Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:28:53 (3049568): wrapper (7.7.26015): starting
05:28:53 (3049568): wrapper: running run_atlas (--nthreads 12)
[2025-07-07 05:28:53] Arguments: --nthreads 12
[2025-07-07 05:28:53] Threads: 12
[2025-07-07 05:28:53] Checking for CVMFS
[2025-07-07 05:28:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-07 05:28:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-07 05:28:53] Running cvmfs_config stat atlas.cern.ch
[2025-07-07 05:28:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-07 05:28:54] 2.11.5.0 6658 8342 246112 148039 1 518 44629320 45568001 13418 130560 0 68539392 99.746 44853560 25820 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-07-07 05:28:54] CVMFS is ok
[2025-07-07 05:28:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-07 05:28:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-07 05:28:54] Further information can be found at the LHC@home message board.
[2025-07-07 05:28:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-07 05:28:54] Checking for apptainer binary...
[2025-07-07 05:28:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-07 05:28:54] Running /usr/bin/apptainer --version
[2025-07-07 05:28:54] apptainer version 1.4.1-1.el9
[2025-07-07 05:28:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-07 05:28:55] wns0061.triumf.lcg
[2025-07-07 05:28:55] apptainer works
[2025-07-07 05:28:55] Set ATHENA_PROC_NUMBER=12
[2025-07-07 05:28:55] Set ATHENA_CORE_NUMBER=12
[2025-07-07 05:28:55] Starting ATLAS job with PandaID=6722823375
[2025-07-07 05:28:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-07 05:33:23]  *** The last 200 lines of the pilot log: ***
[2025-07-07 05:33:23] 2025-07-07 12:32:50,554 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-07 05:33:23] 2025-07-07 12:32:50,554 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-07 05:33:23] 2025-07-07 12:32:50,555 | WARNING  | wrong length of table data, x=[1751891418.0], y=[1108.0] (must be same and length>=4)
[2025-07-07 05:33:23] 2025-07-07 12:32:50,555 | INFO     | could have reported an average CPU frequency of 2684 MHz (4 samples)
[2025-07-07 05:33:23] 2025-07-07 12:32:50,555 | INFO     | ..............................
[2025-07-07 05:33:23] 2025-07-07 12:32:50,555 | INFO     | . Timing measurements:
[2025-07-07 05:33:23] 2025-07-07 12:32:50,555 | INFO     | . get job = 0 s
[2025-07-07 05:33:23] 2025-07-07 12:32:50,555 | INFO     | . initial setup = 3 s
[2025-07-07 05:33:23] 2025-07-07 12:32:50,555 | INFO     | . payload setup = 13 s
[2025-07-07 05:33:23] 2025-07-07 12:32:50,555 | INFO     | . stage-in = 0 s
[2025-07-07 05:33:23] 2025-07-07 12:32:50,555 | INFO     | . payload execution = 42 s
[2025-07-07 05:33:23] 2025-07-07 12:32:50,555 | INFO     | . stage-out = 0 s
[2025-07-07 05:33:23] 2025-07-07 12:32:50,556 | INFO     | . log creation = 0 s
[2025-07-07 05:33:23] 2025-07-07 12:32:50,556 | INFO     | ..............................
[2025-07-07 05:33:23] 2025-07-07 12:32:50,556 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-07 05:33:23] 2025-07-07 12:32:50,556 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6722823375/pilotlog.txt
[2025-07-07 05:33:23] 2025-07-07 12:32:50,615 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-07 05:33:23] - Log from pilotlog.txt -
[2025-07-07 05:33:23] 2025-07-07 12:32:50,551 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6722823375/memory_monitor_summary.json (trf name=prmon)
[2025-07-07 05:33:23] 2025-07-07 12:32:50,553 | INFO     | extracted standard info from prmon json
[2025-07-07 05:33:23] 2025-07-07 12:32:50,553 | INFO     | extracted standard memory fields from prmon json
[2025-07-07 05:33:23] 2025-07-07 12:32:50,553 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-07 05:33:23] 2025-07-07 12:32:50,554 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-07 05:33:23] 2025-07-07 12:32:50,554 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-07 05:33:23] 2025-07-07 12:32:50,555 | WARNING  | wrong length of table data, x=[1751891418.0], y=[1108.0] (must be same and length>=4)
[2025-07-07 05:33:23] 2025-07-07 12:32:50,555 | INFO     | could have reported an average CPU frequency of 2684 MHz (4 samples)
[2025-07-07 05:33:23] 2025-07-07 12:32:50,555 | INFO     | ..............................
