Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:23:44 (2612): wrapper (7.7.26015): starting
04:23:44 (2612): wrapper: running run_atlas (--nthreads 8)
[2025-06-06 04:23:44] Arguments: --nthreads 8
[2025-06-06 04:23:44] Threads: 8
[2025-06-06 04:23:44] Checking for CVMFS
[2025-06-06 04:23:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 04:23:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 04:23:45] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 04:23:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 04:23:45] 2.11.2.0 22385 35665 89640 146840 0 159 19141378 25165824 4181 130560 0 20612532 99.816 21213468 2386 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-06 04:23:45] CVMFS is ok
[2025-06-06 04:23:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 04:23:45] Checking for apptainer binary...
[2025-06-06 04:23:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 04:23:45] Running /usr/bin/apptainer --version
[2025-06-06 04:23:45] apptainer version 1.3.2-1.el7
[2025-06-06 04:23:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 04:23:46] cg-vwn497.simple-grid.lan
[2025-06-06 04:23:46] apptainer works
[2025-06-06 04:23:46] Set ATHENA_PROC_NUMBER=8
[2025-06-06 04:23:46] Set ATHENA_CORE_NUMBER=8
[2025-06-06 04:23:46] Starting ATLAS job with PandaID=6668862597
[2025-06-06 04:23:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 09:06:19]  *** The last 200 lines of the pilot log: ***
[2025-06-06 09:06:19] 2025-06-06 07:05:12,668 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6668862597/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 09:06:19] 2025-06-06 07:05:12,669 | INFO     | extracted standard info from prmon json
[2025-06-06 09:06:19] 2025-06-06 07:05:12,669 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 09:06:19] 2025-06-06 07:05:12,669 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 09:06:19] 2025-06-06 07:05:12,669 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 09:06:19] 2025-06-06 07:05:12,669 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 09:06:19] 2025-06-06 07:05:12,675 | INFO     | fitting pss+swap vs Time
[2025-06-06 09:06:19] 2025-06-06 07:05:12,675 | INFO     | sum of square deviations: 6378584712.5
[2025-06-06 09:06:19] 2025-06-06 07:05:12,678 | INFO     | sum of deviations: -40588311668.5
[2025-06-06 09:06:19] 2025-06-06 07:05:12,678 | INFO     | mean x: 1749185036.5
[2025-06-06 09:06:19] 2025-06-06 07:05:12,678 | INFO     | mean y: 2517949.602189781
[2025-06-06 09:06:19] 2025-06-06 07:05:12,678 | INFO     | -- intersect: 11132959987.662455
[2025-06-06 09:06:19] 2025-06-06 07:05:12,678 | INFO     | intersect: 11132959987.662455
[2025-06-06 09:06:19] 2025-06-06 07:05:12,679 | INFO     | chi2: 2.674723630363105
[2025-06-06 09:06:19] 2025-06-06 07:05:12,679 | INFO     | sum of square deviations: 6035722470.0
[2025-06-06 09:06:19] 2025-06-06 07:05:12,681 | INFO     | sum of deviations: -21620645409.999992
[2025-06-06 09:06:19] 2025-06-06 07:05:12,682 | INFO     | mean x: 1749184884.0
[2025-06-06 09:06:19] 2025-06-06 07:05:12,682 | INFO     | mean y: 2526266.237918216
[2025-06-06 09:06:19] 2025-06-06 07:05:12,682 | INFO     | -- intersect: 6268305768.4382515
[2025-06-06 09:06:19] 2025-06-06 07:05:12,682 | INFO     | intersect: 6268305768.4382515
[2025-06-06 09:06:19] 2025-06-06 07:05:12,682 | INFO     | chi2: 1.9057068353740418
