Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:22:25 (13253): wrapper (7.7.26015): starting
13:22:25 (13253): wrapper: running run_atlas (--nthreads 10)
[2025-06-04 13:22:25] Arguments: --nthreads 10
[2025-06-04 13:22:25] Threads: 10
[2025-06-04 13:22:25] Checking for CVMFS
[2025-06-04 13:22:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 13:22:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 13:22:26] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 13:22:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 13:22:28] 2.11.2.0 13662 108986 238460 146789 1 91 17520834 18432001 19452 130560 0 504867796 99.098 1004356948 35538 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 13:22:28] CVMFS is ok
[2025-06-04 13:22:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 13:22:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 13:22:28] Further information can be found at the LHC@home message board.
[2025-06-04 13:22:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 13:22:28] Checking for apptainer binary...
[2025-06-04 13:22:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 13:22:28] Running /usr/bin/apptainer --version
[2025-06-04 13:22:28] apptainer version 1.3.2-1.el7
[2025-06-04 13:22:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 13:22:45] c-210-25.aglt2.org
[2025-06-04 13:22:45] apptainer works
[2025-06-04 13:22:45] Set ATHENA_PROC_NUMBER=10
[2025-06-04 13:22:45] Set ATHENA_CORE_NUMBER=10
[2025-06-04 13:22:45] Starting ATLAS job with PandaID=6679905006
[2025-06-04 13:22:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 19:09:55]  *** The last 200 lines of the pilot log: ***
[2025-06-04 19:09:55] 2025-06-04 23:09:38,894 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 19:09:55] 2025-06-04 23:09:38,894 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 19:09:55] 2025-06-04 23:09:38,894 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 19:09:55] 2025-06-04 23:09:38,894 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 19:09:55] 2025-06-04 23:09:38,898 | INFO     | fitting pss+swap vs Time
[2025-06-04 19:09:55] 2025-06-04 23:09:38,899 | INFO     | sum of square deviations: 11762494471.258934
[2025-06-04 19:09:55] 2025-06-04 23:09:38,901 | INFO     | sum of deviations: 145854916232.78574
[2025-06-04 19:09:55] 2025-06-04 23:09:38,901 | INFO     | mean x: 1749068335.7232144
[2025-06-04 19:09:55] 2025-06-04 23:09:38,901 | INFO     | mean y: 2544017.976190476
[2025-06-04 19:09:55] 2025-06-04 23:09:38,901 | INFO     | -- intersect: -21685901083.160854
[2025-06-04 19:09:55] 2025-06-04 23:09:38,901 | INFO     | intersect: -21685901083.160854
[2025-06-04 19:09:55] 2025-06-04 23:09:38,902 | INFO     | chi2: 6.355887596418753
[2025-06-04 19:09:55] 2025-06-04 23:09:38,902 | INFO     | sum of square deviations: 11245186716.006042
[2025-06-04 19:09:55] 2025-06-04 23:09:38,904 | INFO     | sum of deviations: 166547731625.3504
[2025-06-04 19:09:55] 2025-06-04 23:09:38,904 | INFO     | mean x: 1749068183.226586
[2025-06-04 19:09:55] 2025-06-04 23:09:38,904 | INFO     | mean y: 2550035.1419939576
[2025-06-04 19:09:55] 2025-06-04 23:09:38,904 | INFO     | -- intersect: -25902163308.552753
[2025-06-04 19:09:55] 2025-06-04 23:09:38,904 | INFO     | intersect: -25902163308.552753
[2025-06-04 19:09:55] 2025-06-04 23:09:38,905 | INFO     | chi2: 5.609563262342828
[2025-06-04 19:09:55] 2025-06-04 23:09:38,905 | INFO     | current chi2=5.609563262342828 (change=11.742251931837872 %)