[2025-07-07 05:33:23] 2025-07-07 12:32:50,555 | INFO     | . Timing measurements:
[2025-07-07 05:33:23] 2025-07-07 12:32:50,555 | INFO     | . get job = 0 s
[2025-07-07 05:33:23] 2025-07-07 12:32:50,555 | INFO     | . initial setup = 3 s
[2025-07-07 05:33:23] 2025-07-07 12:32:50,555 | INFO     | . payload setup = 13 s
[2025-07-07 05:33:23] 2025-07-07 12:32:50,555 | INFO     | . stage-in = 0 s
[2025-07-07 05:33:23] 2025-07-07 12:32:50,555 | INFO     | . payload execution = 42 s
[2025-07-07 05:33:23] 2025-07-07 12:32:50,555 | INFO     | . stage-out = 0 s
[2025-07-07 05:33:23] 2025-07-07 12:32:50,556 | INFO     | . log creation = 0 s
[2025-07-07 05:33:23] 2025-07-07 12:32:50,556 | INFO     | ..............................
[2025-07-07 05:33:23] 2025-07-07 12:32:50,556 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-07 05:33:23] 2025-07-07 12:32:50,556 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6722823375/pilotlog.txt
[2025-07-07 05:33:23] 2025-07-07 12:32:50,616 | WARNING  | 
[2025-07-07 05:33:23] [begin log extracts]
[2025-07-07 05:33:23] - Log from pilotlog.txt -
[2025-07-07 05:33:23] 2025-07-07 12:32:50,551 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6722823375/memory_monitor_summary.json (trf name=prmon)
[2025-07-07 05:33:23] 2025-07-07 12:32:50,553 | INFO     | extracted standard info from prmon json
[2025-07-07 05:33:23] 2025-07-07 12:32:50,553 | INFO     | extracted standard memory fields from prmon json
[2025-07-07 05:33:23] 2025-07-07 12:32:50,553 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-07 05:33:23] 2025-07-07 12:32:50,554 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-07 05:33:23] 2025-07-07 12:32:50,554 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-07 05:33:23] 2025-07-07 12:32:50,555 | WARNING  | wrong length of table data, x=[1751891418.0], y=[1108.0] (must be same and length>=4)
[2025-07-07 05:33:23] 2025-07-07 12:32:50,555 | INFO     | could have reported an average CPU frequency of 2684 MHz (4 samples)
[2025-07-07 05:33:23] 2025-07-07 12:32:50,555 | INFO     | ..............................
[2025-07-07 05:33:23] 2025-07-07 12:32:50,555 | INFO     | . Timing measurements:
[2025-07-07 05:33:23] 2025-07-07 12:32:50,555 | INFO     | . get job = 0 s
[2025-07-07 05:33:23] 2025-07-07 12:32:50,555 | INFO     | . initial setup = 3 s
[2025-07-07 05:33:23] 2025-07-07 12:32:50,555 | INFO     | . payload setup = 13 s
[2025-07-07 05:33:23] 2025-07-07 12:32:50,555 | INFO     | . stage-in = 0 s
[2025-07-07 05:33:23] 2025-07-07 12:32:50,555 | INFO     | . payload execution = 42 s
[2025-07-07 05:33:23] 2025-07-07 12:32:50,555 | INFO     | . stage-out = 0 s
[2025-07-07 05:33:23] 2025-07-07 12:32:50,556 | INFO     | . log creation = 0 s
[2025-07-07 05:33:23] 2025-07-07 12:32:50,556 | INFO     | ..............................
