Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:40:59 (802430): wrapper (7.7.26015): starting
13:40:59 (802430): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 13:40:59] Arguments: --nthreads 8
[2025-06-03 13:40:59] Threads: 8
[2025-06-03 13:40:59] Checking for CVMFS
[2025-06-03 13:41:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 13:41:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 13:41:00] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 13:41:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 13:41:00] 2.12.6.0 3733875 171395 395260 146750 0 184 23622161 32935936 3664 130560 1 380979949 99.638 384267589 25463 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 13:41:00] CVMFS is ok
[2025-06-03 13:41:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 13:41:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 13:41:00] Further information can be found at the LHC@home message board.
[2025-06-03 13:41:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 13:41:00] Checking for apptainer binary...
[2025-06-03 13:41:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 13:41:00] Running /usr/bin/apptainer --version
[2025-06-03 13:41:00] apptainer version 1.4.1-1.el9
[2025-06-03 13:41:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 13:41:00] c-6-2.aglt2.org
[2025-06-03 13:41:00] apptainer works
[2025-06-03 13:41:00] Set ATHENA_PROC_NUMBER=8
[2025-06-03 13:41:00] Set ATHENA_CORE_NUMBER=8
[2025-06-03 13:41:00] Starting ATLAS job with PandaID=6677676660
[2025-06-03 13:41:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 17:46:57]  *** The last 200 lines of the pilot log: ***
[2025-06-03 17:46:57] 2025-06-03 21:13:41,870 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 17:46:57] 2025-06-03 21:13:41,870 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 17:46:57] 2025-06-03 21:13:41,870 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 17:46:57] 2025-06-03 21:13:41,870 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 17:46:57] 2025-06-03 21:13:41,899 | INFO     | fitting pss+swap vs Time
[2025-06-03 17:46:57] 2025-06-03 21:13:41,900 | INFO     | sum of square deviations: 2830988869.875588
[2025-06-03 17:46:57] 2025-06-03 21:13:41,901 | INFO     | sum of deviations: 52578388067.01912
[2025-06-03 17:46:57] 2025-06-03 21:13:41,912 | INFO     | mean x: 1748978840.3253589
[2025-06-03 17:46:57] 2025-06-03 21:13:41,912 | INFO     | mean y: 2073189.4114832536
[2025-06-03 17:46:57] 2025-06-03 21:13:41,912 | INFO     | -- intersect: -32480741973.21861
[2025-06-03 17:46:57] 2025-06-03 21:13:41,912 | INFO     | intersect: -32480741973.21861
[2025-06-03 17:46:57] 2025-06-03 21:13:41,913 | INFO     | chi2: 4.0594047611230355
[2025-06-03 17:46:57] 2025-06-03 21:13:41,913 | INFO     | sum of square deviations: 2632648954.995106
[2025-06-03 17:46:57] 2025-06-03 21:13:41,915 | INFO     | sum of deviations: 62043040214.8628
[2025-06-03 17:46:57] 2025-06-03 21:13:41,915 | INFO     | mean x: 1748978687.8284314
[2025-06-03 17:46:57] 2025-06-03 21:13:41,915 | INFO     | mean y: 2080318.1960784313
[2025-06-03 17:46:57] 2025-06-03 21:13:41,915 | INFO     | -- intersect: -41215703335.78868
[2025-06-03 17:46:57] 2025-06-03 21:13:41,915 | INFO     | intersect: -41215703335.78868
[2025-06-03 17:46:57] 2025-06-03 21:13:41,920 | INFO     | chi2: 3.419895454373131
[2025-06-03 17:46:57] 2025-06-03 21:13:41,920 | INFO     | current chi2=3.419895454373131 (change=15.753770426504207 %)