[2025-06-06 09:06:19] 2025-06-06 07:05:12,682 | INFO     | current chi2=1.9057068353740418 (change=28.751261859703458 %)
[2025-06-06 09:06:19] 2025-06-06 07:05:12,683 | INFO     | sum of square deviations: 5705372090.0
[2025-06-06 09:06:19] 2025-06-06 07:05:12,685 | INFO     | sum of deviations: -21191533559.500004
[2025-06-06 09:06:19] 2025-06-06 07:05:12,686 | INFO     | mean x: 1749184731.5
[2025-06-06 09:06:19] 2025-06-06 07:05:12,686 | INFO     | mean y: 2526464.352272727
[2025-06-06 09:06:19] 2025-06-06 07:05:12,686 | INFO     | -- intersect: 6499544775.27321
[2025-06-06 09:06:19] 2025-06-06 07:05:12,686 | INFO     | intersect: 6499544775.27321
[2025-06-06 09:06:19] 2025-06-06 07:05:12,686 | INFO     | chi2: 1.9044346840924289
[2025-06-06 09:06:19] 2025-06-06 07:05:12,686 | INFO     | current chi2=1.9044346840924289 (change=0.06675482597842827 %)
[2025-06-06 09:06:19] 2025-06-06 07:05:12,687 | INFO     | right removable region: 263
[2025-06-06 09:06:19] 2025-06-06 07:05:12,687 | INFO     | sum of square deviations: 6035722470.0
[2025-06-06 09:06:19] 2025-06-06 07:05:12,689 | INFO     | sum of deviations: -87649762045.00002
[2025-06-06 09:06:19] 2025-06-06 07:05:12,689 | INFO     | mean x: 1749185189.0
[2025-06-06 09:06:19] 2025-06-06 07:05:12,690 | INFO     | mean y: 2538728.7732342007
[2025-06-06 09:06:19] 2025-06-06 07:05:12,690 | INFO     | -- intersect: 25403916335.270172
[2025-06-06 09:06:19] 2025-06-06 07:05:12,690 | INFO     | intersect: 25403916335.270172
[2025-06-06 09:06:19] 2025-06-06 07:05:12,690 | INFO     | chi2: 1.0445890583569404
[2025-06-06 09:06:19] 2025-06-06 07:05:12,690 | INFO     | current chi2=1.0445890583569404 (change=60.94590684065804 %)
[2025-06-06 09:06:19] 2025-06-06 07:05:12,691 | INFO     | sum of square deviations: 5705372090.0
[2025-06-06 09:06:19] 2025-06-06 07:05:12,693 | INFO     | sum of deviations: -83904611992.5
[2025-06-06 09:06:19] 2025-06-06 07:05:12,693 | INFO     | mean x: 1749185341.5
[2025-06-06 09:06:19] 2025-06-06 07:05:12,693 | INFO     | mean y: 2536980.875
[2025-06-06 09:06:19] 2025-06-06 07:05:12,694 | INFO     | -- intersect: 25726488910.10423
[2025-06-06 09:06:19] 2025-06-06 07:05:12,694 | INFO     | intersect: 25726488910.10423
[2025-06-06 09:06:19] 2025-06-06 07:05:12,694 | INFO     | chi2: 1.0358068350648348
[2025-06-06 09:06:19] 2025-06-06 07:05:12,694 | INFO     | current chi2=1.0358068350648348 (change=0.8407347580223857 %)
[2025-06-06 09:06:19] 2025-06-06 07:05:12,694 | INFO     | left removable region: 20
[2025-06-06 09:06:19] 2025-06-06 07:05:12,695 | INFO     | sum of square deviations: 4449281562.0
[2025-06-06 09:06:19] 2025-06-06 07:05:12,697 | INFO     | sum of deviations: -48812568379.0
[2025-06-06 09:06:19] 2025-06-06 07:05:12,697 | INFO     | mean x: 1749185311.0
[2025-06-06 09:06:19] 2025-06-06 07:05:12,697 | INFO     | mean y: 2538902.0
[2025-06-06 09:06:19] 2025-06-06 07:05:12,697 | INFO     | -- intersect: 19192654522.003525
[2025-06-06 09:06:19] 2025-06-06 07:05:12,697 | INFO     | intersect: 19192654522.003525
[2025-06-06 09:06:19] 2025-06-06 07:05:12,698 | INFO     | chi2: 0.22623669841702337
[2025-06-06 09:06:19] 2025-06-06 07:05:12,698 | INFO     | -- intersect: 19192654522.003525
[2025-06-06 09:06:19] 2025-06-06 07:05:12,698 | INFO     | current memory leak: -10.97 B/s (using 243 data points, chi2=0.23)
[2025-06-06 09:06:19] 2025-06-06 07:05:12,699 | INFO     | ..............................