[2025-07-07 05:33:23] 2025-07-07 12:32:50,556 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-07 05:33:23] 2025-07-07 12:32:50,556 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6722823375/pilotlog.txt
[2025-07-07 05:33:23] [end log extracts]
[2025-07-07 05:33:23] 2025-07-07 12:32:50,616 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-07 05:33:23] 2025-07-07 12:32:50,617 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-07 05:33:23] 2025-07-07 12:32:51,306 | INFO     | 
[2025-07-07 05:33:23] 2025-07-07 12:32:51,306 | INFO     | job summary report
[2025-07-07 05:33:23] 2025-07-07 12:32:51,306 | INFO     | --------------------------------------------------
[2025-07-07 05:33:23] 2025-07-07 12:32:51,306 | INFO     | PanDA job id: 6722823375
[2025-07-07 05:33:23] 2025-07-07 12:32:51,306 | INFO     | task id: 45482062
[2025-07-07 05:33:23] 2025-07-07 12:32:51,306 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-07 05:30:35,326 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-07 05:33:23] 2025-07-07 12:32:51,306 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-07 05:33:23] 2025-07-07 12:32:51,306 | INFO     | pilot state: failed 
[2025-07-07 05:33:23] 2025-07-07 12:32:51,307 | INFO     | transexitcode: 65
[2025-07-07 05:33:23] 2025-07-07 12:32:51,307 | INFO     | exeerrorcode: 65
[2025-07-07 05:33:23] 2025-07-07 12:32:51,307 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-07 05:33:23] 2025-07-07 12:32:51,307 | INFO     | exitcode: 65
[2025-07-07 05:33:23] 2025-07-07 12:32:51,307 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-07 05:33:23] 2025-07-07 12:32:51,307 | INFO     | cpuconsumptiontime: 16 s
[2025-07-07 05:33:23] 2025-07-07 12:32:51,307 | INFO     | nevents: 0
[2025-07-07 05:33:23] 2025-07-07 12:32:51,307 | INFO     | neventsw: 0
[2025-07-07 05:33:23] 2025-07-07 12:32:51,307 | INFO     | pid: 3059519
[2025-07-07 05:33:23] 2025-07-07 12:32:51,307 | INFO     | pgrp: 3059519
[2025-07-07 05:33:23] 2025-07-07 12:32:51,307 | INFO     | corecount: 12
[2025-07-07 05:33:23] 2025-07-07 12:32:51,307 | INFO     | event service: False
[2025-07-07 05:33:23] 2025-07-07 12:32:51,307 | INFO     | sizes: {0: 2366500, 9: 2366762, 11: 2366790, 59: 2394338, 60: 2394338, 186: 2394504}
[2025-07-07 05:33:23] 2025-07-07 12:32:51,307 | INFO     | --------------------------------------------------
[2025-07-07 05:33:23] 2025-07-07 12:32:51,307 | INFO     | 
[2025-07-07 05:33:23] 2025-07-07 12:32:51,307 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-07 05:33:23] 2025-07-07 12:32:51,323 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-07 05:33:23] 2025-07-07 12:32:51,323 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-07 05:33:23] 2025-07-07 12:32:51,323 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-07 05:33:23] 2025-07-07 12:32:51,323 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-07 05:33:23] 2025-07-07 12:32:51,323 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-07 05:33:23] 2025-07-07 12:32:51,323 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-07 05:33:23] 2025-07-07 12:32:51,323 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-07 05:33:23] 2025-07-07 12:32:51,323 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-07 05:33:23] 2025-07-07 12:32:51,323 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-07 05:33:23] 2025-07-07 12:32:51,323 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-07 05:33:23] 2025-07-07 12:32:51,323 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-07 05:33:23] 2025-07-07 12:32:51,323 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-07 05:33:23] 2025-07-07 12:32:51,323 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-07 05:33:23] 2025-07-07 12:32:51,323 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-07 05:33:23] 2025-07-07 12:32:51,324 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-07 05:33:23] 2025-07-07 12:32:51,324 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-07 05:33:23] 2025-07-07 12:32:51,324 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-07 05:33:23] 2025-07-07 12:32:51,324 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-07 05:33:23] 2025-07-07 12:32:51,324 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-07 05:33:23] 2025-07-07 12:32:51,324 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-07 05:33:23] 2025-07-07 12:32:51,324 | INFO     | job 6722823375 has completed (purged errors)