[2025-06-03 17:46:57] 2025-06-03 21:13:41,920 | INFO     | right removable region: 203
[2025-06-03 17:46:57] 2025-06-03 21:13:41,921 | INFO     | sum of square deviations: 2632620224.3333464
[2025-06-03 17:46:57] 2025-06-03 21:13:41,922 | INFO     | sum of deviations: 9908461662.166664
[2025-06-03 17:46:57] 2025-06-03 21:13:41,922 | INFO     | mean x: 1748978992.8333333
[2025-06-03 17:46:57] 2025-06-03 21:13:41,923 | INFO     | mean y: 2105894.151960784
[2025-06-03 17:46:57] 2025-06-03 21:13:41,923 | INFO     | -- intersect: -6580572130.671128
[2025-06-03 17:46:57] 2025-06-03 21:13:41,923 | INFO     | intersect: -6580572130.671128
[2025-06-03 17:46:57] 2025-06-03 21:13:41,923 | INFO     | chi2: 1.6833454726227375
[2025-06-03 17:46:57] 2025-06-03 21:13:41,923 | INFO     | current chi2=1.6833454726227375 (change=58.53220923559641 %)
[2025-06-03 17:46:57] 2025-06-03 21:13:41,924 | INFO     | sum of square deviations: 2443740128.7638164
[2025-06-03 17:46:57] 2025-06-03 21:13:41,925 | INFO     | sum of deviations: -15118906414.185928
[2025-06-03 17:46:57] 2025-06-03 21:13:41,925 | INFO     | mean x: 1748979145.3417087
[2025-06-03 17:46:57] 2025-06-03 21:13:41,925 | INFO     | mean y: 2126023.311557789
[2025-06-03 17:46:57] 2025-06-03 21:13:41,926 | INFO     | -- intersect: 10822692296.927727
[2025-06-03 17:46:57] 2025-06-03 21:13:41,926 | INFO     | intersect: 10822692296.927727
[2025-06-03 17:46:57] 2025-06-03 21:13:41,926 | INFO     | chi2: 0.8367156987572568
[2025-06-03 17:46:57] 2025-06-03 21:13:41,926 | INFO     | current chi2=0.8367156987572568 (change=50.29447535486513 %)
[2025-06-03 17:46:57] 2025-06-03 21:13:41,927 | INFO     | sum of square deviations: 2264116020.6649337
[2025-06-03 17:46:57] 2025-06-03 21:13:41,928 | INFO     | sum of deviations: -16791864065.695877
[2025-06-03 17:46:57] 2025-06-03 21:13:41,928 | INFO     | mean x: 1748979297.8505154
[2025-06-03 17:46:57] 2025-06-03 21:13:41,928 | INFO     | mean y: 2127379.4587628865
[2025-06-03 17:46:57] 2025-06-03 21:13:41,928 | INFO     | -- intersect: 12973469110.699635
[2025-06-03 17:46:57] 2025-06-03 21:13:41,929 | INFO     | intersect: 12973469110.699635
[2025-06-03 17:46:57] 2025-06-03 21:13:41,929 | INFO     | chi2: 0.7913404136287518
[2025-06-03 17:46:57] 2025-06-03 21:13:41,929 | INFO     | current chi2=0.7913404136287518 (change=5.4230230406695155 %)
[2025-06-03 17:46:57] 2025-06-03 21:13:41,929 | INFO     | left removable region: 30
[2025-06-03 17:46:57] 2025-06-03 21:13:41,930 | INFO     | sum of square deviations: 1605549860.820808
[2025-06-03 17:46:57] 2025-06-03 21:13:41,931 | INFO     | sum of deviations: 1361742854.0346823
[2025-06-03 17:46:57] 2025-06-03 21:13:41,931 | INFO     | mean x: 1748979572.3815029
[2025-06-03 17:46:57] 2025-06-03 21:13:41,931 | INFO     | mean y: 2129267.6358381505
[2025-06-03 17:46:57] 2025-06-03 21:13:41,931 | INFO     | -- intersect: -1481263115.6599169
[2025-06-03 17:46:57] 2025-06-03 21:13:41,931 | INFO     | intersect: -1481263115.6599169
[2025-06-03 17:46:57] 2025-06-03 21:13:41,932 | INFO     | chi2: 0.07712544887670167
[2025-06-03 17:46:57] 2025-06-03 21:13:41,932 | INFO     | -- intersect: -1481263115.6599169
[2025-06-03 17:46:57] 2025-06-03 21:13:41,932 | INFO     | current memory leak: 0.85 B/s (using 173 data points, chi2=0.08)
[2025-06-03 17:46:57] 2025-06-03 21:13:41,933 | INFO     | ..............................