[2025-06-04 19:09:55] 2025-06-04 23:09:38,905 | INFO     | right removable region: 330
[2025-06-04 19:09:55] 2025-06-04 23:09:38,905 | INFO     | sum of square deviations: 11245140966.006046
[2025-06-04 19:09:55] 2025-06-04 23:09:38,907 | INFO     | sum of deviations: 30067502261.45317
[2025-06-04 19:09:55] 2025-06-04 23:09:38,907 | INFO     | mean x: 1749068488.226586
[2025-06-04 19:09:55] 2025-06-04 23:09:38,907 | INFO     | mean y: 2578122.993957704
[2025-06-04 19:09:55] 2025-06-04 23:09:38,907 | INFO     | -- intersect: -4674119206.472057
[2025-06-04 19:09:55] 2025-06-04 23:09:38,907 | INFO     | intersect: -4674119206.472057
[2025-06-04 19:09:55] 2025-06-04 23:09:38,908 | INFO     | chi2: 2.10503125434694
[2025-06-04 19:09:55] 2025-06-04 23:09:38,908 | INFO     | current chi2=2.10503125434694 (change=66.88060916097656 %)
[2025-06-04 19:09:55] 2025-06-04 23:09:38,908 | INFO     | sum of square deviations: 10743183098.245338
[2025-06-04 19:09:55] 2025-06-04 23:09:38,910 | INFO     | sum of deviations: -26083045382.12269
[2025-06-04 19:09:55] 2025-06-04 23:09:38,910 | INFO     | mean x: 1749068640.7300613
[2025-06-04 19:09:55] 2025-06-04 23:09:38,910 | INFO     | mean y: 2595124.1349693253
[2025-06-04 19:09:55] 2025-06-04 23:09:38,910 | INFO     | -- intersect: 4249105335.8115273
[2025-06-04 19:09:55] 2025-06-04 23:09:38,910 | INFO     | intersect: 4249105335.8115273
[2025-06-04 19:09:55] 2025-06-04 23:09:38,911 | INFO     | chi2: 0.9930746056684142
[2025-06-04 19:09:55] 2025-06-04 23:09:38,911 | INFO     | current chi2=0.9930746056684142 (change=52.82375957042484 %)
[2025-06-04 19:09:55] 2025-06-04 23:09:38,911 | INFO     | sum of square deviations: 10256388305.476679
[2025-06-04 19:09:55] 2025-06-04 23:09:38,913 | INFO     | sum of deviations: -39418033478.37383
[2025-06-04 19:09:55] 2025-06-04 23:09:38,913 | INFO     | mean x: 1749068793.233645
[2025-06-04 19:09:55] 2025-06-04 23:09:38,913 | INFO     | mean y: 2599289.404984424
[2025-06-04 19:09:55] 2025-06-04 23:09:38,913 | INFO     | -- intersect: 6724736770.378452
[2025-06-04 19:09:55] 2025-06-04 23:09:38,913 | INFO     | intersect: 6724736770.378452
[2025-06-04 19:09:55] 2025-06-04 23:09:38,914 | INFO     | chi2: 0.9233636414034458
[2025-06-04 19:09:55] 2025-06-04 23:09:38,914 | INFO     | current chi2=0.9233636414034458 (change=7.019710691126536 %)
[2025-06-04 19:09:55] 2025-06-04 23:09:38,914 | INFO     | left removable region: 30
[2025-06-04 19:09:55] 2025-06-04 23:09:38,914 | INFO     | sum of square deviations: 8372274715.236703
[2025-06-04 19:09:55] 2025-06-04 23:09:38,916 | INFO     | sum of deviations: -1035818062.9033318
[2025-06-04 19:09:55] 2025-06-04 23:09:38,916 | INFO     | mean x: 1749069067.7433333
[2025-06-04 19:09:55] 2025-06-04 23:09:38,916 | INFO     | mean y: 2600771.9233333333
[2025-06-04 19:09:55] 2025-06-04 23:09:38,916 | INFO     | -- intersect: 218995646.1069159
[2025-06-04 19:09:55] 2025-06-04 23:09:38,916 | INFO     | intersect: 218995646.1069159
[2025-06-04 19:09:55] 2025-06-04 23:09:38,916 | INFO     | chi2: 0.05456660879584227
[2025-06-04 19:09:55] 2025-06-04 23:09:38,917 | INFO     | -- intersect: 218995646.1069159
[2025-06-04 19:09:55] 2025-06-04 23:09:38,917 | INFO     | current memory leak: -0.12 B/s (using 300 data points, chi2=0.05)
[2025-06-04 19:09:55] 2025-06-04 23:09:38,917 | INFO     | ..............................
