Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:25:02 (23648): wrapper (7.7.26015): starting
11:25:02 (23648): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 11:25:02] Arguments: --nthreads 8
[2025-06-04 11:25:02] Threads: 8
[2025-06-04 11:25:02] Checking for CVMFS
[2025-06-04 11:25:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 11:25:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 11:25:03] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 11:25:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 11:25:04] 2.11.2.0 14683 33013 90740 146775 3 16 18008349 25165825 4126 130560 0 17217288 99.785 19710984 2124 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 11:25:04] CVMFS is ok
[2025-06-04 11:25:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 11:25:04] Checking for apptainer binary...
[2025-06-04 11:25:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 11:25:04] Running /usr/bin/apptainer --version
[2025-06-04 11:25:04] apptainer version 1.3.2-1.el7
[2025-06-04 11:25:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 11:25:17] cg-vwn437.simple-grid.lan
[2025-06-04 11:25:17] apptainer works
[2025-06-04 11:25:17] Set ATHENA_PROC_NUMBER=8
[2025-06-04 11:25:17] Set ATHENA_CORE_NUMBER=8
[2025-06-04 11:25:17] Starting ATLAS job with PandaID=6678015312
[2025-06-04 11:25:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 18:19:54]  *** The last 200 lines of the pilot log: ***
[2025-06-04 18:19:54] 2025-06-04 13:22:28,009 | INFO     | extracted standard info from prmon json
[2025-06-04 18:19:54] 2025-06-04 13:22:28,009 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 18:19:54] 2025-06-04 13:22:28,009 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 18:19:54] 2025-06-04 13:22:28,010 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 18:19:54] 2025-06-04 13:22:28,010 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 18:19:54] 2025-06-04 13:22:28,015 | INFO     | fitting pss+swap vs Time
[2025-06-04 18:19:54] 2025-06-04 13:22:28,016 | INFO     | sum of square deviations: 3438620752.0
[2025-06-04 18:19:54] 2025-06-04 13:22:28,017 | INFO     | sum of deviations: -35798794524.000015
[2025-06-04 18:19:54] 2025-06-04 13:22:28,018 | INFO     | mean x: 1749036447.0
[2025-06-04 18:19:54] 2025-06-04 13:22:28,018 | INFO     | mean y: 2520581.385650224
[2025-06-04 18:19:54] 2025-06-04 13:22:28,018 | INFO     | -- intersect: 18211390037.176117
[2025-06-04 18:19:54] 2025-06-04 13:22:28,018 | INFO     | intersect: 18211390037.176117
[2025-06-04 18:19:54] 2025-06-04 13:22:28,019 | INFO     | chi2: 2.591239238428269
[2025-06-04 18:19:54] 2025-06-04 13:22:28,019 | INFO     | sum of square deviations: 3212467674.5
[2025-06-04 18:19:54] 2025-06-04 13:22:28,027 | INFO     | sum of deviations: -19942965154.99999
[2025-06-04 18:19:54] 2025-06-04 13:22:28,037 | INFO     | mean x: 1749036294.5
[2025-06-04 18:19:54] 2025-06-04 13:22:28,037 | INFO     | mean y: 2531093.339449541
[2025-06-04 18:19:54] 2025-06-04 13:22:28,037 | INFO     | -- intersect: 10860529806.578733
[2025-06-04 18:19:54] 2025-06-04 13:22:28,037 | INFO     | intersect: 10860529806.578733
[2025-06-04 18:19:54] 2025-06-04 13:22:28,037 | INFO     | chi2: 1.828642792482168
[2025-06-04 18:19:54] 2025-06-04 13:22:28,038 | INFO     | current chi2=1.828642792482168 (change=29.429796934097762 %)