[2025-06-03 17:46:57] 2025-06-03 21:13:41,933 | INFO     | . Timing measurements:
[2025-06-03 17:46:57] 2025-06-03 21:13:41,933 | INFO     | . get job = 0 s
[2025-06-03 17:46:57] 2025-06-03 21:13:41,933 | INFO     | . initial setup = 2 s
[2025-06-03 17:46:57] 2025-06-03 21:13:41,933 | INFO     | . payload setup = 6 s
[2025-06-03 17:46:57] 2025-06-03 21:13:41,934 | INFO     | . stage-in = 0 s
[2025-06-03 17:46:57] 2025-06-03 21:13:41,934 | INFO     | . payload execution = 12698 s
[2025-06-03 17:46:57] 2025-06-03 21:13:41,934 | INFO     | . stage-out = 4 s
[2025-06-03 17:46:57] 2025-06-03 21:13:41,934 | INFO     | . log creation = 0 s
[2025-06-03 17:46:57] 2025-06-03 21:13:41,934 | INFO     | ..............................
[2025-06-03 17:46:57] 2025-06-03 21:13:42,205 | INFO     | 
[2025-06-03 17:46:57] 2025-06-03 21:13:42,205 | INFO     | job summary report
[2025-06-03 17:46:57] 2025-06-03 21:13:42,205 | INFO     | --------------------------------------------------
[2025-06-03 17:46:57] 2025-06-03 21:13:42,205 | INFO     | PanDA job id: 6677676660
[2025-06-03 17:46:57] 2025-06-03 21:13:42,205 | INFO     | task id: 45006595
[2025-06-03 17:46:57] 2025-06-03 21:13:42,205 | INFO     | errors: (none)
[2025-06-03 17:46:57] 2025-06-03 21:13:42,205 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 17:46:57] 2025-06-03 21:13:42,205 | INFO     | pilot state: finished 
[2025-06-03 17:46:57] 2025-06-03 21:13:42,206 | INFO     | transexitcode: 0
[2025-06-03 17:46:57] 2025-06-03 21:13:42,206 | INFO     | exeerrorcode: 0
[2025-06-03 17:46:57] 2025-06-03 21:13:42,206 | INFO     | exeerrordiag: 
[2025-06-03 17:46:57] 2025-06-03 21:13:42,206 | INFO     | exitcode: 0
[2025-06-03 17:46:57] 2025-06-03 21:13:42,206 | INFO     | exitmsg: OK
[2025-06-03 17:46:57] 2025-06-03 21:13:42,206 | INFO     | cpuconsumptiontime: 43259 s
[2025-06-03 17:46:57] 2025-06-03 21:13:42,206 | INFO     | nevents: 400
[2025-06-03 17:46:57] 2025-06-03 21:13:42,206 | INFO     | neventsw: 0
[2025-06-03 17:46:57] 2025-06-03 21:13:42,206 | INFO     | pid: 813365
[2025-06-03 17:46:57] 2025-06-03 21:13:42,206 | INFO     | pgrp: 813365
[2025-06-03 17:46:57] 2025-06-03 21:13:42,207 | INFO     | corecount: 8
[2025-06-03 17:46:57] 2025-06-03 21:13:42,207 | INFO     | event service: False
[2025-06-03 17:46:57] 2025-06-03 21:13:42,207 | INFO     | sizes: {0: 2404356, 1: 2405212, 5: 2405418, 12: 2405474, 12710: 2435137, 12715: 2444078, 12716: 2444262, 12737: 2444432}
[2025-06-03 17:46:57] 2025-06-03 21:13:42,207 | INFO     | --------------------------------------------------
[2025-06-03 17:46:57] 2025-06-03 21:13:42,207 | INFO     | 
[2025-06-03 17:46:57] 2025-06-03 21:13:42,207 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-03 17:46:57] 2025-06-03 21:13:42,269 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 17:46:57] 2025-06-03 21:13:42,269 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 17:46:57] 2025-06-03 21:13:42,269 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 17:46:57] 2025-06-03 21:13:42,270 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 17:46:57] 2025-06-03 21:13:42,270 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 17:46:57] 2025-06-03 21:13:42,270 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 17:46:57] 2025-06-03 21:13:42,270 