. there are 39 such processes running
[2025-07-12 10:59:04] 2025-07-12 14:59:03,823 | INFO     | found 0 job(s) in 20 queues
[2025-07-12 10:59:04] 2025-07-12 14:59:03,823 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-12 10:59:04] 2025-07-12 14:59:03,823 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-12 10:59:04] 2025-07-12 14:59:03,823 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-12 10:59:04] 2025-07-12 14:59:03,823 | CRITICAL | thread 'MainThread' is not alive
[2025-07-12 10:59:04] 2025-07-12 14:59:03,823 | INFO     | [monitor] control thread has ended
[2025-07-12 10:59:04] 2025-07-12 14:59:04,036 [wrapper] ==== pilot stdout END ====
[2025-07-12 10:59:04] 2025-07-12 14:59:04,039 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-12 10:59:04] 2025-07-12 14:59:04,042 [wrapper] pilotpid: 1714496
[2025-07-12 10:59:04] 2025-07-12 14:59:04,045 [wrapper] Pilot exit status: 0
[2025-07-12 10:59:04] 2025-07-12 14:59:04,101 [wrapper] pandaids: 6720536132
[2025-07-12 10:59:04] 2025-07-12 14:59:04,197 [wrapper] cleanup supervisor_pilot 3115252 1714497
[2025-07-12 10:59:04] 2025-07-12 14:59:04,204 [wrapper] Test setup, not cleaning
[2025-07-12 10:59:04] 2025-07-12 14:59:04,207 [wrapper] apfmon messages muted
[2025-07-12 10:59:04] 2025-07-12 14:59:04,210 [wrapper] ==== wrapper stdout END ====
[2025-07-12 10:59:04] 2025-07-12 14:59:04,213 [wrapper] ==== wrapper stderr END ====
[2025-07-12 10:59:04]  *** Error codes and diagnostics ***
[2025-07-12 10:59:04]     "exeErrorCode": 0,
[2025-07-12 10:59:04]     "exeErrorDiag": "",
[2025-07-12 10:59:04]     "pilotErrorCode": 0,
[2025-07-12 10:59:04]     "pilotErrorDiag": "",
[2025-07-12 10:59:04]  *** Listing of results directory ***
[2025-07-12 10:59:04] total 573256
[2025-07-12 10:59:04] -rw-r--r--. 1 boincer umatlas    530466 Jul  4 16:23 pilot3.tar.gz
[2025-07-12 10:59:04] -rw-r--r--. 1 boincer umatlas      5112 Jul  4 16:36 queuedata.json
[2025-07-12 10:59:04] -rwx------. 1 boincer umatlas     36292 Jul  4 16:37 runpilot2-wrapper.sh
[2025-07-12 10:59:04] -rw-r--r--. 1 boincer umatlas       100 Jul 12 00:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-12 10:59:04] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 12 00:38 run_atlas
[2025-07-12 10:59:04] -rw-r--r--. 1 boincer umatlas       105 Jul 12 00:38 job.xml
[2025-07-12 10:59:04] -rw-r--r--. 2 boincer umatlas 318467471 Jul 12 00:38 EVNT.45482038._000060.pool.root.1
[2025-07-12 10:59:04] -rw-r--r--. 2 boincer umatlas     15095 Jul 12 00:38 start_atlas.sh
[2025-07-12 10:59:04] drwxrwx--x. 2 boincer umatlas      4096 Jul 12 00:38 shared
[2025-07-12 10:59:04] -rw-r--r--. 2 boincer umatlas    542885 Jul 12 00:38 input.tar.gz
[2025-07-12 10:59:04] -rw-r--r--. 1 boincer umatlas         0 Jul 12 00:38 boinc_lockfile
[2025-07-12 10:59:04] -rw-r--r--. 1 boincer umatlas      2543 Jul 12 00:38 pandaJob.out
