Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<message>
process exited with code 195 (0xc3, -61)</message>
<stderr_txt>
04:08:58 (810272): wrapper (7.7.26015): starting
04:08:58 (810272): wrapper: running run_atlas (--nthreads 4)
[2025-07-10 04:08:58] Arguments: --nthreads 4
[2025-07-10 04:08:58] Threads: 4
[2025-07-10 04:08:58] Checking for CVMFS
[2025-07-10 04:08:58] No cvmfs_config command found, will try listing directly
[2025-07-10 04:08:58] CVMFS is ok
[2025-07-10 04:08:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-10 04:08:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-10 04:08:58] Further information can be found at the LHC@home message board.
[2025-07-10 04:08:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-10 04:08:58] Checking for apptainer binary...
[2025-07-10 04:08:58] which: no apptainer in ((null))
[2025-07-10 04:08:58] apptainer is not installed, using version from CVMFS
[2025-07-10 04:08:58] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-10 04:08:58] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot48/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut05.grid.cesnet.cz
[2025-07-10 04:08:58] apptainer works
[2025-07-10 04:08:58] Set ATHENA_PROC_NUMBER=4
[2025-07-10 04:08:58] Set ATHENA_CORE_NUMBER=4
[2025-07-10 04:08:59] Starting ATLAS job with PandaID=6721339277
[2025-07-10 04:08:59] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot48/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:42:27 (1581843): wrapper (7.7.26015): starting
00:42:27 (1581843): wrapper: running run_atlas (--nthreads 4)
[2025-07-11 00:42:27] Arguments: --nthreads 4
[2025-07-11 00:42:27] Threads: 4
[2025-07-11 00:42:27] This job has been restarted, cleaning up previous attempt
[2025-07-11 00:42:27] Checking for CVMFS
[2025-07-11 00:42:27] No cvmfs_config command found, will try listing directly
[2025-07-11 00:42:27] CVMFS is ok
[2025-07-11 00:42:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-11 00:42:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-11 00:42:27] Further information can be found at the LHC@home message board.
[2025-07-11 00:42:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-11 00:42:27] Checking for apptainer binary...
[2025-07-11 00:42:27] which: no apptainer in ((null))
[2025-07-11 00:42:27] apptainer is not installed, using version from CVMFS
[2025-07-11 00:42:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-11 00:42:27] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot48/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut05.grid.cesnet.cz
[2025-07-11 00:42:27] apptainer works
[2025-07-11 00:42:27] Set ATHENA_PROC_NUMBER=4
[2025-07-11 00:42:27] Set ATHENA_CORE_NUMBER=4
[2025-07-11 00:42:27] Starting ATLAS job with PandaID=6721339277
[2025-07-11 00:42:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot48/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-11 00:45:36] Job failed
[2025-07-11 00:45:36] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot48/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-07-11 00:45:36] ++ pwd
[2025-07-11 00:45:36] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot48/slots/0/
[2025-07-11 00:45:36] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot48/slots/0/
[2025-07-11 00:45:36] + mv ATLAS.root_0 EVNT.45482146._000573.pool.root.1
[2025-07-11 00:45:36] mv: 'ATLAS.root_0' and 'EVNT.45482146._000573.pool.root.1' are the same file
[2025-07-11 00:45:36] + tar --strip-components=5 -xvf input.tar.gz
[2025-07-11 00:45:36] + umask 077
[2025-07-11 00:45:36] ++ date +%s
[2025-07-11 00:45:36] + ACCOUNTING_STARTTIME=1752187347
[2025-07-11 00:45:36] + echo 'Detecting resource accounting method available for the job.'
[2025-07-11 00:45:36] Detecting resource accounting method available for the job.
[2025-07-11 00:45:36] + JOB_ACCOUNTING=
[2025-07-11 00:45:36] + command -v arc-job-cgroup
[2025-07-11 00:45:36] + '[' -z '' ']'
[2025-07-11 00:45:36] + GNU_TIME=/usr/bin/time
[2025-07-11 00:45:36] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-07-11 00:45:36] Looking for /usr/bin/time tool for accounting measurements
[2025-07-11 00:45:36] + '[' '!' -z /usr/bin/time ']'
[2025-07-11 00:45:36] + /usr/bin/time --version
[2025-07-11 00:45:36] + echo 'GNU time found and will be used for job accounting.'
[2025-07-11 00:45:36] GNU time found and will be used for job accounting.