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 17:46:57] 2025-06-03 21:13:42,270 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 17:46:57] 2025-06-03 21:13:42,270 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 17:46:57] 2025-06-03 21:13:42,270 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 17:46:57] 2025-06-03 21:13:42,270 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 17:46:57] 2025-06-03 21:13:42,271 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 17:46:57] 2025-06-03 21:13:42,271 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 17:46:57] 2025-06-03 21:13:42,271 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 17:46:57] 2025-06-03 21:13:42,271 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 17:46:57] 2025-06-03 21:13:42,271 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 17:46:57] 2025-06-03 21:13:42,271 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 17:46:57] 2025-06-03 21:13:42,271 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 17:46:57] 2025-06-03 21:13:42,271 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 17:46:57] 2025-06-03 21:13:42,271 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 17:46:57] 2025-06-03 21:13:42,272 | INFO     | job 6677676660 has completed (purged errors)
[2025-06-03 17:46:57] 2025-06-03 21:13:42,272 | INFO     | overall cleanup function is called
[2025-06-03 17:46:57] 2025-06-03 21:13:42,446 | INFO     | PID=806016 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-06-03 17:46:57] 2025-06-03 21:13:42,446 | INFO     | .. there are 32 such processes running
[2025-06-03 17:46:57] 2025-06-03 21:13:43,282 | INFO     | --- collectZombieJob: --- 10, [813365]
[2025-06-03 17:46:57] 2025-06-03 21:13:43,282 | INFO     | zombie collector waiting for pid 813365
[2025-06-03 17:46:57] 2025-06-03 21:13:43,282 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 17:46:57] 2025-06-03 21:13:43,283 | INFO     | collected zombie processes
[2025-06-03 17:46:57] 2025-06-03 21:13:43,283 | INFO     | will attempt to kill all subprocesses of pid=813365
[2025-06-03 17:46:57] 2025-06-03 21:13:43,882 | INFO     | process IDs to be killed: [813365] (in reverse order)
[2025-06-03 17:46:57] 2025-06-03 21:13:44,032 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 17:46:57] 2025-06-03 21:13:44,032 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 17:46:57] 2025-06-03 21:13:44,055 | INFO     | did not find any defunct processes belonging to 813365
[2025-06-03 17:46:57] 2025-06-03 21:13:44,070 | INFO     | did not find any defunct processes belonging to 813365
[2025-06-03 17:46:57] 2025-06-03 21:13:44,071 | INFO     | ready for new job
[2025-06-03 17:46:57] 2025-06-03 21:13:44,071 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 17:46:57] 2025-06-03 21:13:44,073 | INFO     | **************************************
[2025-06-03 17:46:57] 2025-06-03 21:13:44,073 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 17:46:57] 2025-06-03 21:13:44,073 | INFO     | **************************************
[2025-06-03 17:46:57] 2025-06-03 21:13:44,074 | INFO     | 
[2025-06-03 17:46:57] 2025-06-03 21:13:44,095 | INFO     | architecture information:
[2025-06-03 17:46:57] 2025-06-03 21:13:44,103 | INFO     | executing command: cat /etc/os-release
