Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<message>
process exited with code 195 (0xc3, -61)</message>
<stderr_txt>
GQJmUXzaDmat9KDmujYFdn
[2025-07-09 01:31:39] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/oM6LDmS69r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmat9KDmujYFdn
[2025-07-09 01:31:39] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/oM6LDmS69r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmat9KDmujYFdn
[2025-07-09 01:31:39] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-07-09 01:31:39] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-07-09 01:31:39] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-07-09 01:31:39] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-07-09 01:31:39] ++ pwd
[2025-07-09 01:31:39] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot8/slots/0
[2025-07-09 01:31:39] + RUNTIME_JOB_STDIN=/dev/null
[2025-07-09 01:31:39] ++ pwd
[2025-07-09 01:31:39] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot8/slots/0/log.45482040._002188.job.log.1
[2025-07-09 01:31:39] ++ pwd
[2025-07-09 01:31:39] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot8/slots/0/log.45482040._002188.job.log.1
[2025-07-09 01:31:39] ++ pwd
[2025-07-09 01:31:39] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot8/slots/0.diag
[2025-07-09 01:31:39] + '[' '!' -z '' ']'
[2025-07-09 01:31:39] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-07-09 01:31:39] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-07-09 01:31:39] + RUNTIME_FRONTEND_SEES_NODE=
[2025-07-09 01:31:39] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-07-09 01:31:39] + '[' '!' -z '' ']'
[2025-07-09 01:31:39] + '[' -z yes ']'
[2025-07-09 01:31:39] ++ pwd
[2025-07-09 01:31:39] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot8/slots/0/oM6LDmS69r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmat9KDmujYFdn.diag
[2025-07-09 01:31:39] + runtimeenvironments=
[2025-07-09 01:31:39] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-07-09 01:31:39] + RTE_function_0 1
[2025-07-09 01:31:39] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-07-09 01:31:39] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-07-09 01:31:39] + export BOINC_APP=ATLAS
[2025-07-09 01:31:39] + BOINC_APP=ATLAS
[2025-07-09 01:31:39] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-07-09 01:31:39] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-07-09 01:31:39] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-07-09 01:31:39] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-07-09 01:31:39] + '[' -z 1 ']'
[2025-07-09 01:31:39] + '[' 1 == 1 ']'
[2025-07-09 01:31:39] + shift
[2025-07-09 01:31:39] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot8/slots/0/
[2025-07-09 01:31:39] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot8/slots/0/
[2025-07-09 01:31:39] + '[' 0 -ne 0 ']'
[2025-07-09 01:31:39] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-07-09 01:31:39] + '[' -f /etc/os-release ']'
[2025-07-09 01:31:39] +++ cat /etc/os-release
[2025-07-09 01:31:39] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-07-09 01:31:39] +++ NAME='CentOS Linux'
[2025-07-09 01:31:39] +++ VERSION='7 (Core)'
[2025-07-09 01:31:39] +++ ID=centos
[2025-07-09 01:31:39] +++ ID_LIKE='rhel fedora'
[2025-07-09 01:31:39] +++ VERSION_ID=7
[2025-07-09 01:31:39] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-07-09 01:31:39] +++ ANSI_COLOR='0;31'
[2025-07-09 01:31:39] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-07-09 01:31:39] +++ HOME_URL=https://www.centos.org/
[2025-07-09 01:31:39] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-07-09 01:31:39] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-07-09 01:31:39] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-07-09 01:31:39] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-07-09 01:31:39] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-07-09 01:31:39] ++ echo 'CentOS Linux 7 (Core)'
[2025-07-09 01:31:39] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-07-09 01:31:39] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-07-09 01:31:39] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-07-09 01:31:39] + HOME=/scratch/boinc/var/slot8/slots/0
[2025-07-09 01:31:39] + export HOME
[2025-07-09 01:31:39] + cd /scratch/boinc/var/slot8/slots/0
[2025-07-09 01:31:39] + '[' '!' -z '' ']'
[2025-07-09 01:31:39] + '[' -z '' ']'
[2025-07-09 01:31:39] ++ /bin/hostname -f
[2025-07-09 01:31:39] + nodename=skurut17.grid.cesnet.cz
[2025-07-09 01:31:39] + echo nodename=skurut17.grid.cesnet.cz
[2025-07-09 01:31:39] + echo Processors=2
[2025-07-09 01:31:39] + echo Nodecount=1
[2025-07-09 01:31:39] + echo Benchmark=HEPSPEC:1.0
[2025-07-09 01:31:39] + executable=./runpilot2-wrapper.sh
[2025-07-09 01:31:39] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-07-09 01:31:39] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-07-09 01:31:39] ++ head -n 1
[2025-07-09 01:31:39] ++ tr -d '\0'
[2025-07-09 01:31:39] + line1='#!/bin/bash'
[2025-07-09 01:31:39] ++ echo '#!/bin/bash'
[2025-07-09 01:31:39] ++ sed -n 's/^#! *//p'
[2025-07-09 01:31:39] + shebang=/bin/bash
[2025-07-09 01:31:39] ++ echo /bin/bash
[2025-07-09 01:31:39] ++ awk '{print $1}'
[2025-07-09 01:31:39] + interpreter=/bin/bash
[2025-07-09 01:31:39] + '[' /bin/bash = /usr/bin/env ']'
[2025-07-09 01:31:39] + '[' x/bin/bash = x ']'
[2025-07-09 01:31:39] + type /bin/bash
[2025-07-09 01:31:39] + '[' xgnutime = xgnutime ']'
[2025-07-09 01:31:39] + /usr/bin/time -o /scratch/boinc/var/slot8/slots/0/oM6LDmS69r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmat9KDmujYFdn.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.4.12 -z -t --piloturl local --mute --container
[2025-07-09 01:31:39] + RESULT=2
[2025-07-09 01:31:39] + sed -i -e /nodename=/d /scratch/boinc/var/slot8/slots/0/oM6LDmS69r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmat9KDmujYFdn.diag
[2025-07-09 01:31:39] ++ grep domain_name init_data.xml
[2025-07-09 01:31:39] ++ awk -F '>' '{print $2}'
[2025-07-09 01:31:39] ++ awk -F '<' '{print $1}'
[2025-07-09 01:31:39] ++ sed -e 's# #_#g'
[2025-07-09 01:31:39] + hostname=skurut17.grid.cesnet.cz
[2025-07-09 01:31:39] ++ grep user_name init_data.xml
[2025-07-09 01:31:39] ++ awk -F '>' '{print $2}'
[2025-07-09 01:31:39] ++ awk -F '<' '{print $1}'
[2025-07-09 01:31:39] ++ sed -e 's# #_#g'
[2025-07-09 01:31:39] + username=praguelcg2
[2025-07-09 01:31:39] + nodename=praguelcg2@skurut17.grid.cesnet.cz
[2025-07-09 01:31:39] + echo nodename=praguelcg2@skurut17.grid.cesnet.cz
[2025-07-09 01:31:39] + '[' -n 4 ']'
[2025-07-09 01:31:39] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot8/slots/0/oM6LDmS69r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmat9KDmujYFdn.diag