[2025-07-11 00:45:36] + JOB_ACCOUNTING=gnutime
[2025-07-11 00:45:36] + '[' -z gnutime ']'
[2025-07-11 00:45:36] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-07-11 00:45:36] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-07-11 00:45:36] + export GTAG=http://aipanda404.cern.ch/data/jobs/2025-07-07/BOINC_MCORE/6721339277.out
[2025-07-11 00:45:36] + GTAG=http://aipanda404.cern.ch/data/jobs/2025-07-07/BOINC_MCORE/6721339277.out
[2025-07-11 00:45:36] + export PILOT_NOKILL=YES
[2025-07-11 00:45:36] + PILOT_NOKILL=YES
[2025-07-11 00:45:36] + export GRID_GLOBAL_JOBID=QWEMDmUaus7n9Rq4apOajLDm4fhM0noT9bVof3QYDmxwrKDmKD7mUm
[2025-07-11 00:45:36] + GRID_GLOBAL_JOBID=QWEMDmUaus7n9Rq4apOajLDm4fhM0noT9bVof3QYDmxwrKDmKD7mUm
[2025-07-11 00:45:36] + export GRID_GLOBAL_JOBURL=https://arc-boinc-03.cern.ch:443/arex/QWEMDmUaus7n9Rq4apOajLDm4fhM0noT9bVof3QYDmxwrKDmKD7mUm
[2025-07-11 00:45:36] + GRID_GLOBAL_JOBURL=https://arc-boinc-03.cern.ch:443/arex/QWEMDmUaus7n9Rq4apOajLDm4fhM0noT9bVof3QYDmxwrKDmKD7mUm
[2025-07-11 00:45:36] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-07-11 00:45:36] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-07-11 00:45:36] + export GRID_GLOBAL_JOBHOST=arc-boinc-03.cern.ch
[2025-07-11 00:45:36] + GRID_GLOBAL_JOBHOST=arc-boinc-03.cern.ch
[2025-07-11 00:45:36] ++ pwd
[2025-07-11 00:45:36] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot48/slots/0
[2025-07-11 00:45:36] + RUNTIME_JOB_STDIN=/dev/null
[2025-07-11 00:45:36] ++ pwd
[2025-07-11 00:45:36] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot48/slots/0/log.45482148._014379.job.log.1
[2025-07-11 00:45:36] ++ pwd
[2025-07-11 00:45:36] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot48/slots/0/log.45482148._014379.job.log.1
[2025-07-11 00:45:36] ++ pwd
[2025-07-11 00:45:36] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot48/slots/0.diag
[2025-07-11 00:45:36] + '[' '!' -z '' ']'
[2025-07-11 00:45:36] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-07-11 00:45:36] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-07-11 00:45:36] + RUNTIME_FRONTEND_SEES_NODE=
[2025-07-11 00:45:36] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-07-11 00:45:36] + '[' '!' -z '' ']'
[2025-07-11 00:45:36] + '[' -z yes ']'
[2025-07-11 00:45:36] ++ pwd
[2025-07-11 00:45:36] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot48/slots/0/QWEMDmUaus7n9Rq4apOajLDm4fhM0noT9bVof3QYDmxwrKDmKD7mUm.diag
[2025-07-11 00:45:36] + runtimeenvironments=
[2025-07-11 00:45:36] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-07-11 00:45:36] + RTE_function_0 1
[2025-07-11 00:45:36] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-07-11 00:45:36] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-07-11 00:45:36] + export BOINC_APP=ATLAS
[2025-07-11 00:45:36] + BOINC_APP=ATLAS
[2025-07-11 00:45:36] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-07-11 00:45:36] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-07-11 00:45:36] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-07-11 00:45:36] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-07-11 00:45:36] + '[' -z 1 ']'
[2025-07-11 00:45:36] + '[' 1 == 1 ']'
[2025-07-11 00:45:36] + shift
[2025-07-11 00:45:36] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot48/slots/0/
[2025-07-11 00:45:36] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot48/slots/0/
[2025-07-11 00:45:36] + '[' 0 -ne 0 ']'
[2025-07-11 00:45:36] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-07-11 00:45:36] + '[' -f /etc/os-release ']'
[2025-07-11 00:45:36] +++ cat /etc/os-release
[2025-07-11 00:45:36] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-07-11 00:45:36] +++ NAME='CentOS Linux'
[2025-07-11 00:45:36] +++ VERSION='7 (Core)'
[2025-07-11 00:45:36] +++ ID=centos
[2025-07-11 00:45:36] +++ ID_LIKE='rhel fedora'
[2025-07-11 00:45:36] +++ VERSION_ID=7