[2025-06-03 17:46:57] 2025-06-03 21:13:44,134 | INFO     | cat /etc/os-release:
[2025-06-03 17:46:57] NAME="CentOS Linux"
[2025-06-03 17:46:57] VERSION="7 (Core)"
[2025-06-03 17:46:57] ID="centos"
[2025-06-03 17:46:57] ID_LIKE="rhel fedora"
[2025-06-03 17:46:57] VERSION_ID="7"
[2025-06-03 17:46:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 17:46:57] ANSI_COLOR="0;31"
[2025-06-03 17:46:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 17:46:57] HOME_URL="https://www.centos.org/"
[2025-06-03 17:46:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 17:46:57] 
[2025-06-03 17:46:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 17:46:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 17:46:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 17:46:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 17:46:57] 
[2025-06-03 17:46:57] 2025-06-03 21:13:44,135 | INFO     | **************************************
[2025-06-03 17:46:57] 2025-06-03 21:13:44,663 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-03 17:46:57] 2025-06-03 21:13:44,721 | INFO     | sufficient remaining disk space (74155294720 B)
[2025-06-03 17:46:57] 2025-06-03 21:13:44,721 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 17:46:57] 2025-06-03 21:13:44,722 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 17:46:57] 2025-06-03 21:13:44,722 | INFO     | update_server=False
[2025-06-03 17:46:57] 2025-06-03 21:13:44,722 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 17:46:57] 2025-06-03 21:13:44,722 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 17:46:57] 2025-06-03 21:13:44,722 | INFO     | aborting loop
[2025-06-03 17:46:57] 2025-06-03 21:13:44,723 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 17:46:57] 2025-06-03 21:13:44,723 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 17:46:57] 2025-06-03 21:13:44,723 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 17:46:57] 2025-06-03 21:13:44,723 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 17:46:57] 2025-06-03 21:13:44,944 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 17:46:57] 2025-06-03 21:13:45,120 | INFO     | all data control threads have been joined
[2025-06-03 17:46:57] 2025-06-03 21:13:45,683 | INFO     | all payload control threads have been joined
[2025-06-03 17:46:57] 2025-06-03 21:13:45,700 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 17:46:57] 2025-06-03 21:13:45,728 | INFO     | [job] retrieve thread has finished
[2025-06-03 17:46:57] 2025-06-03 21:13:45,751 | INFO     | [job] job monitor thread has finished
[2025-06-03 17:46:57] 2025-06-03 21:13:45,767 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 17:46:57] 2025-06-03 21:13:45,803 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 17:46:57] 2025-06-03 21:13:45,807 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 17:46:57] 2025-06-03 21:13:45,946 | INFO     | [payload] validate_post thread has finished
[2025-06-03 17:46:57] 2025-06-03 21:13:46,080 | INFO     | all job control threads have been joined
[2025-06-03 17:46:57] 2025-06-03 21:13:46,126 | INFO     | [data] control thread has finished
[2025-06-03 17:46:57] 2025-06-03 21:13:46,634 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 17:46:57] 2025-06-03 21:13:46,690 | INFO     | [payload] control thread has finished