[2025-06-04 19:09:55] 2025-06-04 23:09:38,917 | INFO     | . Timing measurements:
[2025-06-04 19:09:55] 2025-06-04 23:09:38,917 | INFO     | . get job = 0 s
[2025-06-04 19:09:55] 2025-06-04 23:09:38,918 | INFO     | . initial setup = 9 s
[2025-06-04 19:09:55] 2025-06-04 23:09:38,918 | INFO     | . payload setup = 95 s
[2025-06-04 19:09:55] 2025-06-04 23:09:38,918 | INFO     | . stage-in = 0 s
[2025-06-04 19:09:55] 2025-06-04 23:09:38,918 | INFO     | . payload execution = 20516 s
[2025-06-04 19:09:55] 2025-06-04 23:09:38,918 | INFO     | . stage-out = 2 s
[2025-06-04 19:09:55] 2025-06-04 23:09:38,918 | INFO     | . log creation = 0 s
[2025-06-04 19:09:55] 2025-06-04 23:09:38,918 | INFO     | ..............................
[2025-06-04 19:09:55] 2025-06-04 23:09:38,981 | INFO     | 
[2025-06-04 19:09:55] 2025-06-04 23:09:38,981 | INFO     | job summary report
[2025-06-04 19:09:55] 2025-06-04 23:09:38,981 | INFO     | --------------------------------------------------
[2025-06-04 19:09:55] 2025-06-04 23:09:38,981 | INFO     | PanDA job id: 6679905006
[2025-06-04 19:09:55] 2025-06-04 23:09:38,981 | INFO     | task id: 44871837
[2025-06-04 19:09:55] 2025-06-04 23:09:38,981 | INFO     | errors: (none)
[2025-06-04 19:09:55] 2025-06-04 23:09:38,981 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 19:09:55] 2025-06-04 23:09:38,981 | INFO     | pilot state: finished 
[2025-06-04 19:09:55] 2025-06-04 23:09:38,981 | INFO     | transexitcode: 0
[2025-06-04 19:09:55] 2025-06-04 23:09:38,981 | INFO     | exeerrorcode: 0
[2025-06-04 19:09:55] 2025-06-04 23:09:38,982 | INFO     | exeerrordiag: 
[2025-06-04 19:09:55] 2025-06-04 23:09:38,982 | INFO     | exitcode: 0
[2025-06-04 19:09:55] 2025-06-04 23:09:38,982 | INFO     | exitmsg: OK
[2025-06-04 19:09:55] 2025-06-04 23:09:38,982 | INFO     | cpuconsumptiontime: 71517 s
[2025-06-04 19:09:55] 2025-06-04 23:09:38,982 | INFO     | nevents: 400
[2025-06-04 19:09:55] 2025-06-04 23:09:38,982 | INFO     | neventsw: 0
[2025-06-04 19:09:55] 2025-06-04 23:09:38,982 | INFO     | pid: 15802
[2025-06-04 19:09:55] 2025-06-04 23:09:38,982 | INFO     | pgrp: 15802
[2025-06-04 19:09:55] 2025-06-04 23:09:38,982 | INFO     | corecount: 10
[2025-06-04 19:09:55] 2025-06-04 23:09:38,982 | INFO     | event service: False
[2025-06-04 19:09:55] 2025-06-04 23:09:38,982 | INFO     | sizes: {0: 2396513, 1: 2397198, 2: 2397397, 3: 2397397, 13: 2397425, 24: 2397481, 35: 2397637, 40: 2397871, 46: 2397899, 20616: 2431054, 20620: 2440331, 20630: 244
[2025-06-04 19:09:55] 2025-06-04 23:09:38,982 | INFO     | --------------------------------------------------
[2025-06-04 19:09:55] 2025-06-04 23:09:38,982 | INFO     | 
[2025-06-04 19:09:55] 2025-06-04 23:09:38,982 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 19:09:55] 2025-06-04 23:09:39,005 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 19:09:55] 2025-06-04 23:09:39,005 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 19:09:55] 2025-06-04 23:09:39,005 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 19:09:55] 2025-06-04 23:09:39,005 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 19:09:55] 2025-06-04 23:09:39,005 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 19:09:55] 2025-06-04 23:09:39,005 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 