[2025-07-11 00:45:36] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-07-11 00:45:36] +++ ANSI_COLOR='0;31'
[2025-07-11 00:45:36] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-07-11 00:45:36] +++ HOME_URL=https://www.centos.org/
[2025-07-11 00:45:36] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-07-11 00:45:36] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-07-11 00:45:36] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-07-11 00:45:36] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-07-11 00:45:36] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-07-11 00:45:36] ++ echo 'CentOS Linux 7 (Core)'
[2025-07-11 00:45:36] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-07-11 00:45:36] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-07-11 00:45:36] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-07-11 00:45:36] + HOME=/scratch/boinc/var/slot48/slots/0
[2025-07-11 00:45:36] + export HOME
[2025-07-11 00:45:36] + cd /scratch/boinc/var/slot48/slots/0
[2025-07-11 00:45:36] + '[' '!' -z '' ']'
[2025-07-11 00:45:36] + '[' -z '' ']'
[2025-07-11 00:45:36] ++ /bin/hostname -f
[2025-07-11 00:45:36] + nodename=skurut05.grid.cesnet.cz
[2025-07-11 00:45:36] + echo nodename=skurut05.grid.cesnet.cz
[2025-07-11 00:45:36] + echo Processors=2
[2025-07-11 00:45:36] + echo Nodecount=1
[2025-07-11 00:45:36] + echo Benchmark=HEPSPEC:1.0
[2025-07-11 00:45:36] + executable=./runpilot2-wrapper.sh
[2025-07-11 00:45:36] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-07-11 00:45:36] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-07-11 00:45:36] ++ head -n 1
[2025-07-11 00:45:36] ++ tr -d '\0'
[2025-07-11 00:45:36] + line1='#!/bin/bash'
[2025-07-11 00:45:36] ++ echo '#!/bin/bash'
[2025-07-11 00:45:36] ++ sed -n 's/^#! *//p'
[2025-07-11 00:45:36] + shebang=/bin/bash
[2025-07-11 00:45:36] ++ echo /bin/bash
[2025-07-11 00:45:36] ++ awk '{print $1}'
[2025-07-11 00:45:36] + interpreter=/bin/bash
[2025-07-11 00:45:36] + '[' /bin/bash = /usr/bin/env ']'
[2025-07-11 00:45:36] + '[' x/bin/bash = x ']'
[2025-07-11 00:45:36] + type /bin/bash
[2025-07-11 00:45:36] + '[' xgnutime = xgnutime ']'
[2025-07-11 00:45:36] + /usr/bin/time -o /scratch/boinc/var/slot48/slots/0/QWEMDmUaus7n9Rq4apOajLDm4fhM0noT9bVof3QYDmxwrKDmKD7mUm.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.4.12 -z -t --piloturl local --mute --container
[2025-07-11 00:45:36] + RESULT=2
[2025-07-11 00:45:36] + sed -i -e /nodename=/d /scratch/boinc/var/slot48/slots/0/QWEMDmUaus7n9Rq4apOajLDm4fhM0noT9bVof3QYDmxwrKDmKD7mUm.diag
[2025-07-11 00:45:36] ++ grep domain_name init_data.xml
[2025-07-11 00:45:36] ++ awk -F '>' '{print $2}'
[2025-07-11 00:45:36] ++ awk -F '<' '{print $1}'
[2025-07-11 00:45:36] ++ sed -e 's# #_#g'
[2025-07-11 00:45:36] + hostname=skurut05.grid.cesnet.cz
[2025-07-11 00:45:36] ++ grep user_name init_data.xml
[2025-07-11 00:45:36] ++ awk -F '>' '{print $2}'
[2025-07-11 00:45:36] ++ awk -F '<' '{print $1}'
[2025-07-11 00:45:36] ++ sed -e 's# #_#g'
[2025-07-11 00:45:36] + username=praguelcg2
[2025-07-11 00:45:36] + nodename=praguelcg2@skurut05.grid.cesnet.cz
[2025-07-11 00:45:36] + echo nodename=praguelcg2@skurut05.grid.cesnet.cz
[2025-07-11 00:45:36] + '[' -n 4 ']'
[2025-07-11 00:45:36] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot48/slots/0/QWEMDmUaus7n9Rq4apOajLDm4fhM0noT9bVof3QYDmxwrKDmKD7mUm.diag
[2025-07-11 00:45:36] + echo exitcode=2
[2025-07-11 00:45:36] + runtimeenvironments=
[2025-07-11 00:45:36] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-07-11 00:45:36] + RTE_function_0 2
[2025-07-11 00:45:36] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-07-11 00:45:36] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-07-11 00:45:36] + export BOINC_APP=ATLAS
[2025-07-11 00:45:36] + BOINC_APP=ATLAS
[2025-07-11 00:45:36] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-07-11 00:45:36] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-07-11 00:45:36] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-07-11 00:45:36] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-07-11 00:45:36] + '[' -z 2 ']'
