Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
02:36:22 (3392125): wrapper (7.7.26015): starting
02:36:22 (3392125): wrapper: running run_atlas (--nthreads 4)
[2025-06-04 02:36:22] Arguments: --nthreads 4
[2025-06-04 02:36:22] Threads: 4
[2025-06-04 02:36:22] Checking for CVMFS
[2025-06-04 02:36:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 02:36:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 02:36:22] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 02:36:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 02:36:22] 2.9.2.0 2645185 1937 90812 146762 0 55 29748987 36864000 0 130560 0 1997360 99.993 516657 42713 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-06-04 02:36:22] CVMFS is ok
[2025-06-04 02:36:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 02:36:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 02:36:22] Further information can be found at the LHC@home message board.
[2025-06-04 02:36:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 02:36:22] Checking for apptainer binary...
[2025-06-04 02:36:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 02:36:22] Running /usr/bin/apptainer --version
[2025-06-04 02:36:22] apptainer version 1.3.6-6.1
[2025-06-04 02:36:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 02:36:22] belleA267b
[2025-06-04 02:36:22] apptainer works
[2025-06-04 02:36:22] Set ATHENA_PROC_NUMBER=4
[2025-06-04 02:36:22] Set ATHENA_CORE_NUMBER=4
[2025-06-04 02:36:22] Starting ATLAS job with PandaID=6677576552
[2025-06-04 02:36:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 03:41:49]  *** The last 200 lines of the pilot log: ***
[2025-06-04 03:41:49]  filetype=log
[2025-06-04 03:41:49]  guid=641c929a-ce3e-4a61-8bd5-44974bca77d1
[2025-06-04 03:41:49]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 03:41:49]  is_altstaged=None
[2025-06-04 03:41:49]  is_tar=False
[2025-06-04 03:41:49]  lfn=log.45006595._028853.job.log.tgz.1
[2025-06-04 03:41:49]  mtime=0
[2025-06-04 03:41:49]  protocol_id=None
[2025-06-04 03:41:49]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 03:41:49]  replicas=None
[2025-06-04 03:41:49]  scope=mc23_13p6TeV
[2025-06-04 03:41:49]  status=None
[2025-06-04 03:41:49]  status_code=0
[2025-06-04 03:41:49]  storage_token=
[2025-06-04 03:41:49]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6677576552/log.45006595._028853.job.log.tgz.1
[2025-06-04 03:41:49]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b1/0f/log.45006595._028853.job.log.tgz.1
[2025-06-04 03:41:49]  workdir=None
[2025-06-04 03:41:49] ]
[2025-06-04 03:41:49] 2025-06-04 01:41:23,655 | INFO     | transferring file log.45006595._028853.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6677576552/log.45006595._028853.job.log.tgz.1 to /local/data/boinc/
[2025-06-04 03:41:49] 2025-06-04 01:41:23,655 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6677576552/log.45006595._028853.job.log.tgz.1 /local/data/boinc/slots/0/log.45006595._0288
[2025-06-04 03:41:49] 2025-06-04 01:41:23,674 | INFO     | adding to output.list: log.45006595._028853.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b1/0f/log.45006595._028853.job.log.tg
[2025-06-04 03:41:49] 2025-06-04 01:41:23,674 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 03:41:49] 2025-06-04 01:41:23,675 | INFO     | summary of transferred files:
[2025-06-04 03:41:49] 2025-06-04 01:41:23,675 | INFO     |  -- lfn=log.45006595._028853.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 03:41:49] 2025-06-04 01:41:23,675 | INFO     | stage-out finished correctly
[2025-06-04 03:41:49] 2025-06-04 01:41:23,716 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 03:41:49] 2025-06-04 01:41:25,010 | INFO     | monitor loop #301: job 0:6677576552 is in state 'finished'