[2025-07-09 01:31:39] + echo exitcode=2
[2025-07-09 01:31:39] + runtimeenvironments=
[2025-07-09 01:31:39] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-07-09 01:31:39] + RTE_function_0 2
[2025-07-09 01:31:39] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-07-09 01:31:39] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-07-09 01:31:39] + export BOINC_APP=ATLAS
[2025-07-09 01:31:39] + BOINC_APP=ATLAS
[2025-07-09 01:31:39] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-07-09 01:31:39] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-07-09 01:31:39] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-07-09 01:31:39] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-07-09 01:31:39] + '[' -z 2 ']'
[2025-07-09 01:31:39] + '[' 2 == 1 ']'
[2025-07-09 01:31:39] + '[' 0 -ne 0 ']'
[2025-07-09 01:31:39] + echo 'zip all output files'
[2025-07-09 01:31:39] + flist='*.diag '
[2025-07-09 01:31:39] + for f in ./heartbeat.json ./output.list ./log.45482040._002188.job.log.1 ./log.45482040._002188.job.log.1 ./gmlog/
[2025-07-09 01:31:39] + '[' -e ./heartbeat.json ']'
[2025-07-09 01:31:39] + flist='*.diag  ./heartbeat.json'
[2025-07-09 01:31:39] + for f in ./heartbeat.json ./output.list ./log.45482040._002188.job.log.1 ./log.45482040._002188.job.log.1 ./gmlog/
[2025-07-09 01:31:39] + '[' -e ./output.list ']'
[2025-07-09 01:31:39] + for f in ./heartbeat.json ./output.list ./log.45482040._002188.job.log.1 ./log.45482040._002188.job.log.1 ./gmlog/
[2025-07-09 01:31:39] + '[' -e ./log.45482040._002188.job.log.1 ']'
[2025-07-09 01:31:39] + flist='*.diag  ./heartbeat.json ./log.45482040._002188.job.log.1'
[2025-07-09 01:31:39] + for f in ./heartbeat.json ./output.list ./log.45482040._002188.job.log.1 ./log.45482040._002188.job.log.1 ./gmlog/
[2025-07-09 01:31:39] + '[' -e ./log.45482040._002188.job.log.1 ']'
[2025-07-09 01:31:39] + flist='*.diag  ./heartbeat.json ./log.45482040._002188.job.log.1 ./log.45482040._002188.job.log.1'
[2025-07-09 01:31:39] + for f in ./heartbeat.json ./output.list ./log.45482040._002188.job.log.1 ./log.45482040._002188.job.log.1 ./gmlog/
[2025-07-09 01:31:39] + '[' -e ./gmlog/ ']'
[2025-07-09 01:31:39] + '[' -f output.list ']'
[2025-07-09 01:31:39] + tar cvf result.tar.gz oM6LDmS69r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmat9KDmujYFdn.diag ./heartbeat.json ./log.45482040._002188.job.log.1 ./log.45482040._002188.job.log.1
[2025-07-09 01:31:39] + '[' xgnutime = xcgroup ']'
[2025-07-09 01:31:39] + '[' -n '' ']'
[2025-07-09 01:31:39] + '[' -n '' ']'
[2025-07-09 01:31:39] ++ date +%s
[2025-07-09 01:31:39] + ACCOUNTING_ENDTIME=1752017499
[2025-07-09 01:31:39] ++ date -d '1970-01-01 UTC 1752017308 seconds' +%Y%m%d%H%M%SZ
[2025-07-09 01:31:39] + echo LRMSStartTime=20250709012828Z
[2025-07-09 01:31:39] ++ date -d '1970-01-01 UTC 1752017499 seconds' +%Y%m%d%H%M%SZ
[2025-07-09 01:31:39] + echo LRMSEndTime=20250709013139Z
[2025-07-09 01:31:39] + echo walltime=191
[2025-07-09 01:31:39] + echo exitcode=2
[2025-07-09 01:31:39] + exit 2
[2025-07-09 01:31:39] ./PanDA_Pilot-6720606877/PoolFileCatalog.xml
[2025-07-09 01:31:39] ./PanDA_Pilot-6720606877/prmon.log
[2025-07-09 01:31:39] ./PanDA_Pilot-6720606877/pilotlog.txt
[2025-07-09 01:31:39] ./PanDA_Pilot-6720606877/log.EVNTtoHITS
[2025-07-09 01:31:39] ./runtime_log.err
[2025-07-09 01:31:39] ./pilotlog.txt
[2025-07-09 01:31:39] ./log.45482040._002188.job.log.1
[2025-07-09 01:31:39] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-07-09 01:31:39] ./pilot3/pilot/util/loggingsupport.py
[2025-07-09 01:31:39] ./pilot3/pilot/util/realtimelogger.py
[2025-07-09 01:31:39] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-07-09 01:31:39] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-07-09 01:31:39] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-07-09 01:31:39] ./runtime_log
02:40:18 (1381085): wrapper (7.7.26015): starting
02:40:18 (1381085): wrapper: running run_atlas (--nthreads 4)
[2025-07-09 02:40:18] Arguments: --nthreads 4
[2025-07-09 02:40:18] Threads: 4
[2025-07-09 02:40:18] This job has been restarted, cleaning up previous attempt
[2025-07-09 02:40:18] Checking for CVMFS
[2025-07-09 02:40:18] No cvmfs_config command found, will try listing directly
[2025-07-09 02:40:18] CVMFS is ok
[2025-07-09 02:40:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-09 02:40:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-09 02:40:18] Further information can be found at the LHC@home message board.
[2025-07-09 02:40:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-09 02:40:18] Checking for apptainer binary...
[2025-07-09 02:40:18] which: no apptainer in ((null))
[2025-07-09 02:40:18] apptainer is not installed, using version from CVMFS
[2025-07-09 02:40:18] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-09 02:40:19] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot8/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2025-07-09 02:40:19] apptainer works
[2025-07-09 02:40:19] Set ATHENA_PROC_NUMBER=4
[2025-07-09 02:40:19] Set ATHENA_CORE_NUMBER=4
[2025-07-09 02:40:19] Starting ATLAS job with PandaID=6720606877
[2025-07-09 02:40:19] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot8/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-09 02:43:29] Job failed
[2025-07-09 02:43:29] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot8/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-07-09 02:43:29] ++ pwd
[2025-07-09 02:43:29] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot8/slots/0/
[2025-07-09 02:43:29] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot8/slots/0/
[2025-07-09 02:43:29] + mv ATLAS.root_0 EVNT.45482038._000088.pool.root.1
[2025-07-09 02:43:29] mv: 'ATLAS.root_0' and 'EVNT.45482038._000088.pool.root.1' are the same file
[2025-07-09 02:43:29] + tar --strip-components=5 -xvf input.tar.gz
[2025-07-09 02:43:29] + umask 077
[2025-07-09 02:43:29] ++ date +%s
[2025-07-09 02:43:29] + ACCOUNTING_STARTTIME=1752021619
[2025-07-09 02:43:29] + echo 'Detecting resource accounting method available for the job.'
[2025-07-09 02:43:29] Detecting resource accounting method available for the job.
[2025-07-09 02:43:29] + JOB_ACCOUNTING=
[2025-07-09 02:43:29] + command -v arc-job-cgroup
[2025-07-09 02:43:29] + '[' -z '' ']'
[2025-07-09 02:43:29] + GNU_TIME=/usr/bin/time
[2025-07-09 02:43:29] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-07-09 02:43:29] Looking for /usr/bin/time tool for accounting measurements
[2025-07-09 02:43:29] + '[' '!' -z /usr/bin/time ']'
[2025-07-09 02:43:29] + /usr/bin/time --version
[2025-07-09 02:43:29] + echo 'GNU time found and will be used for job accounting.'
[2025-07-09 02:43:29] GNU time found and will be used for job accounting.