[2025-07-11 00:45:36] + '[' 2 == 1 ']'
[2025-07-11 00:45:36] + '[' 0 -ne 0 ']'
[2025-07-11 00:45:36] + echo 'zip all output files'
[2025-07-11 00:45:36] + flist='*.diag '
[2025-07-11 00:45:36] + for f in ./heartbeat.json ./output.list ./log.45482148._014379.job.log.1 ./log.45482148._014379.job.log.1 ./gmlog/
[2025-07-11 00:45:36] + '[' -e ./heartbeat.json ']'
[2025-07-11 00:45:36] + flist='*.diag  ./heartbeat.json'
[2025-07-11 00:45:36] + for f in ./heartbeat.json ./output.list ./log.45482148._014379.job.log.1 ./log.45482148._014379.job.log.1 ./gmlog/
[2025-07-11 00:45:36] + '[' -e ./output.list ']'
[2025-07-11 00:45:36] + for f in ./heartbeat.json ./output.list ./log.45482148._014379.job.log.1 ./log.45482148._014379.job.log.1 ./gmlog/
[2025-07-11 00:45:36] + '[' -e ./log.45482148._014379.job.log.1 ']'
[2025-07-11 00:45:36] + flist='*.diag  ./heartbeat.json ./log.45482148._014379.job.log.1'
[2025-07-11 00:45:36] + for f in ./heartbeat.json ./output.list ./log.45482148._014379.job.log.1 ./log.45482148._014379.job.log.1 ./gmlog/
[2025-07-11 00:45:36] + '[' -e ./log.45482148._014379.job.log.1 ']'
[2025-07-11 00:45:36] + flist='*.diag  ./heartbeat.json ./log.45482148._014379.job.log.1 ./log.45482148._014379.job.log.1'
[2025-07-11 00:45:36] + for f in ./heartbeat.json ./output.list ./log.45482148._014379.job.log.1 ./log.45482148._014379.job.log.1 ./gmlog/
[2025-07-11 00:45:36] + '[' -e ./gmlog/ ']'
[2025-07-11 00:45:36] + '[' -f output.list ']'
[2025-07-11 00:45:36] + tar cvf result.tar.gz QWEMDmUaus7n9Rq4apOajLDm4fhM0noT9bVof3QYDmxwrKDmKD7mUm.diag ./heartbeat.json ./log.45482148._014379.job.log.1 ./log.45482148._014379.job.log.1
[2025-07-11 00:45:36] + '[' xgnutime = xcgroup ']'
[2025-07-11 00:45:36] + '[' -n '' ']'
[2025-07-11 00:45:36] + '[' -n '' ']'
[2025-07-11 00:45:36] ++ date +%s
[2025-07-11 00:45:36] + ACCOUNTING_ENDTIME=1752187536
[2025-07-11 00:45:36] ++ date -d '1970-01-01 UTC 1752187347 seconds' +%Y%m%d%H%M%SZ
[2025-07-11 00:45:36] + echo LRMSStartTime=20250711004227Z
[2025-07-11 00:45:36] ++ date -d '1970-01-01 UTC 1752187536 seconds' +%Y%m%d%H%M%SZ
[2025-07-11 00:45:36] + echo LRMSEndTime=20250711004536Z
[2025-07-11 00:45:36] + echo walltime=189
[2025-07-11 00:45:36] + echo exitcode=2
[2025-07-11 00:45:36] + exit 2
[2025-07-11 00:45:36] ./pilotlog.txt
[2025-07-11 00:45:36] ./log.45482148._014379.job.log.tgz.1
[2025-07-11 00:45:36] ./log.45482148._014379.job.log.1
[2025-07-11 00:45:36] ./runtime_log.err
[2025-07-11 00:45:36] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-07-11 00:45:36] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-07-11 00:45:36] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-07-11 00:45:36] ./pilot3/pilot/util/realtimelogger.py
[2025-07-11 00:45:36] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-07-11 00:45:36] ./pilot3/pilot/util/loggingsupport.py
[2025-07-11 00:45:36] ./PanDA_Pilot-6721339277/pilotlog.txt
[2025-07-11 00:45:36] ./PanDA_Pilot-6721339277/prmon.log
[2025-07-11 00:45:36] ./PanDA_Pilot-6721339277/log.EVNTtoHITS
[2025-07-11 00:45:36] ./PanDA_Pilot-6721339277/PoolFileCatalog.xml
[2025-07-11 00:45:36] ./runtime_log
13:32:15 (2142534): wrapper (7.7.26015): starting
13:32:15 (2142534): wrapper: running run_atlas (--nthreads 4)
[2025-07-11 13:32:15] Arguments: --nthreads 4
[2025-07-11 13:32:15] Threads: 4
[2025-07-11 13:32:15] This job has been restarted, cleaning up previous attempt
[2025-07-11 13:32:15] Checking for CVMFS
[2025-07-11 13:32:15] No cvmfs_config command found, will try listing directly
[2025-07-11 13:32:16] CVMFS is ok
[2025-07-11 13:32:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-11 13:32:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-11 13:32:16] Further information can be found at the LHC@home message board.