[2025-06-04 03:41:49] 2025-06-04 01:41:25,010 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 03:41:49] 2025-06-04 01:41:25,967 | INFO     | job 6677576552 has state=finished
[2025-06-04 03:41:49] 2025-06-04 01:41:25,967 | INFO     | preparing for final server update for job 6677576552 in state='finished'
[2025-06-04 03:41:49] 2025-06-04 01:41:25,968 | INFO     | this job has now completed (state=finished)
[2025-06-04 03:41:49] 2025-06-04 01:41:25,968 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 03:41:49] 2025-06-04 01:41:25,968 | INFO     | log transfer has been attempted: DONE
[2025-06-04 03:41:49] 2025-06-04 01:41:25,968 | INFO     | job 6677576552 has finished - writing final server update
[2025-06-04 03:41:49] 2025-06-04 01:41:25,968 | INFO     | total number of processed events: 400 (read)
[2025-06-04 03:41:49] 2025-06-04 01:41:25,970 | INFO     | executing command: lscpu
[2025-06-04 03:41:49] 2025-06-04 01:41:25,992 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 03:41:49] 2025-06-04 01:41:27,513 | INFO     | monitor loop #302: job 0:6677576552 is in state 'finished'
[2025-06-04 03:41:49] 2025-06-04 01:41:27,513 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 03:41:49] 2025-06-04 01:41:29,483 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 03:41:49] 2025-06-04 01:41:29,483 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6677576552/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 03:41:49] 2025-06-04 01:41:29,484 | INFO     | extracted standard info from prmon json
[2025-06-04 03:41:49] 2025-06-04 01:41:29,484 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 03:41:49] 2025-06-04 01:41:29,484 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 03:41:49] 2025-06-04 01:41:29,484 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 03:41:49] 2025-06-04 01:41:29,484 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 03:41:49] 2025-06-04 01:41:29,485 | INFO     | fitting pss+swap vs Time
[2025-06-04 03:41:49] 2025-06-04 01:41:29,485 | INFO     | sum of square deviations: 57407588.0
[2025-06-04 03:41:49] 2025-06-04 01:41:29,485 | INFO     | sum of deviations: 418851253.99999976
[2025-06-04 03:41:49] 2025-06-04 01:41:29,485 | INFO     | mean x: 1748999427.0
[2025-06-04 03:41:49] 2025-06-04 01:41:29,485 | INFO     | mean y: 2725458.0701754387
[2025-06-04 03:41:49] 2025-06-04 01:41:29,485 | INFO     | -- intersect: -12758141681.030514
[2025-06-04 03:41:49] 2025-06-04 01:41:29,485 | INFO     | intersect: -12758141681.030514
[2025-06-04 03:41:49] 2025-06-04 01:41:29,485 | INFO     | chi2: 0.0007278716853146985
[2025-06-04 03:41:49] 2025-06-04 01:41:29,485 | INFO     | -- intersect: -12758141681.030514
[2025-06-04 03:41:49] 2025-06-04 01:41:29,485 | INFO     | current memory leak: 7.30 B/s (using 57 data points, chi2=0.00)
[2025-06-04 03:41:49] 2025-06-04 01:41:29,485 | INFO     | ..............................
[2025-06-04 03:41:49] 2025-06-04 01:41:29,486 | INFO     | . Timing measurements:
[2025-06-04 03:41:49] 2025-06-04 01:41:29,486 | INFO     | . get job = 0 s
[2025-06-04 03:41:49] 2025-06-04 01:41:29,486 | INFO     | . initial setup = 1 s
[2025-06-04 03:41:49] 2025-06-04 01:41:29,486 | INFO     | . payload setup = 5 s
[2025-06-04 03:41:49] 2025-06-04 01:41:29,486 | INFO     | . stage-in = 0 s
[2025-06-04 03:41:49] 2025-06-04 01:41:29,486 | INFO     | . payload execution = 3869 s
[2025-06-04 03:41:49] 2025-06-04 01:41:29,486 | INFO     | . stage-out = 0 s
[2025-06-04 03:41:49] 2025-06-04 01:41:29,486 | INFO     | . log creation = 0 s
[2025-06-04 03:41:49] 2025-06-04 01:41:29,486 | INFO     | ..............................