[2025-06-04 18:19:54] 2025-06-04 13:22:28,038 | INFO     | sum of square deviations: 2996454322.0
[2025-06-04 18:19:54] 2025-06-04 13:22:28,040 | INFO     | sum of deviations: -19047874578.999996
[2025-06-04 18:19:54] 2025-06-04 13:22:28,040 | INFO     | mean x: 1749036142.0
[2025-06-04 18:19:54] 2025-06-04 13:22:28,040 | INFO     | mean y: 2531725.323943662
[2025-06-04 18:19:54] 2025-06-04 13:22:28,040 | INFO     | -- intersect: 11120812695.720139
[2025-06-04 18:19:54] 2025-06-04 13:22:28,040 | INFO     | intersect: 11120812695.720139
[2025-06-04 18:19:54] 2025-06-04 13:22:28,041 | INFO     | chi2: 1.8276364183322218
[2025-06-04 18:19:54] 2025-06-04 13:22:28,041 | INFO     | current chi2=1.8276364183322218 (change=0.055033938508032176 %)
[2025-06-04 18:19:54] 2025-06-04 13:22:28,041 | INFO     | right removable region: 212
[2025-06-04 18:19:54] 2025-06-04 13:22:28,042 | INFO     | sum of square deviations: 3212467674.5
[2025-06-04 18:19:54] 2025-06-04 13:22:28,043 | INFO     | sum of deviations: -72737043611.0
[2025-06-04 18:19:54] 2025-06-04 13:22:28,043 | INFO     | mean x: 1749036599.5
[2025-06-04 18:19:54] 2025-06-04 13:22:28,043 | INFO     | mean y: 2545263.1559633026
[2025-06-04 18:19:54] 2025-06-04 13:22:28,044 | INFO     | -- intersect: 39604422793.29098
[2025-06-04 18:19:54] 2025-06-04 13:22:28,044 | INFO     | intersect: 39604422793.29098
[2025-06-04 18:19:54] 2025-06-04 13:22:28,044 | INFO     | chi2: 0.9999783154924706
[2025-06-04 18:19:54] 2025-06-04 13:22:28,044 | INFO     | current chi2=0.9999783154924706 (change=61.40926315630304 %)
[2025-06-04 18:19:54] 2025-06-04 13:22:28,045 | INFO     | sum of square deviations: 2996454322.0
[2025-06-04 18:19:54] 2025-06-04 13:22:28,046 | INFO     | sum of deviations: -71851042340.0
[2025-06-04 18:19:54] 2025-06-04 13:22:28,047 | INFO     | mean x: 1749036752.0
[2025-06-04 18:19:54] 2025-06-04 13:22:28,047 | INFO     | mean y: 2544601.3755868543
[2025-06-04 18:19:54] 2025-06-04 13:22:28,047 | INFO     | -- intersect: 41942150621.563095
[2025-06-04 18:19:54] 2025-06-04 13:22:28,047 | INFO     | intersect: 41942150621.563095
[2025-06-04 18:19:54] 2025-06-04 13:22:28,047 | INFO     | chi2: 0.9810937819567308
[2025-06-04 18:19:54] 2025-06-04 13:22:28,047 | INFO     | current chi2=0.9810937819567308 (change=1.8884943046429503 %)
[2025-06-04 18:19:54] 2025-06-04 13:22:28,048 | INFO     | left removable region: 20
[2025-06-04 18:19:54] 2025-06-04 13:22:28,048 | INFO     | sum of square deviations: 2194675568.0
[2025-06-04 18:19:54] 2025-06-04 13:22:28,066 | INFO     | sum of deviations: -42809056745.500015
[2025-06-04 18:19:54] 2025-06-04 13:22:28,066 | INFO     | mean x: 1749036721.5
[2025-06-04 18:19:54] 2025-06-04 13:22:28,066 | INFO     | mean y: 2548320.1197916665
[2025-06-04 18:19:54] 2025-06-04 13:22:28,066 | INFO     | -- intersect: 34119031572.76281
[2025-06-04 18:19:54] 2025-06-04 13:22:28,066 | INFO     | intersect: 34119031572.76281
[2025-06-04 18:19:54] 2025-06-04 13:22:28,067 | INFO     | chi2: 0.1810215244184841
[2025-06-04 18:19:54] 2025-06-04 13:22:28,067 | INFO     | -- intersect: 34119031572.76281
[2025-06-04 18:19:54] 2025-06-04 13:22:28,067 | INFO     | current memory leak: -19.51 B/s (using 192 data points, chi2=0.18)
[2025-06-04 18:19:54] 2025-06-04 13:22:28,068 | INFO     | ..............................