[2025-07-11 13:32:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-11 13:32:16] Checking for apptainer binary...
[2025-07-11 13:32:16] which: no apptainer in ((null))
[2025-07-11 13:32:16] apptainer is not installed, using version from CVMFS
[2025-07-11 13:32:16] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-11 13:32:16] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot48/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut05.grid.cesnet.cz
[2025-07-11 13:32:16] apptainer works
[2025-07-11 13:32:16] Set ATHENA_PROC_NUMBER=4
[2025-07-11 13:32:16] Set ATHENA_CORE_NUMBER=4
[2025-07-11 13:32:16] Starting ATLAS job with PandaID=6721339277
[2025-07-11 13:32:16] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot48/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-11 13:35:28] Job failed
[2025-07-11 13:35:28] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot48/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-07-11 13:35:28] ++ pwd
[2025-07-11 13:35:28] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot48/slots/0/
[2025-07-11 13:35:28] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot48/slots/0/
[2025-07-11 13:35:28] + mv ATLAS.root_0 EVNT.45482146._000573.pool.root.1
[2025-07-11 13:35:28] mv: 'ATLAS.root_0' and 'EVNT.45482146._000573.pool.root.1' are the same file
[2025-07-11 13:35:28] + tar --strip-components=5 -xvf input.tar.gz
[2025-07-11 13:35:28] + umask 077
[2025-07-11 13:35:28] ++ date +%s
[2025-07-11 13:35:28] + ACCOUNTING_STARTTIME=1752233536
[2025-07-11 13:35:28] + echo 'Detecting resource accounting method available for the job.'
[2025-07-11 13:35:28] Detecting resource accounting method available for the job.
[2025-07-11 13:35:28] + JOB_ACCOUNTING=
[2025-07-11 13:35:28] + command -v arc-job-cgroup
[2025-07-11 13:35:28] + '[' -z '' ']'
[2025-07-11 13:35:28] + GNU_TIME=/usr/bin/time
[2025-07-11 13:35:28] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-07-11 13:35:28] Looking for /usr/bin/time tool for accounting measurements
[2025-07-11 13:35:28] + '[' '!' -z /usr/bin/time ']'
[2025-07-11 13:35:28] + /usr/bin/time --version
[2025-07-11 13:35:28] + echo 'GNU time found and will be used for job accounting.'
[2025-07-11 13:35:28] GNU time found and will be used for job accounting.