[2025-06-06 09:06:19] 2025-06-06 07:05:12,699 | INFO     | . Timing measurements:
[2025-06-06 09:06:19] 2025-06-06 07:05:12,699 | INFO     | . get job = 0 s
[2025-06-06 09:06:19] 2025-06-06 07:05:12,699 | INFO     | . initial setup = 2 s
[2025-06-06 09:06:19] 2025-06-06 07:05:12,699 | INFO     | . payload setup = 14 s
[2025-06-06 09:06:19] 2025-06-06 07:05:12,699 | INFO     | . stage-in = 0 s
[2025-06-06 09:06:19] 2025-06-06 07:05:12,700 | INFO     | . payload execution = 16717 s
[2025-06-06 09:06:19] 2025-06-06 07:05:12,700 | INFO     | . stage-out = 4 s
[2025-06-06 09:06:19] 2025-06-06 07:05:12,700 | INFO     | . log creation = 1 s
[2025-06-06 09:06:19] 2025-06-06 07:05:12,700 | INFO     | ..............................
[2025-06-06 09:06:19] 2025-06-06 07:05:12,811 | INFO     | 
[2025-06-06 09:06:19] 2025-06-06 07:05:12,812 | INFO     | job summary report
[2025-06-06 09:06:19] 2025-06-06 07:05:12,812 | INFO     | --------------------------------------------------
[2025-06-06 09:06:19] 2025-06-06 07:05:12,812 | INFO     | PanDA job id: 6668862597
[2025-06-06 09:06:19] 2025-06-06 07:05:12,812 | INFO     | task id: 44871837
[2025-06-06 09:06:19] 2025-06-06 07:05:12,812 | INFO     | errors: (none)
[2025-06-06 09:06:19] 2025-06-06 07:05:12,812 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 09:06:19] 2025-06-06 07:05:12,812 | INFO     | pilot state: finished 
[2025-06-06 09:06:19] 2025-06-06 07:05:12,812 | INFO     | transexitcode: 0
[2025-06-06 09:06:19] 2025-06-06 07:05:12,812 | INFO     | exeerrorcode: 0
[2025-06-06 09:06:19] 2025-06-06 07:05:12,813 | INFO     | exeerrordiag: 
[2025-06-06 09:06:19] 2025-06-06 07:05:12,813 | INFO     | exitcode: 0
[2025-06-06 09:06:19] 2025-06-06 07:05:12,813 | INFO     | exitmsg: OK
[2025-06-06 09:06:19] 2025-06-06 07:05:12,813 | INFO     | cpuconsumptiontime: 61925 s
[2025-06-06 09:06:19] 2025-06-06 07:05:12,813 | INFO     | nevents: 400
[2025-06-06 09:06:19] 2025-06-06 07:05:12,813 | INFO     | neventsw: 0
[2025-06-06 09:06:19] 2025-06-06 07:05:12,813 | INFO     | pid: 12852
[2025-06-06 09:06:19] 2025-06-06 07:05:12,813 | INFO     | pgrp: 12852
[2025-06-06 09:06:19] 2025-06-06 07:05:12,813 | INFO     | corecount: 8
[2025-06-06 09:06:19] 2025-06-06 07:05:12,813 | INFO     | event service: False
[2025-06-06 09:06:19] 2025-06-06 07:05:12,813 | INFO     | sizes: {0: 2397222, 1: 2397421, 10: 2397627, 12: 2397655, 16736: 2428596, 16737: 2428595, 16741: 2437722, 16744: 2437806, 16841: 2437976}
[2025-06-06 09:06:19] 2025-06-06 07:05:12,813 | INFO     | --------------------------------------------------
[2025-06-06 09:06:19] 2025-06-06 07:05:12,813 | INFO     | 
[2025-06-06 09:06:19] 2025-06-06 07:05:12,813 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-06-06 09:06:19] 2025-06-06 07:05:13,212 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 09:06:19] 2025-06-06 07:05:13,212 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 09:06:19] 2025-06-06 07:05:13,212 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 09:06:19] 2025-06-06 07:05:13,212 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 09:06:19] 2025-06-06 07:05:13,212 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 09:06:19] 2025-06-06 