19:09:55] 2025-06-04 23:09:39,006 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 19:09:55] 2025-06-04 23:09:39,006 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 19:09:55] 2025-06-04 23:09:39,006 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 19:09:55] 2025-06-04 23:09:39,006 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 19:09:55] 2025-06-04 23:09:39,006 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 19:09:55] 2025-06-04 23:09:39,006 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 19:09:55] 2025-06-04 23:09:39,007 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 19:09:55] 2025-06-04 23:09:39,007 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 19:09:55] 2025-06-04 23:09:39,007 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 19:09:55] 2025-06-04 23:09:39,007 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 19:09:55] 2025-06-04 23:09:39,007 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 19:09:55] 2025-06-04 23:09:39,007 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 19:09:55] 2025-06-04 23:09:39,007 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 19:09:55] 2025-06-04 23:09:39,007 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 19:09:55] 2025-06-04 23:09:39,008 | INFO     | job 6679905006 has completed (purged errors)
[2025-06-04 19:09:55] 2025-06-04 23:09:39,008 | INFO     | overall cleanup function is called
[2025-06-04 19:09:55] 2025-06-04 23:09:40,015 | INFO     | --- collectZombieJob: --- 10, [15802]
[2025-06-04 19:09:55] 2025-06-04 23:09:40,015 | INFO     | zombie collector waiting for pid 15802
[2025-06-04 19:09:55] 2025-06-04 23:09:40,015 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 19:09:55] 2025-06-04 23:09:40,015 | INFO     | collected zombie processes
[2025-06-04 19:09:55] 2025-06-04 23:09:40,015 | INFO     | will attempt to kill all subprocesses of pid=15802
[2025-06-04 19:09:55] 2025-06-04 23:09:40,348 | INFO     | process IDs to be killed: [15802] (in reverse order)
[2025-06-04 19:09:55] 2025-06-04 23:09:40,471 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 19:09:55] 2025-06-04 23:09:40,471 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 19:09:55] 2025-06-04 23:09:40,479 | INFO     | did not find any defunct processes belonging to 15802
[2025-06-04 19:09:55] 2025-06-04 23:09:40,489 | INFO     | did not find any defunct processes belonging to 15802
[2025-06-04 19:09:55] 2025-06-04 23:09:40,489 | INFO     | ready for new job
[2025-06-04 19:09:55] 2025-06-04 23:09:40,490 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 19:09:55] 2025-06-04 23:09:40,492 | INFO     | **************************************
[2025-06-04 19:09:55] 2025-06-04 23:09:40,492 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 19:09:55] 2025-06-04 23:09:40,492 | INFO     | **************************************
[2025-06-04 19:09:55] 2025-06-04 23:09:40,492 | INFO     | 
[2025-06-04 19:09:55] 2025-06-04 23:09:40,495 | INFO     | architecture information:
[2025-06-04 19:09:55] 2025-06-04 23:09:40,495 | INFO     | executing command: cat /etc/os-release
[2025-06-04 19:09:55] 2025-06-04 23:09:40,524 | INFO     | cat /etc/os-release:
[2025-06-04 19:09:55] NAME="CentOS Linux"
[2025-06-04 19:09:55] VERSION="7 (Core)"