[2025-07-11 13:35:28] + JOB_ACCOUNTING=gnutime
[2025-07-11 13:35:28] + '[' -z gnutime ']'
[2025-07-11 13:35:28] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-07-11 13:35:28] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-07-11 13:35:28] + export GTAG=http://aipanda404.cern.ch/data/jobs/2025-07-07/BOINC_MCORE/6721339277.out
[2025-07-11 13:35:28] + GTAG=http://aipanda404.cern.ch/data/jobs/2025-07-07/BOINC_MCORE/6721339277.out
[2025-07-11 13:35:28] + export PILOT_NOKILL=YES
[2025-07-11 13:35:28] + PILOT_NOKILL=YES
[2025-07-11 13:35:28] + export GRID_GLOBAL_JOBID=QWEMDmUaus7n9Rq4apOajLDm4fhM0noT9bVof3QYDmxwrKDmKD7mUm
[2025-07-11 13:35:28] + GRID_GLOBAL_JOBID=QWEMDmUaus7n9Rq4apOajLDm4fhM0noT9bVof3QYDmxwrKDmKD7mUm
[2025-07-11 13:35:28] + export GRID_GLOBAL_JOBURL=https://arc-boinc-03.cern.ch:443/arex/QWEMDmUaus7n9Rq4apOajLDm4fhM0noT9bVof3QYDmxwrKDmKD7mUm
[2025-07-11 13:35:28] + GRID_GLOBAL_JOBURL=https://arc-boinc-03.cern.ch:443/arex/QWEMDmUaus7n9Rq4apOajLDm4fhM0noT9bVof3QYDmxwrKDmKD7mUm
[2025-07-11 13:35:28] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-07-11 13:35:28] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-07-11 13:35:28] + export GRID_GLOBAL_JOBHOST=arc-boinc-03.cern.ch
[2025-07-11 13:35:28] + GRID_GLOBAL_JOBHOST=arc-boinc-03.cern.ch
[2025-07-11 13:35:28] ++ pwd
[2025-07-11 13:35:28] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot48/slots/0
[2025-07-11 13:35:28] + RUNTIME_JOB_STDIN=/dev/null
[2025-07-11 13:35:28] ++ pwd
[2025-07-11 13:35:28] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot48/slots/0/log.45482148._014379.job.log.1
[2025-07-11 13:35:28] ++ pwd
[2025-07-11 13:35:28] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot48/slots/0/log.45482148._014379.job.log.1
[2025-07-11 13:35:28] ++ pwd
[2025-07-11 13:35:28] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot48/slots/0.diag
[2025-07-11 13:35:28] + '[' '!' -z '' ']'
[2025-07-11 13:35:28] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-07-11 13:35:28] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-07-11 13:35:28] + RUNTIME_FRONTEND_SEES_NODE=
[2025-07-11 13:35:28] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-07-11 13:35:28] + '[' '!' -z '' ']'
[2025-07-11 13:35:28] + '[' -z yes ']'
[2025-07-11 13:35:28] ++ pwd
[2025-07-11 13:35:28] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot48/slots/0/QWEMDmUaus7n9Rq4apOajLDm4fhM0noT9bVof3QYDmxwrKDmKD7mUm.diag
[2025-07-11 13:35:28] + runtimeenvironments=
[2025-07-11 13:35:28] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-07-11 13:35:28] + RTE_function_0 1
[2025-07-11 13:35:28] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-07-11 13:35:28] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-07-11 13:35:28] + export BOINC_APP=ATLAS
[2025-07-11 13:35:28] + BOINC_APP=ATLAS
[2025-07-11 13:35:28] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-07-11 13:35:28] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-07-11 13:35:28] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-07-11 13:35:28] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-07-11 13:35:28] + '[' -z 1 ']'
[2025-07-11 13:35:28] + '[' 1 == 1 ']'
[2025-07-11 13:35:28] + shift
[2025-07-11 13:35:28] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot48/slots/0/
[2025-07-11 13:35:28] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot48/slots/0/
[2025-07-11 13:35:28] + '[' 0 -ne 0 ']'
[2025-07-11 13:35:28] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-07-11 13:35:28] + '[' -f /etc/os-release ']'
[2025-07-11 13:35:28] +++ cat /etc/os-release
[2025-07-11 13:35:28] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-07-11 13:35:28] +++ NAME='CentOS Linux'
[2025-07-11 13:35:28] +++ VERSION='7 (Core)'
[2025-07-11 13:35:28] +++ ID=centos