07:05:13,212 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 09:06:19] 2025-06-06 07:05:13,212 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 09:06:19] 2025-06-06 07:05:13,212 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 09:06:19] 2025-06-06 07:05:13,213 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 09:06:19] 2025-06-06 07:05:13,213 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 09:06:19] 2025-06-06 07:05:13,213 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 09:06:19] 2025-06-06 07:05:13,213 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 09:06:19] 2025-06-06 07:05:13,213 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 09:06:19] 2025-06-06 07:05:13,213 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 09:06:19] 2025-06-06 07:05:13,213 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 09:06:19] 2025-06-06 07:05:13,213 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 09:06:19] 2025-06-06 07:05:13,213 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 09:06:19] 2025-06-06 07:05:13,213 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 09:06:19] 2025-06-06 07:05:13,213 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 09:06:19] 2025-06-06 07:05:13,213 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 09:06:19] 2025-06-06 07:05:13,214 | INFO     | job 6668862597 has completed (purged errors)
[2025-06-06 09:06:19] 2025-06-06 07:05:13,214 | INFO     | overall cleanup function is called
[2025-06-06 09:06:19] 2025-06-06 07:05:14,223 | INFO     | --- collectZombieJob: --- 10, [12852]
[2025-06-06 09:06:19] 2025-06-06 07:05:14,223 | INFO     | zombie collector waiting for pid 12852
[2025-06-06 09:06:19] 2025-06-06 07:05:14,224 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 09:06:19] 2025-06-06 07:05:14,224 | INFO     | collected zombie processes
[2025-06-06 09:06:19] 2025-06-06 07:05:14,224 | INFO     | will attempt to kill all subprocesses of pid=12852
[2025-06-06 09:06:19] 2025-06-06 07:05:14,374 | INFO     | process IDs to be killed: [12852] (in reverse order)
[2025-06-06 09:06:19] 2025-06-06 07:05:15,322 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 09:06:19] 2025-06-06 07:05:15,322 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 09:06:19] 2025-06-06 07:05:15,326 | INFO     | did not find any defunct processes belonging to 12852
[2025-06-06 09:06:19] 2025-06-06 07:05:15,328 | INFO     | did not find any defunct processes belonging to 12852
[2025-06-06 09:06:19] 2025-06-06 07:05:15,329 | INFO     | ready for new job
[2025-06-06 09:06:19] 2025-06-06 07:05:15,334 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 09:06:19] 2025-06-06 07:05:15,336 | INFO     | **************************************
[2025-06-06 09:06:19] 2025-06-06 07:05:15,337 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 09:06:19] 2025-06-06 07:05:15,337 | INFO     | **************************************
[2025-06-06 09:06:19] 2025-06-06 07:05:15,337 | INFO     | 
[2025-06-06 09:06:19] 2025-06-06 07:05:15,337 | INFO     | pilot is running in a VM
[2025-06-06 09:06:19] 2025-06-06 07:05:15,337 | INFO     | architecture information:
[2025-06-06 09:06:19] 2025-06-06 07:05:15,343 | INFO     | executing command: cat /etc/os-release