[2025-07-07 05:33:23] 2025-07-07 12:32:51,324 | INFO     | overall cleanup function is called
[2025-07-07 05:33:23] 2025-07-07 12:32:52,330 | INFO     | --- collectZombieJob: --- 10, [3059519]
[2025-07-07 05:33:23] 2025-07-07 12:32:52,330 | INFO     | zombie collector waiting for pid 3059519
[2025-07-07 05:33:23] 2025-07-07 12:32:52,331 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-07 05:33:23] 2025-07-07 12:32:52,331 | INFO     | collected zombie processes
[2025-07-07 05:33:23] 2025-07-07 12:32:52,331 | INFO     | will attempt to kill all subprocesses of pid=3059519
[2025-07-07 05:33:23] 2025-07-07 12:32:52,963 | INFO     | process IDs to be killed: [3059519] (in reverse order)
[2025-07-07 05:33:23] 2025-07-07 12:32:53,032 | WARNING  | found no corresponding commands to process id(s)
[2025-07-07 05:33:23] 2025-07-07 12:32:53,032 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-07 05:33:23] 2025-07-07 12:32:53,083 | INFO     | did not find any defunct processes belonging to 3059519
[2025-07-07 05:33:23] 2025-07-07 12:32:53,125 | INFO     | did not find any defunct processes belonging to 3059519
[2025-07-07 05:33:23] 2025-07-07 12:32:53,125 | INFO     | ready for new job
[2025-07-07 05:33:23] 2025-07-07 12:32:53,126 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-07 05:33:23] 2025-07-07 12:32:53,127 | INFO     | ***************************************
[2025-07-07 05:33:23] 2025-07-07 12:32:53,127 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-07 05:33:23] 2025-07-07 12:32:53,127 | INFO     | ***************************************
[2025-07-07 05:33:23] 2025-07-07 12:32:53,127 | INFO     | 
[2025-07-07 05:33:23] 2025-07-07 12:32:53,155 | INFO     | architecture information:
[2025-07-07 05:33:23] 2025-07-07 12:32:53,166 | INFO     | executing command: cat /etc/os-release
[2025-07-07 05:33:23] 2025-07-07 12:32:53,198 | INFO     | cat /etc/os-release:
[2025-07-07 05:33:23] NAME="CentOS Linux"
[2025-07-07 05:33:23] VERSION="7 (Core)"
[2025-07-07 05:33:23] ID="centos"
[2025-07-07 05:33:23] ID_LIKE="rhel fedora"
[2025-07-07 05:33:23] VERSION_ID="7"
[2025-07-07 05:33:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-07 05:33:23] ANSI_COLOR="0;31"
[2025-07-07 05:33:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-07 05:33:23] HOME_URL="https://www.centos.org/"
[2025-07-07 05:33:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-07 05:33:23] 
[2025-07-07 05:33:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-07 05:33:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-07 05:33:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-07 05:33:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-07 05:33:23] 
[2025-07-07 05:33:23] 2025-07-07 12:32:53,198 | INFO     | ***************************************
[2025-07-07 05:33:23] 2025-07-07 12:32:53,702 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-07 05:33:23] 2025-07-07 12:32:53,790 | INFO     | sufficient remaining disk space (1736770060288 B)
[2025-07-07 05:33:23] 2025-07-07 12:32:53,790 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-07 05:33:23] 2025-07-07 12:32:53,790 | INFO     | current server update state: UPDATING_FINAL
[2025-07-07 05:33:23] 2025-07-07 12:32:53,790 | INFO     | update_server=False
[2025-07-07 05:33:23] 2025-07-07 12:32:53,790 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-07 05:33:23] 2025-07-07 12:32:53,985 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-07 05:33:23] 2025-07-07 12:32:53,986 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-07 05:33:23] 2025-07-07 12:32:53,986 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-07 05:33:23] 2025-07-07 12:32:53,986 | INFO     | will abort loop