[2025-07-09 02:43:29] + JOB_ACCOUNTING=gnutime
[2025-07-09 02:43:29] + '[' -z gnutime ']'
[2025-07-09 02:43:29] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-07-09 02:43:29] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-07-09 02:43:29] + export GTAG=http://aipanda403.cern.ch/data/jobs/2025-07-05/BOINC_MCORE/6720606877.out
[2025-07-09 02:43:29] + GTAG=http://aipanda403.cern.ch/data/jobs/2025-07-05/BOINC_MCORE/6720606877.out
[2025-07-09 02:43:29] + export PILOT_NOKILL=YES
[2025-07-09 02:43:29] + PILOT_NOKILL=YES
[2025-07-09 02:43:29] + export GRID_GLOBAL_JOBID=oM6LDmS69r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmat9KDmujYFdn
[2025-07-09 02:43:29] + GRID_GLOBAL_JOBID=oM6LDmS69r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmat9KDmujYFdn
[2025-07-09 02:43:29] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/oM6LDmS69r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmat9KDmujYFdn
[2025-07-09 02:43:29] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/oM6LDmS69r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmat9KDmujYFdn
[2025-07-09 02:43:29] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-07-09 02:43:29] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-07-09 02:43:29] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-07-09 02:43:29] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-07-09 02:43:29] ++ pwd
[2025-07-09 02:43:29] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot8/slots/0
[2025-07-09 02:43:29] + RUNTIME_JOB_STDIN=/dev/null
[2025-07-09 02:43:29] ++ pwd
[2025-07-09 02:43:29] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot8/slots/0/log.45482040._002188.job.log.1
[2025-07-09 02:43:29] ++ pwd
[2025-07-09 02:43:29] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot8/slots/0/log.45482040._002188.job.log.1
[2025-07-09 02:43:29] ++ pwd
[2025-07-09 02:43:29] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot8/slots/0.diag
[2025-07-09 02:43:29] + '[' '!' -z '' ']'
[2025-07-09 02:43:29] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-07-09 02:43:29] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-07-09 02:43:29] + RUNTIME_FRONTEND_SEES_NODE=
[2025-07-09 02:43:29] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-07-09 02:43:29] + '[' '!' -z '' ']'
[2025-07-09 02:43:29] + '[' -z yes ']'
[2025-07-09 02:43:29] ++ pwd
[2025-07-09 02:43:29] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot8/slots/0/oM6LDmS69r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmat9KDmujYFdn.diag
[2025-07-09 02:43:29] + runtimeenvironments=
[2025-07-09 02:43:29] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-07-09 02:43:29] + RTE_function_0 1
[2025-07-09 02:43:29] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-07-09 02:43:29] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-07-09 02:43:29] + export BOINC_APP=ATLAS
[2025-07-09 02:43:29] + BOINC_APP=ATLAS
[2025-07-09 02:43:29] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-07-09 02:43:29] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-07-09 02:43:29] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-07-09 02:43:29] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-07-09 02:43:29] + '[' -z 1 ']'
[2025-07-09 02:43:29] + '[' 1 == 1 ']'
[2025-07-09 02:43:29] + shift
[2025-07-09 02:43:29] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot8/slots/0/
[2025-07-09 02:43:29] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot8/slots/0/
[2025-07-09 02:43:29] + '[' 0 -ne 0 ']'
[2025-07-09 02:43:29] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-07-09 02:43:29] + '[' -f /etc/os-release ']'
[2025-07-09 02:43:29] +++ cat /etc/os-release
[2025-07-09 02:43:29] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-07-09 02:43:29] +++ NAME='CentOS Linux'
[2025-07-09 02:43:29] +++ VERSION='7 (Core)'
[2025-07-09 02:43:29] +++ ID=centos
[2025-07-09 02:43:29] +++ ID_LIKE='rhel fedora'
[2025-07-09 02:43:29] +++ VERSION_ID=7
[2025-07-09 02:43:29] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-07-09 02:43:29] +++ ANSI_COLOR='0;31'
[2025-07-09 02:43:29] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-07-09 02:43:29] +++ HOME_URL=https://www.centos.org/
[2025-07-09 02:43:29] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-07-09 02:43:29] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-07-09 02:43:29] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-07-09 02:43:29] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-07-09 02:43:29] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-07-09 02:43:29] ++ echo 'CentOS Linux 7 (Core)'
[2025-07-09 02:43:29] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-07-09 02:43:29] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-07-09 02:43:29] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-07-09 02:43:29] + HOME=/scratch/boinc/var/slot8/slots/0
[2025-07-09 02:43:29] + export HOME
[2025-07-09 02:43:29] + cd /scratch/boinc/var/slot8/slots/0
[2025-07-09 02:43:29] + '[' '!' -z '' ']'
[2025-07-09 02:43:29] + '[' -z '' ']'
[2025-07-09 02:43:29] ++ /bin/hostname -f
[2025-07-09 02:43:29] + nodename=skurut17.grid.cesnet.cz
[2025-07-09 02:43:29] + echo nodename=skurut17.grid.cesnet.cz
[2025-07-09 02:43:29] + echo Processors=2
[2025-07-09 02:43:29] + echo Nodecount=1
[2025-07-09 02:43:29] + echo Benchmark=HEPSPEC:1.0
[2025-07-09 02:43:29] + executable=./runpilot2-wrapper.sh
[2025-07-09 02:43:29] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-07-09 02:43:29] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-07-09 02:43:29] ++ head -n 1
[2025-07-09 02:43:29] ++ tr -d '\0'
[2025-07-09 02:43:29] + line1='#!/bin/bash'
[2025-07-09 02:43:29] ++ echo '#!/bin/bash'
[2025-07-09 02:43:29] ++ sed -n 's/^#! *//p'
[2025-07-09 02:43:29] + shebang=/bin/bash
[2025-07-09 02:43:29] ++ echo /bin/bash
[2025-07-09 02:43:29] ++ awk '{print $1}'
[2025-07-09 02:43:29] + interpreter=/bin/bash
[2025-07-09 02:43:29] + '[' /bin/bash = /usr/bin/env ']'
[2025-07-09 02:43:29] + '[' x/bin/bash = x ']'
[2025-07-09 02:43:29] + type /bin/bash
[2025-07-09 02:43:29] + '[' xgnutime = xgnutime ']'
[2025-07-09 02:43:29] + /usr/bin/time -o /scratch/boinc/var/slot8/slots/0/oM6LDmS69r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmat9KDmujYFdn.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.4.12 -z -t --piloturl local --mute --container
[2025-07-09 02:43:29] + RESULT=2
[2025-07-09 02:43:29] + sed -i -e /nodename=/d /scratch/boinc/var/slot8/slots/0/oM6LDmS69r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmat9KDmujYFdn.diag
[2025-07-09 02:43:29] ++ grep domain_name init_data.xml
[2025-07-09 02:43:29] ++ awk -F '>' '{print $2}'
[2025-07-09 02:43:29] ++ awk -F '<' '{print $1}'
[2025-07-09 02:43:29] ++ sed -e 's# #_#g'
[2025-07-09 02:43:29] + hostname=skurut17.grid.cesnet.cz
[2025-07-09 02:43:29] ++ grep user_name init_data.xml
[2025-07-09 02:43:29] ++ awk -F '>' '{print $2}'
[2025-07-09 02:43:29] ++ awk -F '<' '{print $1}'
[2025-07-09 02:43:29] ++ sed -e 's# #_#g'
[2025-07-09 02:43:29] + username=praguelcg2
[2025-07-09 02:43:29] + nodename=praguelcg2@skurut17.grid.cesnet.cz
[2025-07-09 02:43:29] + echo nodename=praguelcg2@skurut17.grid.cesnet.cz
[2025-07-09 02:43:29] + '[' -n 4 ']'
[2025-07-09 02:43:29] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot8/slots/0/oM6LDmS69r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmat9KDmujYFdn.diag
[2025-07-09 02:43:29] + echo exitcode=2
[2025-07-09 02:43:29] + runtimeenvironments=
[2025-07-09 02:43:29] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-07-09 02:43:29] + RTE_function_0 2
[2025-07-09 02:43:29] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-07-09 02:43:29] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-07-09 02:43:29] + export BOINC_APP=ATLAS
[2025-07-09 02:43:29] + BOINC_APP=ATLAS
[2025-07-09 02:43:29] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-07-09 02:43:29] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-07-09 02:43:29] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-07-09 02:43:29] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-07-09 02:43:29] + '[' -z 2 ']'