[2025-06-06 09:06:19] 2025-06-06 07:05:15,549 | INFO     | cat /etc/os-release:
[2025-06-06 09:06:19] NAME="CentOS Linux"
[2025-06-06 09:06:19] VERSION="7 (Core)"
[2025-06-06 09:06:19] ID="centos"
[2025-06-06 09:06:19] ID_LIKE="rhel fedora"
[2025-06-06 09:06:19] VERSION_ID="7"
[2025-06-06 09:06:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 09:06:19] ANSI_COLOR="0;31"
[2025-06-06 09:06:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 09:06:19] HOME_URL="https://www.centos.org/"
[2025-06-06 09:06:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 09:06:19] 
[2025-06-06 09:06:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 09:06:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 09:06:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 09:06:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 09:06:19] 
[2025-06-06 09:06:19] 2025-06-06 07:05:15,550 | INFO     | **************************************
[2025-06-06 09:06:19] 2025-06-06 07:05:16,053 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-06-06 09:06:19] 2025-06-06 07:05:16,300 | INFO     | sufficient remaining disk space (470877732864 B)
[2025-06-06 09:06:19] 2025-06-06 07:05:16,300 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 09:06:19] 2025-06-06 07:05:16,300 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 09:06:19] 2025-06-06 07:05:16,300 | INFO     | update_server=False
[2025-06-06 09:06:19] 2025-06-06 07:05:16,300 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 09:06:19] 2025-06-06 07:05:16,301 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 09:06:19] 2025-06-06 07:05:16,301 | INFO     | aborting loop
[2025-06-06 09:06:19] 2025-06-06 07:05:16,305 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 09:06:19] 2025-06-06 07:05:16,465 | INFO     | all payload control threads have been joined
[2025-06-06 09:06:19] 2025-06-06 07:05:16,524 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 09:06:19] 2025-06-06 07:05:17,121 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 09:06:19] 2025-06-06 07:05:17,121 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 09:06:19] 2025-06-06 07:05:17,121 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 09:06:19] 2025-06-06 07:05:17,306 | INFO     | [job] retrieve thread has finished
[2025-06-06 09:06:19] 2025-06-06 07:05:17,307 | INFO     | [job] job monitor thread has finished
[2025-06-06 09:06:19] 2025-06-06 07:05:17,317 | INFO     | all data control threads have been joined
[2025-06-06 09:06:19] 2025-06-06 07:05:17,359 | INFO     | [data] copytool_in thread has finished
[2025-06-06 09:06:19] 2025-06-06 07:05:17,370 | INFO     | all job control threads have been joined
[2025-06-06 09:06:19] 2025-06-06 07:05:17,386 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 09:06:19] 2025-06-06 07:05:17,471 | INFO     | [payload] control thread has finished
[2025-06-06 09:06:19] 2025-06-06 07:05:17,826 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 09:06:19] 2025-06-06 07:05:17,899 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 09:06:19] 2025-06-06 07:05:18,283 | INFO     | [payload] failed_post thread has finished