[2025-06-04 18:19:54] 2025-06-04 13:22:28,068 | INFO     | . Timing measurements:
[2025-06-04 18:19:54] 2025-06-04 13:22:28,068 | INFO     | . get job = 0 s
[2025-06-04 18:19:54] 2025-06-04 13:22:28,068 | INFO     | . initial setup = 6 s
[2025-06-04 18:19:54] 2025-06-04 13:22:28,068 | INFO     | . payload setup = 153 s
[2025-06-04 18:19:54] 2025-06-04 13:22:28,068 | INFO     | . stage-in = 0 s
[2025-06-04 18:19:54] 2025-06-04 13:22:28,068 | INFO     | . payload execution = 13607 s
[2025-06-04 18:19:54] 2025-06-04 13:22:28,069 | INFO     | . stage-out = 3 s
[2025-06-04 18:19:54] 2025-06-04 13:22:28,069 | INFO     | . log creation = 1 s
[2025-06-04 18:19:54] 2025-06-04 13:22:28,069 | INFO     | ..............................
[2025-06-04 18:19:54] 2025-06-04 13:22:28,195 | INFO     | 
[2025-06-04 18:19:54] 2025-06-04 13:22:28,196 | INFO     | job summary report
[2025-06-04 18:19:54] 2025-06-04 13:22:28,196 | INFO     | --------------------------------------------------
[2025-06-04 18:19:54] 2025-06-04 13:22:28,196 | INFO     | PanDA job id: 6678015312
[2025-06-04 18:19:54] 2025-06-04 13:22:28,196 | INFO     | task id: 45006595
[2025-06-04 18:19:54] 2025-06-04 13:22:28,196 | INFO     | errors: (none)
[2025-06-04 18:19:54] 2025-06-04 13:22:28,196 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 18:19:54] 2025-06-04 13:22:28,196 | INFO     | pilot state: finished 
[2025-06-04 18:19:54] 2025-06-04 13:22:28,196 | INFO     | transexitcode: 0
[2025-06-04 18:19:54] 2025-06-04 13:22:28,197 | INFO     | exeerrorcode: 0
[2025-06-04 18:19:54] 2025-06-04 13:22:28,197 | INFO     | exeerrordiag: 
[2025-06-04 18:19:54] 2025-06-04 13:22:28,197 | INFO     | exitcode: 0
[2025-06-04 18:19:54] 2025-06-04 13:22:28,197 | INFO     | exitmsg: OK
[2025-06-04 18:19:54] 2025-06-04 13:22:28,197 | INFO     | cpuconsumptiontime: 51160 s
[2025-06-04 18:19:54] 2025-06-04 13:22:28,197 | INFO     | nevents: 400
[2025-06-04 18:19:54] 2025-06-04 13:22:28,197 | INFO     | neventsw: 0
[2025-06-04 18:19:54] 2025-06-04 13:22:28,197 | INFO     | pid: 5260
[2025-06-04 18:19:54] 2025-06-04 13:22:28,208 | INFO     | pgrp: 5260
[2025-06-04 18:19:54] 2025-06-04 13:22:28,209 | INFO     | corecount: 8
[2025-06-04 18:19:54] 2025-06-04 13:22:28,209 | INFO     | event service: False
[2025-06-04 18:19:54] 2025-06-04 13:22:28,209 | INFO     | sizes: {0: 2405013, 1: 2405212, 12: 2405212, 23: 2405240, 33: 2405268, 44: 2405324, 55: 2405480, 66: 2405508, 76: 2405536, 82: 2405798, 87: 2405854, 13765: 2435796
[2025-06-04 18:19:54] 2025-06-04 13:22:28,209 | INFO     | --------------------------------------------------
[2025-06-04 18:19:54] 2025-06-04 13:22:28,209 | INFO     | 
[2025-06-04 18:19:54] 2025-06-04 13:22:28,209 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-06-04 18:19:54] 2025-06-04 13:22:28,404 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 18:19:54] 2025-06-04 13:22:28,404 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 18:19:54] 2025-06-04 13:22:28,404 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 18:19:54] 2025-06-04 13:22:28,405 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 18:19:54] 2025-06-04 13:22:28,405 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 18:19:54] 2025-06-04 13:22:28,405 