[2025-06-04 03:41:49] 2025-06-04 01:41:29,943 | INFO     | 
[2025-06-04 03:41:49] 2025-06-04 01:41:29,944 | INFO     | job summary report
[2025-06-04 03:41:49] 2025-06-04 01:41:29,944 | INFO     | --------------------------------------------------
[2025-06-04 03:41:49] 2025-06-04 01:41:29,944 | INFO     | PanDA job id: 6677576552
[2025-06-04 03:41:49] 2025-06-04 01:41:29,944 | INFO     | task id: 45006595
[2025-06-04 03:41:49] 2025-06-04 01:41:29,944 | INFO     | errors: (none)
[2025-06-04 03:41:49] 2025-06-04 01:41:29,944 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 03:41:49] 2025-06-04 01:41:29,944 | INFO     | pilot state: finished 
[2025-06-04 03:41:49] 2025-06-04 01:41:29,944 | INFO     | transexitcode: 0
[2025-06-04 03:41:49] 2025-06-04 01:41:29,944 | INFO     | exeerrorcode: 0
[2025-06-04 03:41:49] 2025-06-04 01:41:29,944 | INFO     | exeerrordiag: 
[2025-06-04 03:41:49] 2025-06-04 01:41:29,944 | INFO     | exitcode: 0
[2025-06-04 03:41:49] 2025-06-04 01:41:29,944 | INFO     | exitmsg: OK
[2025-06-04 03:41:49] 2025-06-04 01:41:29,944 | INFO     | cpuconsumptiontime: 14423 s
[2025-06-04 03:41:49] 2025-06-04 01:41:29,944 | INFO     | nevents: 400
[2025-06-04 03:41:49] 2025-06-04 01:41:29,944 | INFO     | neventsw: 0
[2025-06-04 03:41:49] 2025-06-04 01:41:29,944 | INFO     | pid: 3402462
[2025-06-04 03:41:49] 2025-06-04 01:41:29,944 | INFO     | pgrp: 3402462
[2025-06-04 03:41:49] 2025-06-04 01:41:29,944 | INFO     | corecount: 4
[2025-06-04 03:41:49] 2025-06-04 01:41:29,944 | INFO     | event service: False
[2025-06-04 03:41:49] 2025-06-04 01:41:29,944 | INFO     | sizes: {0: 2405187, 4: 2405393, 11: 2405421, 3877: 2431245, 3878: 2440247, 3879: 2440247, 3884: 2440545}
[2025-06-04 03:41:49] 2025-06-04 01:41:29,944 | INFO     | --------------------------------------------------
[2025-06-04 03:41:49] 2025-06-04 01:41:29,944 | INFO     | 
[2025-06-04 03:41:49] 2025-06-04 01:41:29,945 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-06-04 03:41:49] 2025-06-04 01:41:29,966 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 03:41:49] 2025-06-04 01:41:29,966 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 03:41:49] 2025-06-04 01:41:29,966 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 03:41:49] 2025-06-04 01:41:29,966 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 03:41:49] 2025-06-04 01:41:29,966 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 03:41:49] 2025-06-04 01:41:29,966 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 03:41:49] 2025-06-04 01:41:29,966 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 03:41:49] 2025-06-04 01:41:29,966 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 03:41:49] 2025-06-04 01:41:29,966 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 03:41:49] 2025-06-04 01:41:29,966 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 03:41:49] 2025-06-04 01:41:29,966 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 03:41:49] 2025-06-04 01:41:29,966 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 03:41:49] 2025-06-04 01:41:29,966 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 03:41:49] 2025-06-04 01:41:29,966 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 03:41:49] 2025-06-04 01:41:29,966 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 03:41:49] 2025-06-04 01:41:29,967 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 03:41:49] 2025-06-04 01:41:29,967 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 03:41:49] 2025-06-04 01:41:29,967 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 03:41:49] 2025-06-04 01:41:29,967 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 03:41:49] 2025-06-04 01:41:29,967 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 03:41:49] 2025-06-04 01:41:29,967 | INFO     | job 6677576552 has completed (purged errors)