[2025-07-09 02:43:29] + '[' 2 == 1 ']'
[2025-07-09 02:43:29] + '[' 0 -ne 0 ']'
[2025-07-09 02:43:29] + echo 'zip all output files'
[2025-07-09 02:43:29] + flist='*.diag '
[2025-07-09 02:43:29] + for f in ./heartbeat.json ./output.list ./log.45482040._002188.job.log.1 ./log.45482040._002188.job.log.1 ./gmlog/
[2025-07-09 02:43:29] + '[' -e ./heartbeat.json ']'
[2025-07-09 02:43:29] + flist='*.diag  ./heartbeat.json'
[2025-07-09 02:43:29] + for f in ./heartbeat.json ./output.list ./log.45482040._002188.job.log.1 ./log.45482040._002188.job.log.1 ./gmlog/
[2025-07-09 02:43:29] + '[' -e ./output.list ']'
[2025-07-09 02:43:29] + for f in ./heartbeat.json ./output.list ./log.45482040._002188.job.log.1 ./log.45482040._002188.job.log.1 ./gmlog/
[2025-07-09 02:43:29] + '[' -e ./log.45482040._002188.job.log.1 ']'
[2025-07-09 02:43:29] + flist='*.diag  ./heartbeat.json ./log.45482040._002188.job.log.1'
[2025-07-09 02:43:29] + for f in ./heartbeat.json ./output.list ./log.45482040._002188.job.log.1 ./log.45482040._002188.job.log.1 ./gmlog/
[2025-07-09 02:43:29] + '[' -e ./log.45482040._002188.job.log.1 ']'
[2025-07-09 02:43:29] + flist='*.diag  ./heartbeat.json ./log.45482040._002188.job.log.1 ./log.45482040._002188.job.log.1'
[2025-07-09 02:43:29] + for f in ./heartbeat.json ./output.list ./log.45482040._002188.job.log.1 ./log.45482040._002188.job.log.1 ./gmlog/
[2025-07-09 02:43:29] + '[' -e ./gmlog/ ']'
[2025-07-09 02:43:29] + '[' -f output.list ']'
[2025-07-09 02:43:29] + tar cvf result.tar.gz oM6LDmS69r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmat9KDmujYFdn.diag ./heartbeat.json ./log.45482040._002188.job.log.1 ./log.45482040._002188.job.log.1
[2025-07-09 02:43:29] + '[' xgnutime = xcgroup ']'
[2025-07-09 02:43:29] + '[' -n '' ']'
[2025-07-09 02:43:29] + '[' -n '' ']'
[2025-07-09 02:43:29] ++ date +%s
[2025-07-09 02:43:29] + ACCOUNTING_ENDTIME=1752021809
[2025-07-09 02:43:29] ++ date -d '1970-01-01 UTC 1752021619 seconds' +%Y%m%d%H%M%SZ
[2025-07-09 02:43:29] + echo LRMSStartTime=20250709024019Z
[2025-07-09 02:43:29] ++ date -d '1970-01-01 UTC 1752021809 seconds' +%Y%m%d%H%M%SZ
[2025-07-09 02:43:29] + echo LRMSEndTime=20250709024329Z
[2025-07-09 02:43:29] + echo walltime=190
[2025-07-09 02:43:29] + echo exitcode=2
[2025-07-09 02:43:29] + exit 2
[2025-07-09 02:43:29] ./PanDA_Pilot-6720606877/PoolFileCatalog.xml
[2025-07-09 02:43:29] ./PanDA_Pilot-6720606877/prmon.log
[2025-07-09 02:43:29] ./PanDA_Pilot-6720606877/pilotlog.txt
[2025-07-09 02:43:29] ./PanDA_Pilot-6720606877/log.EVNTtoHITS
[2025-07-09 02:43:29] ./runtime_log.err
[2025-07-09 02:43:29] ./pilotlog.txt
[2025-07-09 02:43:29] ./log.45482040._002188.job.log.1
[2025-07-09 02:43:29] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-07-09 02:43:29] ./pilot3/pilot/util/loggingsupport.py
[2025-07-09 02:43:29] ./pilot3/pilot/util/realtimelogger.py
[2025-07-09 02:43:29] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-07-09 02:43:29] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-07-09 02:43:29] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-07-09 02:43:29] ./runtime_log
03:24:13 (1560176): wrapper (7.7.26015): starting
03:24:13 (1560176): wrapper: running run_atlas (--nthreads 4)
[2025-07-09 03:24:13] Arguments: --nthreads 4
[2025-07-09 03:24:13] Threads: 4
[2025-07-09 03:24:13] This job has been restarted, cleaning up previous attempt
[2025-07-09 03:24:13] Checking for CVMFS
[2025-07-09 03:24:13] No cvmfs_config command found, will try listing directly
[2025-07-09 03:24:13] CVMFS is ok
[2025-07-09 03:24:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-09 03:24:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-09 03:24:13] Further information can be found at the LHC@home message board.
[2025-07-09 03:24:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-09 03:24:13] Checking for apptainer binary...
[2025-07-09 03:24:13] which: no apptainer in ((null))
[2025-07-09 03:24:13] apptainer is not installed, using version from CVMFS
[2025-07-09 03:24:13] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-09 03:24:14] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot8/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2025-07-09 03:24:14] apptainer works
[2025-07-09 03:24:14] Set ATHENA_PROC_NUMBER=4
[2025-07-09 03:24:14] Set ATHENA_CORE_NUMBER=4
[2025-07-09 03:24:14] Starting ATLAS job with PandaID=6720606877
[2025-07-09 03:24:14] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot8/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
11:32:26 (3948453): wrapper (7.7.26015): starting
11:32:26 (3948453): wrapper: running run_atlas (--nthreads 4)
[2025-07-09 11:32:26] Arguments: --nthreads 4
[2025-07-09 11:32:26] Threads: 4
[2025-07-09 11:32:26] This job has been restarted, cleaning up previous attempt
[2025-07-09 11:32:26] Checking for CVMFS
[2025-07-09 11:32:26] No cvmfs_config command found, will try listing directly
[2025-07-09 11:32:26] CVMFS is ok
[2025-07-09 11:32:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-09 11:32:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-09 11:32:26] Further information can be found at the LHC@home message board.
[2025-07-09 11:32:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-09 11:32:26] Checking for apptainer binary...
[2025-07-09 11:32:26] which: no apptainer in ((null))
[2025-07-09 11:32:26] apptainer is not installed, using version from CVMFS
[2025-07-09 11:32:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-09 11:32:27] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot8/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2025-07-09 11:32:27] apptainer works
[2025-07-09 11:32:27] Set ATHENA_PROC_NUMBER=4
[2025-07-09 11:32:27] Set ATHENA_CORE_NUMBER=4
[2025-07-09 11:32:27] Starting ATLAS job with PandaID=6720606877
[2025-07-09 11:32:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot8/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:22:27 (2872356): wrapper (7.7.26015): starting
07:22:27 (2872356): wrapper: running run_atlas (--nthreads 4)
[2025-07-13 07:22:27] Arguments: --nthreads 4
[2025-07-13 07:22:27] Threads: 4
[2025-07-13 07:22:27] This job has been restarted, cleaning up previous attempt
[2025-07-13 07:22:27] Checking for CVMFS
[2025-07-13 07:22:27] No cvmfs_config command found, will try listing directly
[2025-07-13 07:22:27] CVMFS is ok
[2025-07-13 07:22:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-13 07:22:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-13 07:22:27] Further information can be found at the LHC@home message board.
[2025-07-13 07:22:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-13 07:22:27] Checking for apptainer binary...
[2025-07-13 07:22:27] which: no apptainer in ((null))
[2025-07-13 07:22:27] apptainer is not installed, using version from CVMFS
[2025-07-13 07:22:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-13 07:22:27] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot8/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2025-07-13 07:22:27] apptainer works
[2025-07-13 07:22:27] Set ATHENA_PROC_NUMBER=4
[2025-07-13 07:22:27] Set ATHENA_CORE_NUMBER=4
[2025-07-13 07:22:27] Starting ATLAS job with PandaID=6720606877
[2025-07-13 07:22:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot8/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-13 07:25:41] Job failed
[2025-07-13 07:25:41] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot8/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-07-13 07:25:41] ++ pwd
[2025-07-13 07:25:41] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot8/slots/0/
[2025-07-13 07:25:41] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot8/slots/0/
[2025-07-13 07:25:41] + mv ATLAS.root_0 EVNT.45482038._000088.pool.root.1
[2025-07-13 07:25:41] mv: 'ATLAS.root_0' and 'EVNT.45482038._000088.pool.root.1' are the same file
[2025-07-13 07:25:41] + tar --strip-components=5 -xvf input.tar.gz
[2025-07-13 07:25:41] + umask 077
[2025-07-13 07:25:41] ++ date +%s
[2025-07-13 07:25:41] + ACCOUNTING_STARTTIME=1752384147
[2025-07-13 07:25:41] + echo 'Detecting resource accounting method available for the job.'