[2025-07-07 05:33:23] 2025-07-07 12:32:54,771 | INFO     | all data control threads have been joined
[2025-07-07 05:33:23] 2025-07-07 12:32:54,796 | INFO     | [job] retrieve thread has finished
[2025-07-07 05:33:23] 2025-07-07 12:32:54,991 | INFO     | [job] job monitor thread has finished
[2025-07-07 05:33:23] 2025-07-07 12:32:55,049 | INFO     | all payload control threads have been joined
[2025-07-07 05:33:23] 2025-07-07 12:32:55,054 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-07 05:33:23] 2025-07-07 12:32:55,166 | INFO     | [job] validate thread has finished
[2025-07-07 05:33:23] 2025-07-07 12:32:55,226 | INFO     | [job] create_data_payload thread has finished
[2025-07-07 05:33:23] 2025-07-07 12:32:55,231 | INFO     | [payload] failed_post thread has finished
[2025-07-07 05:33:23] 2025-07-07 12:32:55,293 | INFO     | [payload] validate_pre thread has finished
[2025-07-07 05:33:23] 2025-07-07 12:32:55,338 | INFO     | [data] copytool_in thread has finished
[2025-07-07 05:33:23] 2025-07-07 12:32:55,472 | INFO     | all job control threads have been joined
[2025-07-07 05:33:23] 2025-07-07 12:32:55,777 | INFO     | [data] control thread has finished
[2025-07-07 05:33:23] 2025-07-07 12:32:55,899 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-07 05:33:23] 2025-07-07 12:32:55,932 | INFO     | [payload] execute_payloads thread has finished
[2025-07-07 05:33:23] 2025-07-07 12:32:55,947 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-07 05:33:23] 2025-07-07 12:32:56,034 | INFO     | [payload] validate_post thread has finished
[2025-07-07 05:33:23] 2025-07-07 12:32:56,056 | INFO     | [payload] control thread has finished
[2025-07-07 05:33:23] 2025-07-07 12:32:56,478 | INFO     | [job] control thread has finished
[2025-07-07 05:33:23] 2025-07-07 12:32:56,905 | INFO     | [job] queue monitor thread has finished
[2025-07-07 05:33:23] 2025-07-07 12:32:57,061 | INFO     | [data] copytool_out thread has finished
[2025-07-07 05:33:23] 2025-07-07 12:32:57,218 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-07 05:33:23] 2025-07-07 12:33:01,228 | INFO     | [data] queue_monitor thread has finished
[2025-07-07 05:33:23] 2025-07-07 12:33:02,057 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140649783953216)>', '<ExcThread(monitor, started 140649456174848)>']
[2025-07-07 05:33:23] 2025-07-07 12:33:07,082 | INFO     | all workflow threads have been joined
[2025-07-07 05:33:23] 2025-07-07 12:33:07,083 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-07 05:33:23] 2025-07-07 12:33:07,083 | INFO     | traces error code: 0
[2025-07-07 05:33:23] 2025-07-07 12:33:07,083 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-07 05:33:23] 2025-07-07 12:33:23,152 | INFO     | PID=3053166 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-07 05:33:23] 2025-07-07 12:33:23,153 | INFO     | .. there are 21 such processes running
[2025-07-07 05:33:23] 2025-07-07 12:33:23,154 | INFO     | found 0 job(s) in 20 queues
[2025-07-07 05:33:23] 2025-07-07 12:33:23,155 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-07 05:33:23] 2025-07-07 12:33:23,155 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-07 05:33:23] 2025-07-07 12:33:23,155 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-07 05:33:23] 2025-07-07 12:33:23,155 | INFO     | [monitor] control thread has ended
[2025-07-07 05:33:23] 2025-07-07 12:33:23,275 [wrapper] ==== pilot stdout END ====
[2025-07-07 05:33:23] 2025-07-07 12:33:23,290 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-07 05:33:23] 2025-07-07 12:33:23,306 [wrapper] pilotpid: 3053166
[2025-07-07 05:33:23] 2025-07-07 12:33:23,335 [wrapper] Pilot exit status: 0
[2025-07-07 05:33:23] 2025-07-07 12:33:23,428 [wrapper] pandaids: 6722823375
[2025-07-07 05:33:23] 2025-07-07 12:33:23,571 [wrapper] cleanup supervisor_pilot 3053172 3053167
[2025-07-07 05:33:23] 2025-07-07 12:33:23,574 [wrapper] Test setup, not cleaning
[2025-07-07 05:33:23] 2025-07-07 12:33:23,575 [wrapper] apfmon messages muted