[2025-06-04 19:09:55] ID="centos"
[2025-06-04 19:09:55] ID_LIKE="rhel fedora"
[2025-06-04 19:09:55] VERSION_ID="7"
[2025-06-04 19:09:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 19:09:55] ANSI_COLOR="0;31"
[2025-06-04 19:09:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 19:09:55] HOME_URL="https://www.centos.org/"
[2025-06-04 19:09:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 19:09:55] 
[2025-06-04 19:09:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 19:09:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 19:09:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 19:09:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 19:09:55] 
[2025-06-04 19:09:55] 2025-06-04 23:09:40,524 | INFO     | **************************************
[2025-06-04 19:09:55] 2025-06-04 23:09:41,027 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 19:09:55] 2025-06-04 23:09:41,061 | INFO     | sufficient remaining disk space (57583599616 B)
[2025-06-04 19:09:55] 2025-06-04 23:09:41,062 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 19:09:55] 2025-06-04 23:09:41,062 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 19:09:55] 2025-06-04 23:09:41,062 | INFO     | update_server=False
[2025-06-04 19:09:55] 2025-06-04 23:09:41,062 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 19:09:55] 2025-06-04 23:09:41,062 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 19:09:55] 2025-06-04 23:09:41,063 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 19:09:55] 2025-06-04 23:09:41,063 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 19:09:55] 2025-06-04 23:09:41,063 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 19:09:55] 2025-06-04 23:09:41,191 | INFO     | all data control threads have been joined
[2025-06-04 19:09:55] 2025-06-04 23:09:41,284 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 19:09:55] 2025-06-04 23:09:41,285 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 19:09:55] 2025-06-04 23:09:41,285 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 19:09:55] 2025-06-04 23:09:41,285 | INFO     | will abort loop
[2025-06-04 19:09:55] 2025-06-04 23:09:41,899 | INFO     | all job control threads have been joined
[2025-06-04 19:09:55] 2025-06-04 23:09:42,029 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 19:09:55] 2025-06-04 23:09:42,067 | INFO     | [job] retrieve thread has finished
[2025-06-04 19:09:55] 2025-06-04 23:09:42,089 | INFO     | [payload] failed_post thread has finished
[2025-06-04 19:09:55] 2025-06-04 23:09:42,115 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 19:09:55] 2025-06-04 23:09:42,196 | INFO     | [data] control thread has finished
[2025-06-04 19:09:55] 2025-06-04 23:09:42,249 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 19:09:55] 2025-06-04 23:09:42,286 | INFO     | [job] job monitor thread has finished
[2025-06-04 19:09:55] 2025-06-04 23:09:42,403 | INFO     | all payload control threads have been joined
[2025-06-04 19:09:55] 2025-06-04 23:09:42,564 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 19:09:55] 2025-06-04 23:09:42,708 | INFO     | [payload] validate_post thread has finished
[2025-06-04 19:09:55] 2025-06-04 23:09:42,904 | INFO     | [job] control thread has finished