[2025-07-11 13:35:28] +++ ID_LIKE='rhel fedora'
[2025-07-11 13:35:28] +++ VERSION_ID=7
[2025-07-11 13:35:28] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-07-11 13:35:28] +++ ANSI_COLOR='0;31'
[2025-07-11 13:35:28] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-07-11 13:35:28] +++ HOME_URL=https://www.centos.org/
[2025-07-11 13:35:28] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-07-11 13:35:28] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-07-11 13:35:28] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-07-11 13:35:28] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-07-11 13:35:28] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-07-11 13:35:28] ++ echo 'CentOS Linux 7 (Core)'
[2025-07-11 13:35:28] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-07-11 13:35:28] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-07-11 13:35:28] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-07-11 13:35:28] + HOME=/scratch/boinc/var/slot48/slots/0
[2025-07-11 13:35:28] + export HOME
[2025-07-11 13:35:28] + cd /scratch/boinc/var/slot48/slots/0
[2025-07-11 13:35:28] + '[' '!' -z '' ']'
[2025-07-11 13:35:28] + '[' -z '' ']'
[2025-07-11 13:35:28] ++ /bin/hostname -f
[2025-07-11 13:35:28] + nodename=skurut05.grid.cesnet.cz
[2025-07-11 13:35:28] + echo nodename=skurut05.grid.cesnet.cz
[2025-07-11 13:35:28] + echo Processors=2
[2025-07-11 13:35:28] + echo Nodecount=1
[2025-07-11 13:35:28] + echo Benchmark=HEPSPEC:1.0
[2025-07-11 13:35:28] + executable=./runpilot2-wrapper.sh
[2025-07-11 13:35:28] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-07-11 13:35:28] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-07-11 13:35:28] ++ head -n 1
[2025-07-11 13:35:28] ++ tr -d '\0'
[2025-07-11 13:35:28] + line1='#!/bin/bash'
[2025-07-11 13:35:28] ++ echo '#!/bin/bash'
[2025-07-11 13:35:28] ++ sed -n 's/^#! *//p'
[2025-07-11 13:35:28] + shebang=/bin/bash
[2025-07-11 13:35:28] ++ echo /bin/bash
[2025-07-11 13:35:28] ++ awk '{print $1}'
[2025-07-11 13:35:28] + interpreter=/bin/bash
[2025-07-11 13:35:28] + '[' /bin/bash = /usr/bin/env ']'
[2025-07-11 13:35:28] + '[' x/bin/bash = x ']'
[2025-07-11 13:35:28] + type /bin/bash
[2025-07-11 13:35:28] + '[' xgnutime = xgnutime ']'
[2025-07-11 13:35:28] + /usr/bin/time -o /scratch/boinc/var/slot48/slots/0/QWEMDmUaus7n9Rq4apOajLDm4fhM0noT9bVof3QYDmxwrKDmKD7mUm.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.4.12 -z -t --piloturl local --mute --container
[2025-07-11 13:35:28] + RESULT=2
[2025-07-11 13:35:28] + sed -i -e /nodename=/d /scratch/boinc/var/slot48/slots/0/QWEMDmUaus7n9Rq4apOajLDm4fhM0noT9bVof3QYDmxwrKDmKD7mUm.diag
[2025-07-11 13:35:28] ++ grep domain_name init_data.xml
[2025-07-11 13:35:28] ++ awk -F '>' '{print $2}'
[2025-07-11 13:35:28] ++ awk -F '<' '{print $1}'
[2025-07-11 13:35:28] ++ sed -e 's# #_#g'
[2025-07-11 13:35:28] + hostname=skurut05.grid.cesnet.cz
[2025-07-11 13:35:28] ++ grep user_name init_data.xml
[2025-07-11 13:35:28] ++ awk -F '>' '{print $2}'
[2025-07-11 13:35:28] ++ awk -F '<' '{print $1}'
[2025-07-11 13:35:28] ++ sed -e 's# #_#g'
[2025-07-11 13:35:28] + username=praguelcg2
[2025-07-11 13:35:28] + nodename=praguelcg2@skurut05.grid.cesnet.cz
[2025-07-11 13:35:28] + echo nodename=praguelcg2@skurut05.grid.cesnet.cz
[2025-07-11 13:35:28] + '[' -n 4 ']'
[2025-07-11 13:35:28] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot48/slots/0/QWEMDmUaus7n9Rq4apOajLDm4fhM0noT9bVof3QYDmxwrKDmKD7mUm.diag
[2025-07-11 13:35:28] + echo exitcode=2
[2025-07-11 13:35:28] + runtimeenvironments=
[2025-07-11 13:35:28] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-07-11 13:35:28] + RTE_function_0 2
[2025-07-11 13:35:28] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-07-11 13:35:28] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-07-11 13:35:28] + export BOINC_APP=ATLAS