[2025-07-13 07:25:41] Detecting resource accounting method available for the job.
[2025-07-13 07:25:41] + JOB_ACCOUNTING=
[2025-07-13 07:25:41] + command -v arc-job-cgroup
[2025-07-13 07:25:41] + '[' -z '' ']'
[2025-07-13 07:25:41] + GNU_TIME=/usr/bin/time
[2025-07-13 07:25:41] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-07-13 07:25:41] Looking for /usr/bin/time tool for accounting measurements
[2025-07-13 07:25:41] + '[' '!' -z /usr/bin/time ']'
[2025-07-13 07:25:41] + /usr/bin/time --version
[2025-07-13 07:25:41] + echo 'GNU time found and will be used for job accounting.'
[2025-07-13 07:25:41] GNU time found and will be used for job accounting.
[2025-07-13 07:25:41] + JOB_ACCOUNTING=gnutime
[2025-07-13 07:25:41] + '[' -z gnutime ']'
[2025-07-13 07:25:41] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-07-13 07:25:41] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-07-13 07:25:41] + export GTAG=http://aipanda403.cern.ch/data/jobs/2025-07-05/BOINC_MCORE/6720606877.out
[2025-07-13 07:25:41] + GTAG=http://aipanda403.cern.ch/data/jobs/2025-07-05/BOINC_MCORE/6720606877.out
[2025-07-13 07:25:41] + export PILOT_NOKILL=YES
[2025-07-13 07:25:41] + PILOT_NOKILL=YES
[2025-07-13 07:25:41] + export GRID_GLOBAL_JOBID=oM6LDmS69r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmat9KDmujYFdn
[2025-07-13 07:25:41] + GRID_GLOBAL_JOBID=oM6LDmS69r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmat9KDmujYFdn
[2025-07-13 07:25:41] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/oM6LDmS69r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmat9KDmujYFdn
[2025-07-13 07:25:41] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/oM6LDmS69r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmat9KDmujYFdn
[2025-07-13 07:25:41] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-07-13 07:25:41] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-07-13 07:25:41] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-07-13 07:25:41] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-07-13 07:25:41] ++ pwd
[2025-07-13 07:25:41] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot8/slots/0
[2025-07-13 07:25:41] + RUNTIME_JOB_STDIN=/dev/null
[2025-07-13 07:25:41] ++ pwd
[2025-07-13 07:25:41] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot8/slots/0/log.45482040._002188.job.log.1
[2025-07-13 07:25:41] ++ pwd
[2025-07-13 07:25:41] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot8/slots/0/log.45482040._002188.job.log.1
[2025-07-13 07:25:41] ++ pwd
[2025-07-13 07:25:41] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot8/slots/0.diag
[2025-07-13 07:25:41] + '[' '!' -z '' ']'
[2025-07-13 07:25:41] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-07-13 07:25:41] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-07-13 07:25:41] + RUNTIME_FRONTEND_SEES_NODE=
[2025-07-13 07:25:41] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-07-13 07:25:41] + '[' '!' -z '' ']'
[2025-07-13 07:25:41] + '[' -z yes ']'
[2025-07-13 07:25:41] ++ pwd
[2025-07-13 07:25:41] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot8/slots/0/oM6LDmS69r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmat9KDmujYFdn.diag
[2025-07-13 07:25:41] + runtimeenvironments=
[2025-07-13 07:25:41] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-07-13 07:25:41] + RTE_function_0 1
[2025-07-13 07:25:41] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-07-13 07:25:41] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-07-13 07:25:41] + export BOINC_APP=ATLAS
[2025-07-13 07:25:41] + BOINC_APP=ATLAS
[2025-07-13 07:25:41] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-07-13 07:25:41] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-07-13 07:25:41] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-07-13 07:25:41] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-07-13 07:25:41] + '[' -z 1 ']'
[2025-07-13 07:25:41] + '[' 1 == 1 ']'
[2025-07-13 07:25:41] + shift
[2025-07-13 07:25:41] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot8/slots/0/
[2025-07-13 07:25:41] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot8/slots/0/
[2025-07-13 07:25:41] + '[' 0 -ne 0 ']'
[2025-07-13 07:25:41] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-07-13 07:25:41] + '[' -f /etc/os-release ']'
[2025-07-13 07:25:41] +++ cat /etc/os-release
[2025-07-13 07:25:41] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-07-13 07:25:41] +++ NAME='CentOS Linux'
[2025-07-13 07:25:41] +++ VERSION='7 (Core)'
[2025-07-13 07:25:41] +++ ID=centos
[2025-07-13 07:25:41] +++ ID_LIKE='rhel fedora'
[2025-07-13 07:25:41] +++ VERSION_ID=7
[2025-07-13 07:25:41] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-07-13 07:25:41] +++ ANSI_COLOR='0;31'
[2025-07-13 07:25:41] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-07-13 07:25:41] +++ HOME_URL=https://www.centos.org/
[2025-07-13 07:25:41] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-07-13 07:25:41] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-07-13 07:25:41] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-07-13 07:25:41] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-07-13 07:25:41] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-07-13 07:25:41] ++ echo 'CentOS Linux 7 (Core)'
[2025-07-13 07:25:41] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-07-13 07:25:41] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-07-13 07:25:41] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-07-13 07:25:41] + HOME=/scratch/boinc/var/slot8/slots/0
[2025-07-13 07:25:41] + export HOME
[2025-07-13 07:25:41] + cd /scratch/boinc/var/slot8/slots/0
[2025-07-13 07:25:41] + '[' '!' -z '' ']'
[2025-07-13 07:25:41] + '[' -z '' ']'
[2025-07-13 07:25:41] ++ /bin/hostname -f
[2025-07-13 07:25:41] + nodename=skurut17.grid.cesnet.cz
[2025-07-13 07:25:41] + echo nodename=skurut17.grid.cesnet.cz
[2025-07-13 07:25:41] + echo Processors=2
[2025-07-13 07:25:41] + echo Nodecount=1
[2025-07-13 07:25:41] + echo Benchmark=HEPSPEC:1.0
[2025-07-13 07:25:41] + executable=./runpilot2-wrapper.sh
[2025-07-13 07:25:41] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-07-13 07:25:41] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-07-13 07:25:41] ++ head -n 1
[2025-07-13 07:25:41] ++ tr -d '\0'
[2025-07-13 07:25:41] + line1='#!/bin/bash'
[2025-07-13 07:25:41] ++ echo '#!/bin/bash'
[2025-07-13 07:25:41] ++ sed -n 's/^#! *//p'
[2025-07-13 07:25:41] + shebang=/bin/bash
[2025-07-13 07:25:41] ++ echo /bin/bash
[2025-07-13 07:25:41] ++ awk '{print $1}'
[2025-07-13 07:25:41] + interpreter=/bin/bash
[2025-07-13 07:25:41] + '[' /bin/bash = /usr/bin/env ']'
[2025-07-13 07:25:41] + '[' x/bin/bash = x ']'
[2025-07-13 07:25:41] + type /bin/bash
[2025-07-13 07:25:41] + '[' xgnutime = xgnutime ']'
[2025-07-13 07:25:41] + /usr/bin/time -o /scratch/boinc/var/slot8/slots/0/oM6LDmS69r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmat9KDmujYFdn.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.4.12 -z -t --piloturl local --mute --container