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 18:19:54] 2025-06-04 13:22:28,405 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 18:19:54] 2025-06-04 13:22:28,405 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 18:19:54] 2025-06-04 13:22:28,405 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 18:19:54] 2025-06-04 13:22:28,405 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 18:19:54] 2025-06-04 13:22:28,405 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 18:19:54] 2025-06-04 13:22:28,406 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 18:19:54] 2025-06-04 13:22:28,406 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 18:19:54] 2025-06-04 13:22:28,406 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 18:19:54] 2025-06-04 13:22:28,406 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 18:19:54] 2025-06-04 13:22:28,406 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 18:19:54] 2025-06-04 13:22:28,406 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 18:19:54] 2025-06-04 13:22:28,406 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 18:19:54] 2025-06-04 13:22:28,406 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 18:19:54] 2025-06-04 13:22:28,406 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 18:19:54] 2025-06-04 13:22:28,407 | INFO     | job 6678015312 has completed (purged errors)
[2025-06-04 18:19:54] 2025-06-04 13:22:28,407 | INFO     | overall cleanup function is called
[2025-06-04 18:19:54] 2025-06-04 13:22:29,416 | INFO     | --- collectZombieJob: --- 10, [5260]
[2025-06-04 18:19:54] 2025-06-04 13:22:29,417 | INFO     | zombie collector waiting for pid 5260
[2025-06-04 18:19:54] 2025-06-04 13:22:29,417 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 18:19:54] 2025-06-04 13:22:29,417 | INFO     | collected zombie processes
[2025-06-04 18:19:54] 2025-06-04 13:22:29,417 | INFO     | will attempt to kill all subprocesses of pid=5260
[2025-06-04 18:19:54] 2025-06-04 13:22:29,567 | INFO     | process IDs to be killed: [5260] (in reverse order)
[2025-06-04 18:19:54] 2025-06-04 13:22:30,445 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 18:19:54] 2025-06-04 13:22:30,446 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 18:19:54] 2025-06-04 13:22:30,449 | INFO     | did not find any defunct processes belonging to 5260
[2025-06-04 18:19:54] 2025-06-04 13:22:30,462 | INFO     | did not find any defunct processes belonging to 5260
[2025-06-04 18:19:54] 2025-06-04 13:22:30,462 | INFO     | ready for new job
[2025-06-04 18:19:54] 2025-06-04 13:22:30,462 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 18:19:54] 2025-06-04 13:22:30,464 | INFO     | **************************************
[2025-06-04 18:19:54] 2025-06-04 13:22:30,464 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 18:19:54] 2025-06-04 13:22:30,464 | INFO     | **************************************
[2025-06-04 18:19:54] 2025-06-04 13:22:30,465 | INFO     | 
[2025-06-04 18:19:54] 2025-06-04 13:22:30,465 | INFO     | pilot is running in a VM
[2025-06-04 18:19:54] 2025-06-04 13:22:30,465 | INFO     | architecture information:
[2025-06-04 18:19:54] 2025-06-04 13:22:30,473 | INFO     | executing command: cat /etc/os-release