[2025-06-06 09:06:19] 2025-06-06 07:05:18,288 | INFO     | [job] validate thread has finished
[2025-06-06 09:06:19] 2025-06-06 07:05:18,316 | INFO     | [data] copytool_out thread has finished
[2025-06-06 09:06:19] 2025-06-06 07:05:18,323 | INFO     | [data] control thread has finished
[2025-06-06 09:06:19] 2025-06-06 07:05:18,376 | INFO     | [job] control thread has finished
[2025-06-06 09:06:19] 2025-06-06 07:05:18,574 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 09:06:19] 2025-06-06 07:05:18,752 | INFO     | [payload] validate_post thread has finished
[2025-06-06 09:06:19] 2025-06-06 07:05:18,760 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 09:06:19] 2025-06-06 07:05:18,832 | INFO     | [job] queue monitor thread has finished
[2025-06-06 09:06:19] 2025-06-06 07:05:20,535 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 09:06:19] 2025-06-06 07:05:20,725 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140482305144640)>', '<ExcThread(monitor, started 140481711294208)>']
[2025-06-06 09:06:19] 2025-06-06 07:05:21,144 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 09:06:19] 2025-06-06 07:05:21,144 | INFO     | [monitor] control thread has ended
[2025-06-06 09:06:19] 2025-06-06 07:05:25,751 | INFO     | all workflow threads have been joined
[2025-06-06 09:06:19] 2025-06-06 07:05:25,751 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 09:06:19] 2025-06-06 07:05:25,752 | INFO     | traces error code: 0
[2025-06-06 09:06:19] 2025-06-06 07:05:25,752 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 09:06:19] 2025-06-06 07:05:26,151 [wrapper] ==== pilot stdout END ====
[2025-06-06 09:06:19] 2025-06-06 07:05:26,245 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 09:06:19] 2025-06-06 07:05:26,336 [wrapper] pilotpid: 6314
[2025-06-06 09:06:19] 2025-06-06 07:05:26,412 [wrapper] Pilot exit status: 0
[2025-06-06 09:06:19] 2025-06-06 07:05:26,960 [wrapper] pandaids: 6668862597
[2025-06-06 09:06:19] 2025-06-06 07:05:27,844 [wrapper] cleanup supervisor_pilot  7281 6315
[2025-06-06 09:06:19] 2025-06-06 07:05:27,928 [wrapper] Test setup, not cleaning
[2025-06-06 09:06:19] 2025-06-06 07:05:27,994 [wrapper] apfmon messages muted
[2025-06-06 09:06:19] 2025-06-06 07:05:28,064 [wrapper] ==== wrapper stdout END ====
[2025-06-06 09:06:19] 2025-06-06 07:05:28,114 [wrapper] ==== wrapper stderr END ====
[2025-06-06 09:06:19]  *** Error codes and diagnostics ***
[2025-06-06 09:06:19]     "exeErrorCode": 0,
[2025-06-06 09:06:19]     "exeErrorDiag": "",
[2025-06-06 09:06:19]     "pilotErrorCode": 0,
[2025-06-06 09:06:19]     "pilotErrorDiag": "",
[2025-06-06 09:06:19]  *** Listing of results directory ***
[2025-06-06 09:06:19] total 417020
[2025-06-06 09:06:19] -rw-r--r--. 1 boinc boinc    495897 May 28 21:15 pilot3.tar.gz
[2025-06-06 09:06:19] -rwx------. 1 boinc boinc     37140 May 28 21:46 runpilot2-wrapper.sh
[2025-06-06 09:06:19] -rw-r--r--. 1 boinc boinc      5111 May 28 21:46 queuedata.json
[2025-06-06 09:06:19] -rw-r--r--. 1 boinc boinc       100 Jun  6 04:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 09:06:19] -rwxr-xr-x. 1 boinc boinc      7986 Jun  6 04:23 run_atlas
[2025-06-06 09:06:19] -rw-r--r--. 1 boinc boinc       105 Jun  6 04:23 job.xml