[2025-07-13 07:25:41] + RESULT=2
[2025-07-13 07:25:41] + sed -i -e /nodename=/d /scratch/boinc/var/slot8/slots/0/oM6LDmS69r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmat9KDmujYFdn.diag
[2025-07-13 07:25:41] ++ grep domain_name init_data.xml
[2025-07-13 07:25:41] ++ awk -F '>' '{print $2}'
[2025-07-13 07:25:41] ++ awk -F '<' '{print $1}'
[2025-07-13 07:25:41] ++ sed -e 's# #_#g'
[2025-07-13 07:25:41] + hostname=skurut17.grid.cesnet.cz
[2025-07-13 07:25:41] ++ grep user_name init_data.xml
[2025-07-13 07:25:41] ++ awk -F '>' '{print $2}'
[2025-07-13 07:25:41] ++ awk -F '<' '{print $1}'
[2025-07-13 07:25:41] ++ sed -e 's# #_#g'
[2025-07-13 07:25:41] + username=praguelcg2
[2025-07-13 07:25:41] + nodename=praguelcg2@skurut17.grid.cesnet.cz
[2025-07-13 07:25:41] + echo nodename=praguelcg2@skurut17.grid.cesnet.cz
[2025-07-13 07:25:41] + '[' -n 4 ']'
[2025-07-13 07:25:41] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot8/slots/0/oM6LDmS69r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmat9KDmujYFdn.diag
[2025-07-13 07:25:41] + echo exitcode=2
[2025-07-13 07:25:41] + runtimeenvironments=
[2025-07-13 07:25:41] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-07-13 07:25:41] + RTE_function_0 2
[2025-07-13 07:25:41] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-07-13 07:25:41] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-07-13 07:25:41] + export BOINC_APP=ATLAS
[2025-07-13 07:25:41] + BOINC_APP=ATLAS
[2025-07-13 07:25:41] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-07-13 07:25:41] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-07-13 07:25:41] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-07-13 07:25:41] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-07-13 07:25:41] + '[' -z 2 ']'
[2025-07-13 07:25:41] + '[' 2 == 1 ']'
[2025-07-13 07:25:41] + '[' 0 -ne 0 ']'
[2025-07-13 07:25:41] + echo 'zip all output files'
[2025-07-13 07:25:41] + flist='*.diag '
[2025-07-13 07:25:41] + for f in ./heartbeat.json ./output.list ./log.45482040._002188.job.log.1 ./log.45482040._002188.job.log.1 ./gmlog/
[2025-07-13 07:25:41] + '[' -e ./heartbeat.json ']'
[2025-07-13 07:25:41] + flist='*.diag  ./heartbeat.json'
[2025-07-13 07:25:41] + for f in ./heartbeat.json ./output.list ./log.45482040._002188.job.log.1 ./log.45482040._002188.job.log.1 ./gmlog/
[2025-07-13 07:25:41] + '[' -e ./output.list ']'
[2025-07-13 07:25:41] + for f in ./heartbeat.json ./output.list ./log.45482040._002188.job.log.1 ./log.45482040._002188.job.log.1 ./gmlog/
[2025-07-13 07:25:41] + '[' -e ./log.45482040._002188.job.log.1 ']'
[2025-07-13 07:25:41] + flist='*.diag  ./heartbeat.json ./log.45482040._002188.job.log.1'
[2025-07-13 07:25:41] + for f in ./heartbeat.json ./output.list ./log.45482040._002188.job.log.1 ./log.45482040._002188.job.log.1 ./gmlog/
[2025-07-13 07:25:41] + '[' -e ./log.45482040._002188.job.log.1 ']'
[2025-07-13 07:25:41] + flist='*.diag  ./heartbeat.json ./log.45482040._002188.job.log.1 ./log.45482040._002188.job.log.1'
[2025-07-13 07:25:41] + for f in ./heartbeat.json ./output.list ./log.45482040._002188.job.log.1 ./log.45482040._002188.job.log.1 ./gmlog/
[2025-07-13 07:25:41] + '[' -e ./gmlog/ ']'
[2025-07-13 07:25:41] + '[' -f output.list ']'
[2025-07-13 07:25:41] + tar cvf result.tar.gz oM6LDmS69r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmat9KDmujYFdn.diag ./heartbeat.json ./log.45482040._002188.job.log.1 ./log.45482040._002188.job.log.1
[2025-07-13 07:25:41] + '[' xgnutime = xcgroup ']'
[2025-07-13 07:25:41] + '[' -n '' ']'
[2025-07-13 07:25:41] + '[' -n '' ']'
[2025-07-13 07:25:41] ++ date +%s
[2025-07-13 07:25:41] + ACCOUNTING_ENDTIME=1752384341
[2025-07-13 07:25:41] ++ date -d '1970-01-01 UTC 1752384147 seconds' +%Y%m%d%H%M%SZ
[2025-07-13 07:25:41] + echo LRMSStartTime=20250713072227Z
[2025-07-13 07:25:41] ++ date -d '1970-01-01 UTC 1752384341 seconds' +%Y%m%d%H%M%SZ
[2025-07-13 07:25:41] + echo LRMSEndTime=20250713072541Z
[2025-07-13 07:25:41] + echo walltime=194
[2025-07-13 07:25:41] + echo exitcode=2
[2025-07-13 07:25:41] + exit 2
[2025-07-13 07:25:41] ./PanDA_Pilot-6720606877/PoolFileCatalog.xml
[2025-07-13 07:25:41] ./PanDA_Pilot-6720606877/prmon.log
[2025-07-13 07:25:41] ./PanDA_Pilot-6720606877/pilotlog.txt
[2025-07-13 07:25:41] ./PanDA_Pilot-6720606877/log.EVNTtoHITS
[2025-07-13 07:25:41] ./runtime_log.err
[2025-07-13 07:25:41] ./pilotlog.txt
[2025-07-13 07:25:41] ./log.45482040._002188.job.log.1
[2025-07-13 07:25:41] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-07-13 07:25:41] ./pilot3/pilot/util/loggingsupport.py
[2025-07-13 07:25:41] ./pilot3/pilot/util/realtimelogger.py
[2025-07-13 07:25:41] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-07-13 07:25:41] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-07-13 07:25:41] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-07-13 07:25:41] ./runtime_log
07:54:20 (2907498): wrapper (7.7.26015): starting
07:54:20 (2907498): wrapper: running run_atlas (--nthreads 4)
[2025-07-13 07:54:20] Arguments: --nthreads 4
[2025-07-13 07:54:20] Threads: 4
[2025-07-13 07:54:20] This job has been restarted, cleaning up previous attempt
[2025-07-13 07:54:20] Checking for CVMFS
[2025-07-13 07:54:20] No cvmfs_config command found, will try listing directly
[2025-07-13 07:54:20] CVMFS is ok
[2025-07-13 07:54:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-13 07:54:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-13 07:54:20] Further information can be found at the LHC@home message board.
[2025-07-13 07:54:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-13 07:54:20] Checking for apptainer binary...
[2025-07-13 07:54:20] which: no apptainer in ((null))
[2025-07-13 07:54:20] apptainer is not installed, using version from CVMFS
[2025-07-13 07:54:20] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-13 07:54:20] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot8/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2025-07-13 07:54:20] apptainer works
[2025-07-13 07:54:20] Set ATHENA_PROC_NUMBER=4
[2025-07-13 07:54:20] Set ATHENA_CORE_NUMBER=4
[2025-07-13 07:54:20] Starting ATLAS job with PandaID=6720606877
[2025-07-13 07:54:20] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot8/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
09:03:58 (2969633): wrapper (7.7.26015): starting
09:03:58 (2969633): wrapper: running run_atlas (--nthreads 4)
[2025-07-13 09:03:58] Arguments: --nthreads 4
[2025-07-13 09:03:58] Threads: 4
[2025-07-13 09:03:58] This job has been restarted, cleaning up previous attempt
[2025-07-13 09:03:58] Checking for CVMFS
[2025-07-13 09:03:58] No cvmfs_config command found, will try listing directly
[2025-07-13 09:03:59] CVMFS is ok
[2025-07-13 09:03:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-13 09:03:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-13 09:03:59] Further information can be found at the LHC@home message board.
[2025-07-13 09:03:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-13 09:03:59] Checking for apptainer binary...