[2025-06-04 18:19:54] 2025-06-04 13:22:30,577 | INFO     | cat /etc/os-release:
[2025-06-04 18:19:54] NAME="CentOS Linux"
[2025-06-04 18:19:54] VERSION="7 (Core)"
[2025-06-04 18:19:54] ID="centos"
[2025-06-04 18:19:54] ID_LIKE="rhel fedora"
[2025-06-04 18:19:54] VERSION_ID="7"
[2025-06-04 18:19:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 18:19:54] ANSI_COLOR="0;31"
[2025-06-04 18:19:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 18:19:54] HOME_URL="https://www.centos.org/"
[2025-06-04 18:19:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 18:19:54] 
[2025-06-04 18:19:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 18:19:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 18:19:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 18:19:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 18:19:54] 
[2025-06-04 18:19:54] 2025-06-04 13:22:30,577 | INFO     | **************************************
[2025-06-04 18:19:54] 2025-06-04 13:22:31,081 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-06-04 18:19:54] 2025-06-04 13:22:31,266 | INFO     | sufficient remaining disk space (496548970496 B)
[2025-06-04 18:19:54] 2025-06-04 13:22:31,266 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 18:19:54] 2025-06-04 13:22:31,267 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 18:19:54] 2025-06-04 13:22:31,267 | INFO     | update_server=False
[2025-06-04 18:19:54] 2025-06-04 13:22:31,267 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 18:19:54] 2025-06-04 13:22:31,267 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 18:19:54] 2025-06-04 13:22:31,267 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 18:19:54] 2025-06-04 13:22:31,268 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 18:19:54] 2025-06-04 13:22:31,269 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 18:19:54] 2025-06-04 13:22:31,269 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 18:19:54] 2025-06-04 13:22:31,269 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 18:19:54] 2025-06-04 13:22:31,445 | INFO     | all job control threads have been joined
[2025-06-04 18:19:54] 2025-06-04 13:22:31,697 | INFO     | all payload control threads have been joined
[2025-06-04 18:19:54] 2025-06-04 13:22:31,731 | INFO     | all data control threads have been joined
[2025-06-04 18:19:54] 2025-06-04 13:22:31,961 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 18:19:54] 2025-06-04 13:22:31,962 | INFO     | aborting loop
[2025-06-04 18:19:54] 2025-06-04 13:22:32,272 | INFO     | [job] retrieve thread has finished
[2025-06-04 18:19:54] 2025-06-04 13:22:32,343 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 18:19:54] 2025-06-04 13:22:32,373 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 18:19:54] 2025-06-04 13:22:32,452 | INFO     | [job] control thread has finished
[2025-06-04 18:19:54] 2025-06-04 13:22:32,503 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 18:19:54] 2025-06-04 13:22:32,703 | INFO     | [payload] control thread has finished
[2025-06-04 18:19:54] 2025-06-04 13:22:32,737 | INFO     | [payload] failed_post thread has finished
[2025-06-04 18:19:54] 2025-06-04 13:22:32,737 | INFO     | [data] control thread has finished