[2025-06-04 03:41:49] 2025-06-04 01:41:29,967 | INFO     | overall cleanup function is called
[2025-06-04 03:41:49] 2025-06-04 01:41:30,973 | INFO     | --- collectZombieJob: --- 10, [3402462]
[2025-06-04 03:41:49] 2025-06-04 01:41:30,974 | INFO     | zombie collector waiting for pid 3402462
[2025-06-04 03:41:49] 2025-06-04 01:41:30,974 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 03:41:49] 2025-06-04 01:41:30,974 | INFO     | collected zombie processes
[2025-06-04 03:41:49] 2025-06-04 01:41:30,974 | INFO     | will attempt to kill all subprocesses of pid=3402462
[2025-06-04 03:41:49] 2025-06-04 01:41:31,019 | INFO     | process IDs to be killed: [3402462] (in reverse order)
[2025-06-04 03:41:49] 2025-06-04 01:41:31,053 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 03:41:49] 2025-06-04 01:41:31,053 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 03:41:49] 2025-06-04 01:41:31,055 | INFO     | did not find any defunct processes belonging to 3402462
[2025-06-04 03:41:49] 2025-06-04 01:41:31,056 | INFO     | did not find any defunct processes belonging to 3402462
[2025-06-04 03:41:49] 2025-06-04 01:41:31,056 | INFO     | ready for new job
[2025-06-04 03:41:49] 2025-06-04 01:41:31,057 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 03:41:49] 2025-06-04 01:41:31,057 | INFO     | **************************************
[2025-06-04 03:41:49] 2025-06-04 01:41:31,057 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 03:41:49] 2025-06-04 01:41:31,057 | INFO     | **************************************
[2025-06-04 03:41:49] 2025-06-04 01:41:31,057 | INFO     | 
[2025-06-04 03:41:49] 2025-06-04 01:41:31,058 | INFO     | architecture information:
[2025-06-04 03:41:49] 2025-06-04 01:41:31,058 | INFO     | executing command: cat /etc/os-release
[2025-06-04 03:41:49] 2025-06-04 01:41:31,073 | INFO     | cat /etc/os-release:
[2025-06-04 03:41:49] NAME="CentOS Linux"
[2025-06-04 03:41:49] VERSION="7 (Core)"
[2025-06-04 03:41:49] ID="centos"
[2025-06-04 03:41:49] ID_LIKE="rhel fedora"
[2025-06-04 03:41:49] VERSION_ID="7"
[2025-06-04 03:41:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 03:41:49] ANSI_COLOR="0;31"
[2025-06-04 03:41:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 03:41:49] HOME_URL="https://www.centos.org/"
[2025-06-04 03:41:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 03:41:49] 
[2025-06-04 03:41:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 03:41:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 03:41:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 03:41:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 03:41:49] 
[2025-06-04 03:41:49] 2025-06-04 01:41:31,073 | INFO     | **************************************
[2025-06-04 03:41:49] 2025-06-04 01:41:31,576 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-06-04 03:41:49] 2025-06-04 01:41:31,594 | INFO     | sufficient remaining disk space (325735940096 B)
[2025-06-04 03:41:49] 2025-06-04 01:41:31,594 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 03:41:49] 2025-06-04 01:41:31,594 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 03:41:49] 2025-06-04 01:41:31,594 | INFO     | update_server=False
[2025-06-04 03:41:49] 2025-06-04 01:41:31,594 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 03:41:49] 2025-06-04 01:41:31,594 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 03:41:49] 2025-06-04 01:41:31,595 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 03:41:49] 2025-06-04 01:41:31,595 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 03:41:49] 2025-06-04 01:41:31,595 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 03:41:49] 2025-06-04 01:41:31,595 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 03:41:49] 2025-06-04 01:41:31,595 | INFO     | aborting loop