[2025-06-04 19:09:55] 2025-06-04 23:09:42,970 | INFO     | [job] validate thread has finished
[2025-06-04 19:09:55] 2025-06-04 23:09:42,971 | INFO     | [data] copytool_in thread has finished
[2025-06-04 19:09:55] 2025-06-04 23:09:43,025 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 19:09:55] 2025-06-04 23:09:43,408 | INFO     | [payload] control thread has finished
[2025-06-04 19:09:55] 2025-06-04 23:09:43,988 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 19:09:55] 2025-06-04 23:09:44,035 | INFO     | [data] copytool_out thread has finished
[2025-06-04 19:09:55] 2025-06-04 23:09:44,161 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 19:09:55] 2025-06-04 23:09:44,994 | INFO     | [job] queue monitor thread has finished
[2025-06-04 19:09:55] 2025-06-04 23:09:48,170 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 19:09:55] 2025-06-04 23:09:49,979 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140566563948352)>', '<ExcThread(monitor, started 140565605766912)>']
[2025-06-04 19:09:55] 2025-06-04 23:09:50,106 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 19:09:55] 2025-06-04 23:09:50,107 | INFO     | [monitor] control thread has ended
[2025-06-04 19:09:55] 2025-06-04 23:09:55,005 | INFO     | all workflow threads have been joined
[2025-06-04 19:09:55] 2025-06-04 23:09:55,005 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 19:09:55] 2025-06-04 23:09:55,006 | INFO     | traces error code: 0
[2025-06-04 19:09:55] 2025-06-04 23:09:55,006 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 19:09:55] 2025-06-04 23:09:55,183 [wrapper] ==== pilot stdout END ====
[2025-06-04 19:09:55] 2025-06-04 23:09:55,185 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 19:09:55] 2025-06-04 23:09:55,188 [wrapper] pilotpid: 28435
[2025-06-04 19:09:55] 2025-06-04 23:09:55,190 [wrapper] Pilot exit status: 0
[2025-06-04 19:09:55] 2025-06-04 23:09:55,201 [wrapper] pandaids: 6679905006
[2025-06-04 19:09:55] 2025-06-04 23:09:55,259 [wrapper] cleanup supervisor_pilot  9986 28436
[2025-06-04 19:09:55] 2025-06-04 23:09:55,262 [wrapper] Test setup, not cleaning
[2025-06-04 19:09:55] 2025-06-04 23:09:55,265 [wrapper] apfmon messages muted
[2025-06-04 19:09:55] 2025-06-04 23:09:55,268 [wrapper] ==== wrapper stdout END ====
[2025-06-04 19:09:55] 2025-06-04 23:09:55,271 [wrapper] ==== wrapper stderr END ====
[2025-06-04 19:09:55]  *** Error codes and diagnostics ***
[2025-06-04 19:09:55]     "exeErrorCode": 0,
[2025-06-04 19:09:55]     "exeErrorDiag": "",
[2025-06-04 19:09:55]     "pilotErrorCode": 0,
[2025-06-04 19:09:55]     "pilotErrorDiag": "",
[2025-06-04 19:09:55]  *** Listing of results directory ***
[2025-06-04 19:09:55] total 426900
[2025-06-04 19:09:55] -rw-r--r-- 1 boincer umatlas    495897 Jun  4 12:57 pilot3.tar.gz
[2025-06-04 19:09:55] -rw-r--r-- 1 boincer umatlas      5111 Jun  4 13:21 queuedata.json
[2025-06-04 19:09:55] -rwx------ 1 boincer umatlas     37140 Jun  4 13:21 runpilot2-wrapper.sh
[2025-06-04 19:09:55] -rw-r--r-- 1 boincer umatlas       100 Jun  4 13:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 19:09:55] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 13:22 run_atlas
[2025-06-04 19:09:55] -rw-r--r-- 1 boincer umatlas       105 Jun  4 13:22 job.xml
[2025-06-04 19:09:55] -rw-r--r-- 2 boincer umatlas 223277779 Jun  4 13:22 EVNT.44871834._002888.pool.root.1