[2025-07-13 09:03:59] which: no apptainer in ((null))
[2025-07-13 09:03:59] apptainer is not installed, using version from CVMFS
[2025-07-13 09:03:59] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-13 09:03:59] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot8/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2025-07-13 09:03:59] apptainer works
[2025-07-13 09:03:59] Set ATHENA_PROC_NUMBER=4
[2025-07-13 09:03:59] Set ATHENA_CORE_NUMBER=4
[2025-07-13 09:03:59] Starting ATLAS job with PandaID=6720606877
[2025-07-13 09:03:59] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot8/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
10:30:38 (3032986): wrapper (7.7.26015): starting
10:30:38 (3032986): wrapper: running run_atlas (--nthreads 4)
[2025-07-13 10:30:38] Arguments: --nthreads 4
[2025-07-13 10:30:38] Threads: 4
[2025-07-13 10:30:38] This job has been restarted, cleaning up previous attempt
[2025-07-13 10:30:38] Checking for CVMFS
[2025-07-13 10:30:38] No cvmfs_config command found, will try listing directly
[2025-07-13 10:30:38] CVMFS is ok
[2025-07-13 10:30:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-13 10:30:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-13 10:30:38] Further information can be found at the LHC@home message board.
[2025-07-13 10:30:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-13 10:30:38] Checking for apptainer binary...
[2025-07-13 10:30:38] which: no apptainer in ((null))
[2025-07-13 10:30:38] apptainer is not installed, using version from CVMFS
[2025-07-13 10:30:38] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-13 10:30:38] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot8/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2025-07-13 10:30:38] apptainer works
[2025-07-13 10:30:38] Set ATHENA_PROC_NUMBER=4
[2025-07-13 10:30:38] Set ATHENA_CORE_NUMBER=4
[2025-07-13 10:30:39] Starting ATLAS job with PandaID=6720606877
[2025-07-13 10:30:39] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot8/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-13 10:33:45] Job failed
[2025-07-13 10:33:45] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot8/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-07-13 10:33:45] ++ pwd
[2025-07-13 10:33:45] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot8/slots/0/
[2025-07-13 10:33:45] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot8/slots/0/
[2025-07-13 10:33:45] + mv ATLAS.root_0 EVNT.45482038._000088.pool.root.1
[2025-07-13 10:33:45] mv: 'ATLAS.root_0' and 'EVNT.45482038._000088.pool.root.1' are the same file
[2025-07-13 10:33:45] + tar --strip-components=5 -xvf input.tar.gz
[2025-07-13 10:33:45] + umask 077
[2025-07-13 10:33:45] ++ date +%s
[2025-07-13 10:33:45] + ACCOUNTING_STARTTIME=1752395439
[2025-07-13 10:33:45] + echo 'Detecting resource accounting method available for the job.'
[2025-07-13 10:33:45] Detecting resource accounting method available for the job.
[2025-07-13 10:33:45] + JOB_ACCOUNTING=
[2025-07-13 10:33:45] + command -v arc-job-cgroup
[2025-07-13 10:33:45] + '[' -z '' ']'
[2025-07-13 10:33:45] + GNU_TIME=/usr/bin/time
[2025-07-13 10:33:45] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-07-13 10:33:45] Looking for /usr/bin/time tool for accounting measurements
[2025-07-13 10:33:45] + '[' '!' -z /usr/bin/time ']'
[2025-07-13 10:33:45] + /usr/bin/time --version
[2025-07-13 10:33:45] + echo 'GNU time found and will be used for job accounting.'
[2025-07-13 10:33:45] GNU time found and will be used for job accounting.
[2025-07-13 10:33:45] + JOB_ACCOUNTING=gnutime
[2025-07-13 10:33:45] + '[' -z gnutime ']'
[2025-07-13 10:33:45] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-07-13 10:33:45] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-07-13 10:33:45] + export GTAG=http://aipanda403.cern.ch/data/jobs/2025-07-05/BOINC_MCORE/6720606877.out
[2025-07-13 10:33:45] + GTAG=http://aipanda403.cern.ch/data/jobs/2025-07-05/BOINC_MCORE/6720606877.out
[2025-07-13 10:33:45] + export PILOT_NOKILL=YES
[2025-07-13 10:33:45] + PILOT_NOKILL=YES
[2025-07-13 10:33:45] + export GRID_GLOBAL_JOBID=oM6LDmS69r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmat9KDmujYFdn
[2025-07-13 10:33:45] + GRID_GLOBAL_JOBID=oM6LDmS69r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmat9KDmujYFdn
[2025-07-13 10:33:45] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/oM6LDmS69r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmat9KDmujYFdn
[2025-07-13 10:33:45] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/oM6LDmS69r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmat9KDmujYFdn
[2025-07-13 10:33:45] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-07-13 10:33:45] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-07-13 10:33:45] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-07-13 10:33:45] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-07-13 10:33:45] ++ pwd
[2025-07-13 10:33:45] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot8/slots/0
[2025-07-13 10:33:45] + RUNTIME_JOB_STDIN=/dev/null
[2025-07-13 10:33:45] ++ pwd
[2025-07-13 10:33:45] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot8/slots/0/log.45482040._002188.job.log.1
[2025-07-13 10:33:45] ++ pwd
[2025-07-13 10:33:45] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot8/slots/0/log.45482040._002188.job.log.1
[2025-07-13 10:33:45] ++ pwd
[2025-07-13 10:33:45] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot8/slots/0.diag
[2025-07-13 10:33:45] + '[' '!' -z '' ']'
[2025-07-13 10:33:45] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-07-13 10:33:45] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-07-13 10:33:45] + RUNTIME_FRONTEND_SEES_NODE=
[2025-07-13 10:33:45] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-07-13 10:33:45] + '[' '!' -z '' ']'
[2025-07-13 10:33:45] + '[' -z yes ']'
[2025-07-13 10:33:45] ++ pwd
[2025-07-13 10:33:45] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot8/slots/0/oM6LDmS69r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmat9KDmujYFdn.diag
[2025-07-13 10:33:45] + runtimeenvironments=
[2025-07-13 10:33:45] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-07-13 10:33:45] + RTE_function_0 1
[2025-07-13 10:33:45] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-07-13 10:33:45] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-07-13 10:33:45] + export BOINC_APP=ATLAS
[2025-07-13 10:33:45] + BOINC_APP=ATLAS
[2025-07-13 10:33:45] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-07-13 10:33:45] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-07-13 10:33:45] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-07-13 10:33:45] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-07-13 10:33:45] + '[' -z 1 ']'
[2025-07-13 10:33:45] + '[' 1 == 1 ']'
[2025-07-13 10:33:45] + shift
[2025-07-13 10:33:45] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot8/slots/0/
[2025-07-13 10:33:45] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot8/slots/0/
[2025-07-13 10:33:45] + '[' 0 -ne 0 ']'
[2025-07-13 10:33:45] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-07-13 10:33:45] + '[' -f /etc/os-release ']'
[2025-07-13 10:33:45] +++ cat /etc/os-release
[2025-07-13 10:33:45] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-07-13 10:33:45] +++ NAME='CentOS Linux'
[2025-07-13 10:33:45] +++ VERSION='7 (Core)'