[2025-07-07 05:33:23] 2025-07-07 12:33:23,577 [wrapper] ==== wrapper stdout END ====
[2025-07-07 05:33:23] 2025-07-07 12:33:23,579 [wrapper] ==== wrapper stderr END ====
[2025-07-07 05:33:23]  *** Error codes and diagnostics ***
[2025-07-07 05:33:23]     "exeErrorCode": 65,
[2025-07-07 05:33:23]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-07 05:33:23]     "pilotErrorCode": 1305,
[2025-07-07 05:33:23]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-07 05:33:23]  *** Listing of results directory ***
[2025-07-07 05:33:23] total 316672
[2025-07-07 05:33:23] -rw-r--r--. 1 boinc boinc    530466 Jul  7 03:18 pilot3.tar.gz
[2025-07-07 05:33:23] -rwx------. 1 boinc boinc     36292 Jul  7 03:26 runpilot2-wrapper.sh
[2025-07-07 05:33:23] -rw-r--r--. 1 boinc boinc      5112 Jul  7 03:26 queuedata.json
[2025-07-07 05:33:23] -rw-r--r--. 1 boinc boinc       100 Jul  7 05:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-07 05:33:23] -rwxr-xr-x. 1 boinc boinc      7986 Jul  7 05:28 run_atlas
[2025-07-07 05:33:23] -rw-r--r--. 1 boinc boinc       105 Jul  7 05:28 job.xml
[2025-07-07 05:33:23] -rw-r--r--. 1 boinc boinc      6598 Jul  7 05:28 init_data.xml
[2025-07-07 05:33:23] -rw-r--r--. 2 boinc boinc 320222182 Jul  7 05:28 EVNT.45482060._000213.pool.root.1
[2025-07-07 05:33:23] -rw-r--r--. 2 boinc boinc     15095 Jul  7 05:28 start_atlas.sh
[2025-07-07 05:33:23] drwxrwx--x. 2 boinc boinc      4096 Jul  7 05:28 shared
[2025-07-07 05:33:23] -rw-r--r--. 2 boinc boinc    542887 Jul  7 05:28 input.tar.gz
[2025-07-07 05:33:23] -rw-r--r--. 1 boinc boinc         0 Jul  7 05:28 boinc_lockfile
[2025-07-07 05:33:23] -rw-r--r--. 1 boinc boinc      2532 Jul  7 05:28 pandaJob.out
[2025-07-07 05:33:23] -rw-------. 1 boinc boinc    970740 Jul  7 05:29 agis_schedconf.cvmfs.json
[2025-07-07 05:33:23] -rw-------. 1 boinc boinc   1573983 Jul  7 05:29 agis_ddmendpoints.agis.ALL.json
[2025-07-07 05:33:23] drwx------. 4 boinc boinc      4096 Jul  7 05:29 pilot3
[2025-07-07 05:33:23] -rw-r--r--. 1 boinc boinc       522 Jul  7 05:30 boinc_task_state.xml
[2025-07-07 05:33:23] -rw-------. 1 boinc boinc       953 Jul  7 05:30 memory_monitor_summary.json
[2025-07-07 05:33:23] -rw-------. 1 boinc boinc     21067 Jul  7 05:30 log.45482062._016875.job.log.tgz.1
[2025-07-07 05:33:23] -rw-------. 1 boinc boinc      8393 Jul  7 05:32 heartbeat.json
[2025-07-07 05:33:23] -rw-r--r--. 1 boinc boinc      8192 Jul  7 05:33 boinc_mmap_file
[2025-07-07 05:33:23] -rw-------. 1 boinc boinc        95 Jul  7 05:33 pilot_heartbeat.json
[2025-07-07 05:33:23] -rw-------. 1 boinc boinc       823 Jul  7 05:33 pilotlog.txt
[2025-07-07 05:33:23] -rw-------. 1 boinc boinc     79099 Jul  7 05:33 log.45482062._016875.job.log.1
[2025-07-07 05:33:23] -rw-r--r--. 1 boinc boinc        22 Jul  7 05:33 wrapper_checkpoint.txt
[2025-07-07 05:33:23] -rw-------. 1 boinc boinc       188 Jul  7 05:33 output.list
[2025-07-07 05:33:23] -rw-r--r--. 1 boinc boinc       620 Jul  7 05:33 runtime_log
[2025-07-07 05:33:23] -rw-------. 1 boinc boinc    122880 Jul  7 05:33 result.tar.gz
[2025-07-07 05:33:23] -rw-r--r--. 1 boinc boinc      8485 Jul  7 05:33 runtime_log.err
[2025-07-07 05:33:23] -rw-------. 1 boinc boinc       644 Jul  7 05:33 8zULDmTEys7n9Rq4apOajLDm4fhM0noT9bVof3QYDmUPsKDmmvlDwm.diag
[2025-07-07 05:33:23] -rw-r--r--. 1 boinc boinc     21798 Jul  7 05:33 stderr.txt
[2025-07-07 05:33:23] No HITS result produced
[2025-07-07 05:33:23]  *** Contents of shared directory: ***
[2025-07-07 05:33:23] total 313388
[2025-07-07 05:33:23] -rw-r--r--. 2 boinc boinc 320222182 Jul  7 05:28 ATLAS.root_0
[2025-07-07 05:33:23] -rw-r--r--. 2 boinc boinc     15095 Jul  7 05:28 start_atlas.sh
[2025-07-07 05:33:23] -rw-r--r--. 2 boinc boinc    542887 Jul  7 05:28 input.tar.gz
[2025-07-07 05:33:23] -rw-------. 1 boinc boinc    122880 Jul  7 05:33 result.tar.gz
05:33:25 (3049568): run_atlas exited; CPU time 23.756640
05:33:25 (3049568): called boinc_finish(0)

</stderr_txt>
]]>

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