[2025-06-03 17:46:57] 2025-06-03 21:13:46,779 | INFO     | [payload] failed_post thread has finished
[2025-06-03 17:46:57] 2025-06-03 21:13:47,045 | INFO     | [data] copytool_in thread has finished
[2025-06-03 17:46:57] 2025-06-03 21:13:47,049 | INFO     | [job] validate thread has finished
[2025-06-03 17:46:57] 2025-06-03 21:13:47,087 | INFO     | [job] control thread has finished
[2025-06-03 17:46:57] 2025-06-03 21:13:47,219 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 17:46:57] 2025-06-03 21:13:47,707 | INFO     | [data] copytool_out thread has finished
[2025-06-03 17:46:57] 2025-06-03 21:13:48,232 | INFO     | [job] queue monitor thread has finished
[2025-06-03 17:46:57] 2025-06-03 21:13:48,956 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 17:46:57] 2025-06-03 21:13:51,004 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140091389269824)>', '<ExcThread(monitor, started 140090760230656)>']
[2025-06-03 17:46:57] 2025-06-03 21:13:51,795 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 17:46:57] 2025-06-03 21:13:51,796 | INFO     | [monitor] control thread has ended
[2025-06-03 17:46:57] 2025-06-03 21:13:56,031 | INFO     | all workflow threads have been joined
[2025-06-03 17:46:57] 2025-06-03 21:13:56,036 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 17:46:57] 2025-06-03 21:13:56,037 | INFO     | traces error code: 0
[2025-06-03 17:46:57] 2025-06-03 21:13:56,037 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 17:46:57] 2025-06-03 21:13:56,393 [wrapper] ==== pilot stdout END ====
[2025-06-03 17:46:57] 2025-06-03 21:13:56,400 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 17:46:57] 2025-06-03 21:13:56,416 [wrapper] pilotpid: 806016
[2025-06-03 17:46:57] 2025-06-03 21:13:56,461 [wrapper] Pilot exit status: 0
[2025-06-03 17:46:57] 2025-06-03 21:13:56,537 [wrapper] pandaids: 6677676660
[2025-06-03 17:46:57] 2025-06-03 21:13:57,034 [wrapper] cleanup supervisor_pilot 2881292 806017
[2025-06-03 17:46:57] 2025-06-03 21:13:57,039 [wrapper] Test setup, not cleaning
[2025-06-03 17:46:57] 2025-06-03 21:13:57,043 [wrapper] apfmon messages muted
[2025-06-03 17:46:57] 2025-06-03 21:13:57,074 [wrapper] ==== wrapper stdout END ====
[2025-06-03 17:46:57] 2025-06-03 21:13:57,106 [wrapper] ==== wrapper stderr END ====
[2025-06-03 17:46:57]  *** Error codes and diagnostics ***
[2025-06-03 17:46:57]     "exeErrorCode": 0,
[2025-06-03 17:46:57]     "exeErrorDiag": "",
[2025-06-03 17:46:57]     "pilotErrorCode": 0,
[2025-06-03 17:46:57]     "pilotErrorDiag": "",
[2025-06-03 17:46:57]  *** Listing of results directory ***
[2025-06-03 17:46:57] total 398060
[2025-06-03 17:46:57] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 10:52 pilot3.tar.gz
[2025-06-03 17:46:57] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 11:16 queuedata.json
[2025-06-03 17:46:57] -rwx------. 1 boincer umatlas     37140 Jun  3 11:16 runpilot2-wrapper.sh
[2025-06-03 17:46:57] -rw-r--r--. 1 boincer umatlas       100 Jun  3 13:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 17:46:57] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 13:40 run_atlas
[2025-06-03 17:46:57] -rw-r--r--. 1 boincer umatlas       105 Jun  3 13:40 job.xml
[2025-06-03 17:46:57] -rw-r--r--. 2 boincer umatlas 217305694 Jun  3 13:40 EVNT.45006593._001476.pool.root.1