[2025-07-13 10:33:45] +++ ID=centos
[2025-07-13 10:33:45] +++ ID_LIKE='rhel fedora'
[2025-07-13 10:33:45] +++ VERSION_ID=7
[2025-07-13 10:33:45] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-07-13 10:33:45] +++ ANSI_COLOR='0;31'
[2025-07-13 10:33:45] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-07-13 10:33:45] +++ HOME_URL=https://www.centos.org/
[2025-07-13 10:33:45] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-07-13 10:33:45] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-07-13 10:33:45] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-07-13 10:33:45] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-07-13 10:33:45] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-07-13 10:33:45] ++ echo 'CentOS Linux 7 (Core)'
[2025-07-13 10:33:45] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-07-13 10:33:45] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-07-13 10:33:45] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-07-13 10:33:45] + HOME=/scratch/boinc/var/slot8/slots/0
[2025-07-13 10:33:45] + export HOME
[2025-07-13 10:33:45] + cd /scratch/boinc/var/slot8/slots/0
[2025-07-13 10:33:45] + '[' '!' -z '' ']'
[2025-07-13 10:33:45] + '[' -z '' ']'
[2025-07-13 10:33:45] ++ /bin/hostname -f
[2025-07-13 10:33:45] + nodename=skurut17.grid.cesnet.cz
[2025-07-13 10:33:45] + echo nodename=skurut17.grid.cesnet.cz
[2025-07-13 10:33:45] + echo Processors=2
[2025-07-13 10:33:45] + echo Nodecount=1
[2025-07-13 10:33:45] + echo Benchmark=HEPSPEC:1.0
[2025-07-13 10:33:45] + executable=./runpilot2-wrapper.sh
[2025-07-13 10:33:45] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-07-13 10:33:45] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-07-13 10:33:45] ++ head -n 1
[2025-07-13 10:33:45] ++ tr -d '\0'
[2025-07-13 10:33:45] + line1='#!/bin/bash'
[2025-07-13 10:33:45] ++ echo '#!/bin/bash'
[2025-07-13 10:33:45] ++ sed -n 's/^#! *//p'
[2025-07-13 10:33:45] + shebang=/bin/bash
[2025-07-13 10:33:45] ++ echo /bin/bash
[2025-07-13 10:33:45] ++ awk '{print $1}'
[2025-07-13 10:33:45] + interpreter=/bin/bash
[2025-07-13 10:33:45] + '[' /bin/bash = /usr/bin/env ']'
[2025-07-13 10:33:45] + '[' x/bin/bash = x ']'
[2025-07-13 10:33:45] + type /bin/bash
[2025-07-13 10:33:45] + '[' xgnutime = xgnutime ']'
[2025-07-13 10:33:45] + /usr/bin/time -o /scratch/boinc/var/slot8/slots/0/oM6LDmS69r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmat9KDmujYFdn.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.4.12 -z -t --piloturl local --mute --container
[2025-07-13 10:33:45] + RESULT=2
[2025-07-13 10:33:45] + sed -i -e /nodename=/d /scratch/boinc/var/slot8/slots/0/oM6LDmS69r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmat9KDmujYFdn.diag
[2025-07-13 10:33:45] ++ grep domain_name init_data.xml
[2025-07-13 10:33:45] ++ awk -F '>' '{print $2}'
[2025-07-13 10:33:45] ++ awk -F '<' '{print $1}'
[2025-07-13 10:33:45] ++ sed -e 's# #_#g'
[2025-07-13 10:33:45] + hostname=skurut17.grid.cesnet.cz
[2025-07-13 10:33:45] ++ grep user_name init_data.xml
[2025-07-13 10:33:45] ++ awk -F '>' '{print $2}'
[2025-07-13 10:33:45] ++ awk -F '<' '{print $1}'
[2025-07-13 10:33:45] ++ sed -e 's# #_#g'
[2025-07-13 10:33:45] + username=praguelcg2
[2025-07-13 10:33:45] + nodename=praguelcg2@skurut17.grid.cesnet.cz
[2025-07-13 10:33:45] + echo nodename=praguelcg2@skurut17.grid.cesnet.cz
[2025-07-13 10:33:45] + '[' -n 4 ']'
[2025-07-13 10:33:45] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot8/slots/0/oM6LDmS69r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmat9KDmujYFdn.diag
[2025-07-13 10:33:45] + echo exitcode=2
[2025-07-13 10:33:45] + runtimeenvironments=
[2025-07-13 10:33:45] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-07-13 10:33:45] + RTE_function_0 2
[2025-07-13 10:33:45] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-07-13 10:33:45] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-07-13 10:33:45] + export BOINC_APP=ATLAS
[2025-07-13 10:33:45] + BOINC_APP=ATLAS
[2025-07-13 10:33:45] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-07-13 10:33:45] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-07-13 10:33:45] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-07-13 10:33:45] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-07-13 10:33:45] + '[' -z 2 ']'
[2025-07-13 10:33:45] + '[' 2 == 1 ']'
[2025-07-13 10:33:45] + '[' 0 -ne 0 ']'
[2025-07-13 10:33:45] + echo 'zip all output files'
[2025-07-13 10:33:45] + flist='*.diag '
[2025-07-13 10:33:45] + for f in ./heartbeat.json ./output.list ./log.45482040._002188.job.log.1 ./log.45482040._002188.job.log.1 ./gmlog/
[2025-07-13 10:33:45] + '[' -e ./heartbeat.json ']'
[2025-07-13 10:33:45] + flist='*.diag  ./heartbeat.json'
[2025-07-13 10:33:45] + for f in ./heartbeat.json ./output.list ./log.45482040._002188.job.log.1 ./log.45482040._002188.job.log.1 ./gmlog/
[2025-07-13 10:33:45] + '[' -e ./output.list ']'
[2025-07-13 10:33:45] + for f in ./heartbeat.json ./output.list ./log.45482040._002188.job.log.1 ./log.45482040._002188.job.log.1 ./gmlog/
[2025-07-13 10:33:45] + '[' -e ./log.45482040._002188.job.log.1 ']'
[2025-07-13 10:33:45] + flist='*.diag  ./heartbeat.json ./log.45482040._002188.job.log.1'
[2025-07-13 10:33:45] + for f in ./heartbeat.json ./output.list ./log.45482040._002188.job.log.1 ./log.45482040._002188.job.log.1 ./gmlog/
[2025-07-13 10:33:45] + '[' -e ./log.45482040._002188.job.log.1 ']'
[2025-07-13 10:33:45] + flist='*.diag  ./heartbeat.json ./log.45482040._002188.job.log.1 ./log.45482040._002188.job.log.1'
[2025-07-13 10:33:45] + for f in ./heartbeat.json ./output.list ./log.45482040._002188.job.log.1 ./log.45482040._002188.job.log.1 ./gmlog/
[2025-07-13 10:33:45] + '[' -e ./gmlog/ ']'
[2025-07-13 10:33:45] + '[' -f output.list ']'
[2025-07-13 10:33:45] + tar cvf result.tar.gz oM6LDmS69r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmat9KDmujYFdn.diag ./heartbeat.json ./log.45482040._002188.job.log.1 ./log.45482040._002188.job.log.1
[2025-07-13 10:33:45] + '[' xgnutime = xcgroup ']'
[2025-07-13 10:33:45] + '[' -n '' ']'
[2025-07-13 10:33:45] + '[' -n '' ']'
[2025-07-13 10:33:45] ++ date +%s
[2025-07-13 10:33:45] + ACCOUNTING_ENDTIME=1752395625
[2025-07-13 10:33:45] ++ date -d '1970-01-01 UTC 1752395439 seconds' +%Y%m%d%H%M%SZ
[2025-07-13 10:33:45] + echo LRMSStartTime=20250713103039Z
[2025-07-13 10:33:45] ++ date -d '1970-01-01 UTC 1752395625 seconds' +%Y%m%d%H%M%SZ
[2025-07-13 10:33:45] + echo LRMSEndTime=20250713103345Z
[2025-07-13 10:33:45] + echo walltime=186
[2025-07-13 10:33:45] + echo exitcode=2
[2025-07-13 10:33:45] + exit 2
[2025-07-13 10:33:45] ./PanDA_Pilot-6720606877/PoolFileCatalog.xml
[2025-07-13 10:33:45] ./PanDA_Pilot-6720606877/prmon.log
[2025-07-13 10:33:45] ./PanDA_Pilot-6720606877/pilotlog.txt
[2025-07-13 10:33:45] ./PanDA_Pilot-6720606877/log.EVNTtoHITS
[2025-07-13 10:33:45] ./runtime_log.err
[2025-07-13 10:33:45] ./pilotlog.txt
[2025-07-13 10:33:45] ./log.45482040._002188.job.log.1
[2025-07-13 10:33:45] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-07-13 10:33:45] ./pilot3/pilot/util/loggingsupport.py
[2025-07-13 10:33:45] ./pilot3/pilot/util/realtimelogger.py
[2025-07-13 10:33:45] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-07-13 10:33:45] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-07-13 10:33:45] ./pilot3/pilot/uti

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