[2025-06-04 03:41:49] 2025-06-04 01:41:31,727 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 03:41:49] 2025-06-04 01:41:31,869 | INFO     | all data control threads have been joined
[2025-06-04 03:41:49] 2025-06-04 01:41:32,572 | INFO     | all payload control threads have been joined
[2025-06-04 03:41:49] 2025-06-04 01:41:32,600 | INFO     | [job] retrieve thread has finished
[2025-06-04 03:41:49] 2025-06-04 01:41:32,600 | INFO     | [job] job monitor thread has finished
[2025-06-04 03:41:49] 2025-06-04 01:41:32,674 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 03:41:49] 2025-06-04 01:41:32,678 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 03:41:49] 2025-06-04 01:41:32,875 | INFO     | [data] control thread has finished
[2025-06-04 03:41:49] 2025-06-04 01:41:33,147 | INFO     | [payload] failed_post thread has finished
[2025-06-04 03:41:49] 2025-06-04 01:41:33,177 | INFO     | all job control threads have been joined
[2025-06-04 03:41:49] 2025-06-04 01:41:33,332 | INFO     | [data] copytool_in thread has finished
[2025-06-04 03:41:49] 2025-06-04 01:41:33,558 | INFO     | [payload] validate_post thread has finished
[2025-06-04 03:41:49] 2025-06-04 01:41:33,578 | INFO     | [payload] control thread has finished
[2025-06-04 03:41:49] 2025-06-04 01:41:33,734 | INFO     | [data] copytool_out thread has finished
[2025-06-04 03:41:49] 2025-06-04 01:41:34,006 | INFO     | [job] validate thread has finished
[2025-06-04 03:41:49] 2025-06-04 01:41:34,102 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 03:41:49] 2025-06-04 01:41:34,178 | INFO     | [job] control thread has finished
[2025-06-04 03:41:49] 2025-06-04 01:41:34,267 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 03:41:49] 2025-06-04 01:41:34,540 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 03:41:49] 2025-06-04 01:41:35,546 | INFO     | [job] queue monitor thread has finished
[2025-06-04 03:41:49] 2025-06-04 01:41:38,274 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 03:41:49] 2025-06-04 01:41:42,163 | INFO     | job.realtimelogging is not enabled
[2025-06-04 03:41:49] 2025-06-04 01:41:43,169 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 03:41:49] 2025-06-04 01:41:44,583 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140575375185728)>', '<ExcThread(monitor, started 140574724179712)>']
[2025-06-04 03:41:49] 2025-06-04 01:41:44,664 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 03:41:49] 2025-06-04 01:41:44,664 | INFO     | [monitor] control thread has ended
[2025-06-04 03:41:49] 2025-06-04 01:41:49,609 | INFO     | all workflow threads have been joined
[2025-06-04 03:41:49] 2025-06-04 01:41:49,609 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 03:41:49] 2025-06-04 01:41:49,610 | INFO     | traces error code: 0
[2025-06-04 03:41:49] 2025-06-04 01:41:49,610 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 03:41:49] 2025-06-04 01:41:49,689 [wrapper] ==== pilot stdout END ====
[2025-06-04 03:41:49] 2025-06-04 01:41:49,694 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 03:41:49] 2025-06-04 01:41:49,698 [wrapper] pilotpid: 3395830
[2025-06-04 03:41:49] 2025-06-04 01:41:49,702 [wrapper] Pilot exit status: 0
[2025-06-04 03:41:49] 2025-06-04 01:41:49,714 [wrapper] pandaids: 6677576552
[2025-06-04 03:41:49] 2025-06-04 01:41:49,737 [wrapper] cleanup supervisor_pilot 3412163 3395831
[2025-06-04 03:41:49] 2025-06-04 01:41:49,742 [wrapper] Test setup, not cleaning
[2025-06-04 03:41:49] 2025-06-04 01:41:49,746 [wrapper] apfmon messages muted
[2025-06-04 03:41:49] 2025-06-04 01:41:49,750 [wrapper] ==== wrapper stdout END ====
[2025-06-04 03:41:49] 2025-06-04 01:41:49,754 [wrapper] ==== wrapper stderr END ====
[2025-06-04 03:41:49]  *** Error codes and diagnostics ***
[2025-06-04 03:41:49]     "exeErrorCode": 0,
[2025-06-04 03:41:49]     "exeErrorDiag": "",
[2025-06-04 03:41:49]     "pilotErrorCode": 0,
[2025-06-04 03:41:49]     "pilotErrorDiag": "",