[2025-07-11 13:35:28] + BOINC_APP=ATLAS
[2025-07-11 13:35:28] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-07-11 13:35:28] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-07-11 13:35:28] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-07-11 13:35:28] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-07-11 13:35:28] + '[' -z 2 ']'
[2025-07-11 13:35:28] + '[' 2 == 1 ']'
[2025-07-11 13:35:28] + '[' 0 -ne 0 ']'
[2025-07-11 13:35:28] + echo 'zip all output files'
[2025-07-11 13:35:28] + flist='*.diag '
[2025-07-11 13:35:28] + for f in ./heartbeat.json ./output.list ./log.45482148._014379.job.log.1 ./log.45482148._014379.job.log.1 ./gmlog/
[2025-07-11 13:35:28] + '[' -e ./heartbeat.json ']'
[2025-07-11 13:35:28] + flist='*.diag  ./heartbeat.json'
[2025-07-11 13:35:28] + for f in ./heartbeat.json ./output.list ./log.45482148._014379.job.log.1 ./log.45482148._014379.job.log.1 ./gmlog/
[2025-07-11 13:35:28] + '[' -e ./output.list ']'
[2025-07-11 13:35:28] + for f in ./heartbeat.json ./output.list ./log.45482148._014379.job.log.1 ./log.45482148._014379.job.log.1 ./gmlog/
[2025-07-11 13:35:28] + '[' -e ./log.45482148._014379.job.log.1 ']'
[2025-07-11 13:35:28] + flist='*.diag  ./heartbeat.json ./log.45482148._014379.job.log.1'
[2025-07-11 13:35:28] + for f in ./heartbeat.json ./output.list ./log.45482148._014379.job.log.1 ./log.45482148._014379.job.log.1 ./gmlog/
[2025-07-11 13:35:28] + '[' -e ./log.45482148._014379.job.log.1 ']'
[2025-07-11 13:35:28] + flist='*.diag  ./heartbeat.json ./log.45482148._014379.job.log.1 ./log.45482148._014379.job.log.1'
[2025-07-11 13:35:28] + for f in ./heartbeat.json ./output.list ./log.45482148._014379.job.log.1 ./log.45482148._014379.job.log.1 ./gmlog/
[2025-07-11 13:35:28] + '[' -e ./gmlog/ ']'
[2025-07-11 13:35:28] + '[' -f output.list ']'
[2025-07-11 13:35:28] + tar cvf result.tar.gz QWEMDmUaus7n9Rq4apOajLDm4fhM0noT9bVof3QYDmxwrKDmKD7mUm.diag ./heartbeat.json ./log.45482148._014379.job.log.1 ./log.45482148._014379.job.log.1
[2025-07-11 13:35:28] + '[' xgnutime = xcgroup ']'
[2025-07-11 13:35:28] + '[' -n '' ']'
[2025-07-11 13:35:28] + '[' -n '' ']'
[2025-07-11 13:35:28] ++ date +%s
[2025-07-11 13:35:28] + ACCOUNTING_ENDTIME=1752233726
[2025-07-11 13:35:28] ++ date -d '1970-01-01 UTC 1752233536 seconds' +%Y%m%d%H%M%SZ
[2025-07-11 13:35:28] + echo LRMSStartTime=20250711133216Z
[2025-07-11 13:35:28] ++ date -d '1970-01-01 UTC 1752233726 seconds' +%Y%m%d%H%M%SZ
[2025-07-11 13:35:28] + echo LRMSEndTime=20250711133526Z
[2025-07-11 13:35:28] + echo walltime=190
[2025-07-11 13:35:28] + echo exitcode=2
[2025-07-11 13:35:28] + exit 2
[2025-07-11 13:35:28] ./pilotlog.txt
[2025-07-11 13:35:28] ./log.45482148._014379.job.log.tgz.1
[2025-07-11 13:35:28] ./log.45482148._014379.job.log.1
[2025-07-11 13:35:28] ./runtime_log.err
[2025-07-11 13:35:28] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-07-11 13:35:28] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-07-11 13:35:28] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-07-11 13:35:28] ./pilot3/pilot/util/realtimelogger.py
[2025-07-11 13:35:28] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-07-11 13:35:28] ./pilot3/pilot/util/loggingsupport.py
[2025-07-11 13:35:28] ./PanDA_Pilot-6721339277/pilotlog.txt
[2025-07-11 13:35:28] ./PanDA_Pilot-6721339277/prmon.log
[2025-07-11 13:35:28] ./PanDA_Pilot-6721339277/log.EVNTtoHITS
[2025-07-11 13:35:28] ./PanDA_Pilot-6721339277/PoolFileCatalog.xml
[2025-07-11 13:35:28] ./runtime_log
13:49:51 (2142534): run_atlas exited; CPU time 18.633913
13:49:51 (2142534): app exit status: 0x1
13:49:51 (2142534): called boinc_finish(195)

</stderr_txt>
]]>

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