[2025-06-04 19:09:55] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 13:22 start_atlas.sh
[2025-06-04 19:09:55] drwxrwx--x 2 boincer umatlas      4096 Jun  4 13:22 shared
[2025-06-04 19:09:55] -rw-r--r-- 2 boincer umatlas    508882 Jun  4 13:22 input.tar.gz
[2025-06-04 19:09:55] -rw-r--r-- 1 boincer umatlas         0 Jun  4 13:22 boinc_lockfile
[2025-06-04 19:09:55] -rw-r--r-- 1 boincer umatlas      2558 Jun  4 13:22 pandaJob.out
[2025-06-04 19:09:55] -rw------- 1 boincer umatlas    990984 Jun  4 13:24 agis_schedconf.cvmfs.json
[2025-06-04 19:09:55] drwx------ 4 boincer umatlas      4096 Jun  4 13:24 pilot3
[2025-06-04 19:09:55] -rw-r--r-- 1 boincer umatlas      6229 Jun  4 19:03 init_data.xml
[2025-06-04 19:09:55] -rw------- 1 boincer umatlas 205671510 Jun  4 19:08 HITS.44871837._102236.pool.root.1
[2025-06-04 19:09:55] -rw-r--r-- 1 boincer umatlas       531 Jun  4 19:08 boinc_task_state.xml
[2025-06-04 19:09:55] -rw------- 1 boincer umatlas        95 Jun  4 19:08 pilot_heartbeat.json
[2025-06-04 19:09:55] -rw------- 1 boincer umatlas      1064 Jun  4 19:09 memory_monitor_summary.json
[2025-06-04 19:09:55] -rw------- 1 boincer umatlas   1598969 Jun  4 19:09 agis_ddmendpoints.agis.ALL.json
[2025-06-04 19:09:55] -rw------- 1 boincer umatlas    473317 Jun  4 19:09 log.44871837._102236.job.log.tgz.1
[2025-06-04 19:09:55] -rw------- 1 boincer umatlas      7756 Jun  4 19:09 heartbeat.json
[2025-06-04 19:09:55] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 19:09 boinc_mmap_file
[2025-06-04 19:09:55] -rw-r--r-- 1 boincer umatlas        28 Jun  4 19:09 wrapper_checkpoint.txt
[2025-06-04 19:09:55] -rw------- 1 boincer umatlas      4662 Jun  4 19:09 pilotlog.txt
[2025-06-04 19:09:55] -rw------- 1 boincer umatlas   1705386 Jun  4 19:09 log.44871837._102236.job.log.1
[2025-06-04 19:09:55] -rw------- 1 boincer umatlas       357 Jun  4 19:09 output.list
[2025-06-04 19:09:55] -rw-r--r-- 1 boincer umatlas       620 Jun  4 19:09 runtime_log
[2025-06-04 19:09:55] -rw------- 1 boincer umatlas   2201600 Jun  4 19:09 result.tar.gz
[2025-06-04 19:09:55] -rw-r--r-- 1 boincer umatlas      8662 Jun  4 19:09 runtime_log.err
[2025-06-04 19:09:55] -rw------- 1 boincer umatlas       662 Jun  4 19:09 FqVMDmXz6g7n9Rq4apOajLDm4fhM0noT9bVof3QYDmx3aKDmspDa6n.diag
[2025-06-04 19:09:55] -rw-r--r-- 1 boincer umatlas     20939 Jun  4 19:09 stderr.txt
[2025-06-04 19:09:55] HITS file was successfully produced:
[2025-06-04 19:09:55] -rw------- 1 boincer umatlas 205671510 Jun  4 19:08 shared/HITS.pool.root.1
[2025-06-04 19:09:55]  *** Contents of shared directory: ***
[2025-06-04 19:09:55] total 421572
[2025-06-04 19:09:55] -rw-r--r-- 2 boincer umatlas 223277779 Jun  4 13:22 ATLAS.root_0
[2025-06-04 19:09:55] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 13:22 start_atlas.sh
[2025-06-04 19:09:55] -rw-r--r-- 2 boincer umatlas    508882 Jun  4 13:22 input.tar.gz
[2025-06-04 19:09:55] -rw------- 1 boincer umatlas 205671510 Jun  4 19:08 HITS.pool.root.1
[2025-06-04 19:09:55] -rw------- 1 boincer umatlas   2201600 Jun  4 19:09 result.tar.gz
19:09:57 (13253): run_atlas exited; CPU time 72168.584116
19:09:57 (13253): called boinc_finish(0)

</stderr_txt>
]]>

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