[2025-07-12 10:59:04] -rw-------. 1 boincer umatlas    976559 Jul 12 00:39 agis_schedconf.cvmfs.json
[2025-07-12 10:59:04] drwx------. 4 boincer umatlas      4096 Jul 12 00:39 pilot3
[2025-07-12 10:59:04] -rw-r--r--. 1 boincer umatlas      6656 Jul 12 10:55 init_data.xml
[2025-07-12 10:59:04] -rw-------. 1 boincer umatlas 258107178 Jul 12 10:57 HITS.45482040._001494.pool.root.1
[2025-07-12 10:59:04] -rw-r--r--. 1 boincer umatlas       531 Jul 12 10:57 boinc_task_state.xml
[2025-07-12 10:59:04] -rw-------. 1 boincer umatlas      1038 Jul 12 10:57 memory_monitor_summary.json
[2025-07-12 10:59:04] -rw-------. 1 boincer umatlas   1588641 Jul 12 10:58 agis_ddmendpoints.agis.ALL.json
[2025-07-12 10:59:04] -rw-------. 1 boincer umatlas    606046 Jul 12 10:58 log.45482040._001494.job.log.tgz.1
[2025-07-12 10:59:04] -rw-------. 1 boincer umatlas        95 Jul 12 10:58 pilot_heartbeat.json
[2025-07-12 10:59:04] -rw-------. 1 boincer umatlas      7816 Jul 12 10:58 heartbeat.json
[2025-07-12 10:59:04] -rw-r--r--. 1 boincer umatlas        28 Jul 12 10:59 wrapper_checkpoint.txt
[2025-07-12 10:59:04] -rw-------. 1 boincer umatlas       893 Jul 12 10:59 pilotlog.txt
[2025-07-12 10:59:04] -rw-------. 1 boincer umatlas   2680572 Jul 12 10:59 log.45482040._001494.job.log.1
[2025-07-12 10:59:04] -rw-r--r--. 1 boincer umatlas      8192 Jul 12 10:59 boinc_mmap_file
[2025-07-12 10:59:04] -rw-------. 1 boincer umatlas       357 Jul 12 10:59 output.list
[2025-07-12 10:59:04] -rw-r--r--. 1 boincer umatlas       620 Jul 12 10:59 runtime_log
[2025-07-12 10:59:04] -rw-------. 1 boincer umatlas   3307520 Jul 12 10:59 result.tar.gz
[2025-07-12 10:59:04] -rw-r--r--. 1 boincer umatlas      8648 Jul 12 10:59 runtime_log.err
[2025-07-12 10:59:04] -rw-------. 1 boincer umatlas       655 Jul 12 10:59 38HODmjK2r7n9Rq4apOajLDm4fhM0noT9bVof3QYDmQynKDmWzQxcm.diag
[2025-07-12 10:59:04] -rw-r--r--. 1 boincer umatlas     21315 Jul 12 10:59 stderr.txt
[2025-07-12 10:59:04] HITS file was successfully produced:
[2025-07-12 10:59:04] -rw-------. 1 boincer umatlas 258107178 Jul 12 10:57 shared/HITS.pool.root.1
[2025-07-12 10:59:04]  *** Contents of shared directory: ***
[2025-07-12 10:59:04] total 566848
[2025-07-12 10:59:04] -rw-r--r--. 2 boincer umatlas 318467471 Jul 12 00:38 ATLAS.root_0
[2025-07-12 10:59:04] -rw-r--r--. 2 boincer umatlas     15095 Jul 12 00:38 start_atlas.sh
[2025-07-12 10:59:04] -rw-r--r--. 2 boincer umatlas    542885 Jul 12 00:38 input.tar.gz
[2025-07-12 10:59:04] -rw-------. 1 boincer umatlas 258107178 Jul 12 10:57 HITS.pool.root.1
[2025-07-12 10:59:04] -rw-------. 1 boincer umatlas   3307520 Jul 12 10:59 result.tar.gz
10:59:05 (1706741): run_atlas exited; CPU time 69264.182639
10:59:05 (1706741): called boinc_finish(0)

</stderr_txt>
]]>

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