[2025-06-03 17:46:57] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 13:40 start_atlas.sh
[2025-06-03 17:46:57] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 13:40 shared
[2025-06-03 17:46:57] -rw-r--r--. 2 boincer umatlas    508883 Jun  3 13:40 input.tar.gz
[2025-06-03 17:46:57] -rw-r--r--. 1 boincer umatlas         0 Jun  3 13:40 boinc_lockfile
[2025-06-03 17:46:57] -rw-r--r--. 1 boincer umatlas      2525 Jun  3 13:41 pandaJob.out
[2025-06-03 17:46:57] -rw-------. 1 boincer umatlas    985078 Jun  3 13:41 agis_schedconf.cvmfs.json
[2025-06-03 17:46:57] drwx------. 4 boincer umatlas      4096 Jun  3 13:41 pilot3
[2025-06-03 17:46:57] -rw-------. 1 boincer umatlas 183574636 Jun  3 17:12 HITS.45006595._036750.pool.root.1
[2025-06-03 17:46:57] -rw-r--r--. 1 boincer umatlas       530 Jun  3 17:12 boinc_task_state.xml
[2025-06-03 17:46:57] -rw-------. 1 boincer umatlas      1041 Jun  3 17:13 memory_monitor_summary.json
[2025-06-03 17:46:57] -rw-------. 1 boincer umatlas   1603667 Jun  3 17:13 agis_ddmendpoints.agis.ALL.json
[2025-06-03 17:46:57] -rw-------. 1 boincer umatlas    391727 Jun  3 17:13 log.45006595._036750.job.log.tgz.1
[2025-06-03 17:46:57] -rw-------. 1 boincer umatlas        95 Jun  3 17:13 pilot_heartbeat.json
[2025-06-03 17:46:57] -rw-------. 1 boincer umatlas      7717 Jun  3 17:13 heartbeat.json
[2025-06-03 17:46:57] -rw-------. 1 boincer umatlas      4476 Jun  3 17:13 pilotlog.txt
[2025-06-03 17:46:57] -rw-------. 1 boincer umatlas   1056584 Jun  3 17:13 log.45006595._036750.job.log.1
[2025-06-03 17:46:57] -rw-------. 1 boincer umatlas       357 Jun  3 17:13 output.list
[2025-06-03 17:46:57] -rw-r--r--. 1 boincer umatlas       620 Jun  3 17:13 runtime_log
[2025-06-03 17:46:57] -rw-------. 1 boincer umatlas   1464320 Jun  3 17:13 result.tar.gz
[2025-06-03 17:46:57] -rw-r--r--. 1 boincer umatlas      8645 Jun  3 17:13 runtime_log.err
[2025-06-03 17:46:57] -rw-------. 1 boincer umatlas       652 Jun  3 17:13 MoMLDmSYig7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfmkKDmZerYzn.diag
[2025-06-03 17:46:57] -rw-r--r--. 1 boincer umatlas      6656 Jun  3 17:46 init_data.xml
[2025-06-03 17:46:57] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 17:46 boinc_mmap_file
[2025-06-03 17:46:57] -rw-r--r--. 1 boincer umatlas        27 Jun  3 17:46 wrapper_checkpoint.txt
[2025-06-03 17:46:57] -rw-r--r--. 1 boincer umatlas     21002 Jun  3 17:46 stderr.txt
[2025-06-03 17:46:57] HITS file was successfully produced:
[2025-06-03 17:46:57] -rw-------. 1 boincer umatlas 183574636 Jun  3 17:12 shared/HITS.pool.root.1
[2025-06-03 17:46:57]  *** Contents of shared directory: ***
[2025-06-03 17:46:57] total 393448
[2025-06-03 17:46:57] -rw-r--r--. 2 boincer umatlas 217305694 Jun  3 13:40 ATLAS.root_0
[2025-06-03 17:46:57] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 13:40 start_atlas.sh
[2025-06-03 17:46:57] -rw-r--r--. 2 boincer umatlas    508883 Jun  3 13:40 input.tar.gz
[2025-06-03 17:46:57] -rw-------. 1 boincer umatlas 183574636 Jun  3 17:12 HITS.pool.root.1
[2025-06-03 17:46:57] -rw-------. 1 boincer umatlas   1464320 Jun  3 17:13 result.tar.gz
17:46:59 (802430): run_atlas exited; CPU time 43763.758658
17:46:59 (802430): called boinc_finish(0)

</stderr_txt>
]]>

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