[2025-06-06 09:06:19] -rw-r--r--. 2 boinc boinc 225388644 Jun  6 04:23 EVNT.44871834._003483.pool.root.1
[2025-06-06 09:06:19] -rw-r--r--. 1 boinc boinc      6392 Jun  6 04:23 init_data.xml
[2025-06-06 09:06:19] -rw-r--r--. 2 boinc boinc     15093 Jun  6 04:23 start_atlas.sh
[2025-06-06 09:06:19] drwxrwx--x. 2 boinc boinc        68 Jun  6 04:23 shared
[2025-06-06 09:06:19] -rw-r--r--. 2 boinc boinc    508874 Jun  6 04:23 input.tar.gz
[2025-06-06 09:06:19] -rw-r--r--. 1 boinc boinc         0 Jun  6 04:23 boinc_lockfile
[2025-06-06 09:06:19] -rw-r--r--. 1 boinc boinc      2559 Jun  6 04:23 pandaJob.out
[2025-06-06 09:06:19] -rw-------. 1 boinc boinc    987721 Jun  6 04:24 agis_schedconf.cvmfs.json
[2025-06-06 09:06:19] drwx------. 4 boinc boinc      4096 Jun  6 04:24 pilot3
[2025-06-06 09:06:19] -rw-------. 1 boinc boinc 194062592 Jun  6 09:02 HITS.44871837._089529.pool.root.1
[2025-06-06 09:06:19] -rw-r--r--. 1 boinc boinc       531 Jun  6 09:02 boinc_task_state.xml
[2025-06-06 09:06:19] -rw-------. 1 boinc boinc      1022 Jun  6 09:03 memory_monitor_summary.json
[2025-06-06 09:06:19] -rw-------. 1 boinc boinc   1598969 Jun  6 09:03 agis_ddmendpoints.agis.ALL.json
[2025-06-06 09:06:19] -rw-------. 1 boinc boinc    414807 Jun  6 09:03 log.44871837._089529.job.log.tgz.1
[2025-06-06 09:06:19] -rw-------. 1 boinc boinc        95 Jun  6 09:04 pilot_heartbeat.json
[2025-06-06 09:06:19] -rw-------. 1 boinc boinc      7691 Jun  6 09:05 heartbeat.json
[2025-06-06 09:06:19] -rw-------. 1 boinc boinc      4417 Jun  6 09:05 pilotlog.txt
[2025-06-06 09:06:19] -rw-------. 1 boinc boinc   1458907 Jun  6 09:05 log.44871837._089529.job.log.1
[2025-06-06 09:06:19] -rw-------. 1 boinc boinc       357 Jun  6 09:05 output.list
[2025-06-06 09:06:19] -rw-r--r--. 1 boinc boinc       620 Jun  6 09:05 runtime_log
[2025-06-06 09:06:19] -rw-------. 1 boinc boinc   1894400 Jun  6 09:05 result.tar.gz
[2025-06-06 09:06:19] -rw-r--r--. 1 boinc boinc      8673 Jun  6 09:05 runtime_log.err
[2025-06-06 09:06:19] -rw-------. 1 boinc boinc       657 Jun  6 09:05 jCHKDmAube7n9Rq4apOajLDm4fhM0noT9bVof3QYDmV2TKDmu9E0bm.diag
[2025-06-06 09:06:19] -rw-r--r--. 1 boinc boinc      8192 Jun  6 09:06 boinc_mmap_file
[2025-06-06 09:06:19] -rw-r--r--. 1 boinc boinc        28 Jun  6 09:06 wrapper_checkpoint.txt
[2025-06-06 09:06:19] -rw-r--r--. 1 boinc boinc     20489 Jun  6 09:06 stderr.txt
[2025-06-06 09:06:19] HITS file was successfully produced:
[2025-06-06 09:06:19] -rw-------. 1 boinc boinc 194062592 Jun  6 09:02 shared/HITS.pool.root.1
[2025-06-06 09:06:19]  *** Contents of shared directory: ***
[2025-06-06 09:06:19] total 411992
[2025-06-06 09:06:19] -rw-r--r--. 2 boinc boinc 225388644 Jun  6 04:23 ATLAS.root_0
[2025-06-06 09:06:19] -rw-r--r--. 2 boinc boinc     15093 Jun  6 04:23 start_atlas.sh
[2025-06-06 09:06:19] -rw-r--r--. 2 boinc boinc    508874 Jun  6 04:23 input.tar.gz
[2025-06-06 09:06:19] -rw-------. 1 boinc boinc 194062592 Jun  6 09:02 HITS.pool.root.1
[2025-06-06 09:06:19] -rw-------. 1 boinc boinc   1894400 Jun  6 09:05 result.tar.gz
09:06:21 (2612): run_atlas exited; CPU time 62124.570721
09:06:21 (2612): called boinc_finish(0)

</stderr_txt>
]]>

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