[2025-06-04 18:19:54] 2025-06-04 13:22:32,765 | INFO     | [payload] validate_post thread has finished
[2025-06-04 18:19:54] 2025-06-04 13:22:32,899 | INFO     | [job] validate thread has finished
[2025-06-04 18:19:54] 2025-06-04 13:22:32,968 | INFO     | [job] job monitor thread has finished
[2025-06-04 18:19:54] 2025-06-04 13:22:33,213 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 18:19:54] 2025-06-04 13:22:33,214 | INFO     | [data] copytool_in thread has finished
[2025-06-04 18:19:54] 2025-06-04 13:22:33,277 | INFO     | [data] copytool_out thread has finished
[2025-06-04 18:19:54] 2025-06-04 13:22:33,710 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 18:19:54] 2025-06-04 13:22:34,219 | INFO     | [job] queue monitor thread has finished
[2025-06-04 18:19:54] 2025-06-04 13:22:35,277 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 18:19:54] 2025-06-04 13:22:35,778 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140077805078336)>', '<ExcThread(monitor, started 140077506213632)>']
[2025-06-04 18:19:54] 2025-06-04 13:22:36,297 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 18:19:54] 2025-06-04 13:22:36,298 | INFO     | [monitor] control thread has ended
[2025-06-04 18:19:54] 2025-06-04 13:22:40,803 | INFO     | all workflow threads have been joined
[2025-06-04 18:19:54] 2025-06-04 13:22:40,804 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 18:19:54] 2025-06-04 13:22:40,804 | INFO     | traces error code: 0
[2025-06-04 18:19:54] 2025-06-04 13:22:40,804 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 18:19:54] 2025-06-04 13:22:41,095 [wrapper] ==== pilot stdout END ====
[2025-06-04 18:19:54] 2025-06-04 13:22:41,157 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 18:19:54] 2025-06-04 13:22:41,209 [wrapper] pilotpid: 29047
[2025-06-04 18:19:54] 2025-06-04 13:22:41,255 [wrapper] Pilot exit status: 0
[2025-06-04 18:19:54] 2025-06-04 13:22:41,587 [wrapper] pandaids: 6678015312
[2025-06-04 18:19:54] 2025-06-04 13:22:42,397 [wrapper] cleanup supervisor_pilot 16420 29048
[2025-06-04 18:19:54] 2025-06-04 13:22:42,479 [wrapper] Test setup, not cleaning
[2025-06-04 18:19:54] 2025-06-04 13:22:42,603 [wrapper] apfmon messages muted
[2025-06-04 18:19:54] 2025-06-04 13:22:42,705 [wrapper] ==== wrapper stdout END ====
[2025-06-04 18:19:54] 2025-06-04 13:22:42,794 [wrapper] ==== wrapper stderr END ====
[2025-06-04 18:19:54]  *** Error codes and diagnostics ***
[2025-06-04 18:19:54]     "exeErrorCode": 0,
[2025-06-04 18:19:54]     "exeErrorDiag": "",
[2025-06-04 18:19:54]     "pilotErrorCode": 0,
[2025-06-04 18:19:54]     "pilotErrorDiag": "",
[2025-06-04 18:19:54]  *** Listing of results directory ***
[2025-06-04 18:19:54] total 396900
[2025-06-04 18:19:54] -rw-r--r--. 1 boinc boinc    495897 Jun  3 21:41 pilot3.tar.gz
[2025-06-04 18:19:54] -rw-r--r--. 1 boinc boinc      5111 Jun  3 22:02 queuedata.json
[2025-06-04 18:19:54] -rwx------. 1 boinc boinc     37140 Jun  3 22:03 runpilot2-wrapper.sh
[2025-06-04 18:19:54] -rw-r--r--. 1 boinc boinc       100 Jun  4 11:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 18:19:54] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 11:25 run_atlas
[2025-06-04 18:19:54] -rw-r--r--. 1 boinc boinc       105 Jun  4 11:25 job.xml