[2025-06-04 03:41:49]  *** Listing of results directory ***
[2025-06-04 03:41:49] total 395136
[2025-06-04 03:41:49] -rw-r--r-- 1 boinc boinc    495897 Jun  3 12:21 pilot3.tar.gz
[2025-06-04 03:41:49] -rwx------ 1 boinc boinc     37140 Jun  3 12:26 runpilot2-wrapper.sh
[2025-06-04 03:41:49] -rw-r--r-- 1 boinc boinc      5111 Jun  3 12:26 queuedata.json
[2025-06-04 03:41:49] -rw-r--r-- 1 boinc boinc       100 Jun  4 02:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 03:41:49] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 02:36 run_atlas
[2025-06-04 03:41:49] -rw-r--r-- 1 boinc boinc       105 Jun  4 02:36 job.xml
[2025-06-04 03:41:49] -rw-r--r-- 2 boinc boinc 215987873 Jun  4 02:36 EVNT.45006593._001154.pool.root.1
[2025-06-04 03:41:49] -rw-r--r-- 1 boinc boinc      6863 Jun  4 02:36 init_data.xml
[2025-06-04 03:41:49] drwxrwx--x 2 boinc boinc      4096 Jun  4 02:36 shared
[2025-06-04 03:41:49] -rw-r--r-- 2 boinc boinc    508873 Jun  4 02:36 input.tar.gz
[2025-06-04 03:41:49] -rw-r--r-- 2 boinc boinc     15093 Jun  4 02:36 start_atlas.sh
[2025-06-04 03:41:49] -rw-r--r-- 1 boinc boinc         0 Jun  4 02:36 boinc_lockfile
[2025-06-04 03:41:49] -rw-r--r-- 1 boinc boinc      2525 Jun  4 02:36 pandaJob.out
[2025-06-04 03:41:49] -rw------- 1 boinc boinc    986069 Jun  4 02:36 agis_schedconf.cvmfs.json
[2025-06-04 03:41:49] -rw------- 1 boinc boinc   1603667 Jun  4 02:36 agis_ddmendpoints.agis.ALL.json
[2025-06-04 03:41:49] drwx------ 4 boinc boinc      4096 Jun  4 02:36 pilot3
[2025-06-04 03:41:49] -rw------- 1 boinc boinc        95 Jun  4 03:40 pilot_heartbeat.json
[2025-06-04 03:41:49] -rw------- 1 boinc boinc 183564779 Jun  4 03:41 HITS.45006595._028853.pool.root.1
[2025-06-04 03:41:49] -rw-r--r-- 1 boinc boinc       529 Jun  4 03:41 boinc_task_state.xml
[2025-06-04 03:41:49] -rw------- 1 boinc boinc      1024 Jun  4 03:41 memory_monitor_summary.json
[2025-06-04 03:41:49] -rw------- 1 boinc boinc    225176 Jun  4 03:41 log.45006595._028853.job.log.tgz.1
[2025-06-04 03:41:49] -rw------- 1 boinc boinc      7666 Jun  4 03:41 heartbeat.json
[2025-06-04 03:41:49] -rw-r--r-- 1 boinc boinc        27 Jun  4 03:41 wrapper_checkpoint.txt
[2025-06-04 03:41:49] -rw-r--r-- 1 boinc boinc      8192 Jun  4 03:41 boinc_mmap_file
[2025-06-04 03:41:49] -rw------- 1 boinc boinc      4552 Jun  4 03:41 pilotlog.txt
[2025-06-04 03:41:49] -rw------- 1 boinc boinc    391041 Jun  4 03:41 log.45006595._028853.job.log.1
[2025-06-04 03:41:49] -rw------- 1 boinc boinc       357 Jun  4 03:41 output.list
[2025-06-04 03:41:49] -rw-r--r-- 1 boinc boinc       620 Jun  4 03:41 runtime_log
[2025-06-04 03:41:49] -rw------- 1 boinc boinc    634880 Jun  4 03:41 result.tar.gz
[2025-06-04 03:41:49] -rw-r--r-- 1 boinc boinc      8753 Jun  4 03:41 runtime_log.err
[2025-06-04 03:41:49] -rw------- 1 boinc boinc       662 Jun  4 03:41 LeiLDm91dg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmbTjKDmWSMrKn.diag
[2025-06-04 03:41:49] -rw-r--r-- 1 boinc boinc     21200 Jun  4 03:41 stderr.txt
[2025-06-04 03:41:49] HITS file was successfully produced:
[2025-06-04 03:41:49] -rw------- 1 boinc boinc 183564779 Jun  4 03:41 shared/HITS.pool.root.1
[2025-06-04 03:41:49]  *** Contents of shared directory: ***
[2025-06-04 03:41:49] total 391336
[2025-06-04 03:41:49] -rw-r--r-- 2 boinc boinc 215987873 Jun  4 02:36 ATLAS.root_0
[2025-06-04 03:41:49] -rw-r--r-- 2 boinc boinc    508873 Jun  4 02:36 input.tar.gz
[2025-06-04 03:41:49] -rw-r--r-- 2 boinc boinc     15093 Jun  4 02:36 start_atlas.sh
[2025-06-04 03:41:49] -rw------- 1 boinc boinc 183564779 Jun  4 03:41 HITS.pool.root.1
[2025-06-04 03:41:49] -rw------- 1 boinc boinc    634880 Jun  4 03:41 result.tar.gz
03:41:51 (3392125): run_atlas exited; CPU time 14428.299573
03:41:51 (3392125): called boinc_finish(0)

</stderr_txt>
]]>

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