[2025-06-04 18:19:54] -rw-r--r--. 2 boinc boinc 216163858 Jun  4 11:25 EVNT.45006593._001780.pool.root.1
[2025-06-04 18:19:54] -rw-r--r--. 1 boinc boinc      6392 Jun  4 11:25 init_data.xml
[2025-06-04 18:19:54] -rw-r--r--. 2 boinc boinc     15093 Jun  4 11:25 start_atlas.sh
[2025-06-04 18:19:54] drwxrwx--x. 2 boinc boinc        68 Jun  4 11:25 shared
[2025-06-04 18:19:54] -rw-r--r--. 2 boinc boinc    508880 Jun  4 11:25 input.tar.gz
[2025-06-04 18:19:54] -rw-r--r--. 1 boinc boinc         0 Jun  4 11:25 boinc_lockfile
[2025-06-04 18:19:54] -rw-r--r--. 1 boinc boinc      2525 Jun  4 11:25 pandaJob.out
[2025-06-04 18:19:54] -rw-------. 1 boinc boinc    986766 Jun  4 11:28 agis_schedconf.cvmfs.json
[2025-06-04 18:19:54] drwx------. 4 boinc boinc      4096 Jun  4 11:28 pilot3
[2025-06-04 18:19:54] -rw-------. 1 boinc boinc 183263728 Jun  4 15:19 HITS.45006595._044429.pool.root.1
[2025-06-04 18:19:54] -rw-r--r--. 1 boinc boinc       531 Jun  4 15:19 boinc_task_state.xml
[2025-06-04 18:19:54] -rw-------. 1 boinc boinc      1019 Jun  4 15:20 memory_monitor_summary.json
[2025-06-04 18:19:54] -rw-------. 1 boinc boinc   1598969 Jun  4 15:20 agis_ddmendpoints.agis.ALL.json
[2025-06-04 18:19:54] -rw-------. 1 boinc boinc    386575 Jun  4 15:20 log.45006595._044429.job.log.tgz.1
[2025-06-04 18:19:54] -rw-------. 1 boinc boinc        95 Jun  4 15:21 pilot_heartbeat.json
[2025-06-04 18:19:54] -rw-------. 1 boinc boinc      7691 Jun  4 15:22 heartbeat.json
[2025-06-04 18:19:54] -rw-------. 1 boinc boinc      4539 Jun  4 15:22 pilotlog.txt
[2025-06-04 18:19:54] -rw-------. 1 boinc boinc   1200503 Jun  4 15:22 log.45006595._044429.job.log.1
[2025-06-04 18:19:54] -rw-------. 1 boinc boinc       357 Jun  4 15:22 output.list
[2025-06-04 18:19:54] -rw-r--r--. 1 boinc boinc       620 Jun  4 15:22 runtime_log
[2025-06-04 18:19:54] -rw-------. 1 boinc boinc   1607680 Jun  4 15:22 result.tar.gz
[2025-06-04 18:19:54] -rw-r--r--. 1 boinc boinc      8659 Jun  4 15:22 runtime_log.err
[2025-06-04 18:19:54] -rw-------. 1 boinc boinc       657 Jun  4 15:22 EGNODmT2mg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm4ylKDmosIrNn.diag
[2025-06-04 18:19:54] -rw-r--r--. 1 boinc boinc      8192 Jun  4 18:19 boinc_mmap_file
[2025-06-04 18:19:54] -rw-r--r--. 1 boinc boinc        28 Jun  4 18:19 wrapper_checkpoint.txt
[2025-06-04 18:19:54] -rw-r--r--. 1 boinc boinc     20510 Jun  4 18:19 stderr.txt
[2025-06-04 18:19:54] HITS file was successfully produced:
[2025-06-04 18:19:54] -rw-------. 1 boinc boinc 183263728 Jun  4 15:19 shared/HITS.pool.root.1
[2025-06-04 18:19:54]  *** Contents of shared directory: ***
[2025-06-04 18:19:54] total 392160
[2025-06-04 18:19:54] -rw-r--r--. 2 boinc boinc 216163858 Jun  4 11:25 ATLAS.root_0
[2025-06-04 18:19:54] -rw-r--r--. 2 boinc boinc     15093 Jun  4 11:25 start_atlas.sh
[2025-06-04 18:19:54] -rw-r--r--. 2 boinc boinc    508880 Jun  4 11:25 input.tar.gz
[2025-06-04 18:19:54] -rw-------. 1 boinc boinc 183263728 Jun  4 15:19 HITS.pool.root.1
[2025-06-04 18:19:54] -rw-------. 1 boinc boinc   1607680 Jun  4 15:22 result.tar.gz
18:19:56 (23648): run_atlas exited; CPU time 51351.029028
18:19:56 (23648): called boinc_finish(0)

</stderr_txt>
]]>

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