Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:41:50 (645700): wrapper (7.7.26015): starting
12:41:50 (645700): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 12:41:50] Arguments: --nthreads 8
[2025-06-03 12:41:50] Threads: 8
[2025-06-03 12:41:50] Checking for CVMFS
[2025-06-03 12:41:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 12:41:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 12:41:50] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 12:41:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 12:41:50] 2.12.6.0 3733875 171336 394372 146749 3 61 23589660 32935936 3664 130560 1 380709620 99.638 384266221 25463 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 12:41:50] CVMFS is ok
[2025-06-03 12:41:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 12:41:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 12:41:50] Further information can be found at the LHC@home message board.
[2025-06-03 12:41:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 12:41:50] Checking for apptainer binary...
[2025-06-03 12:41:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 12:41:50] Running /usr/bin/apptainer --version
[2025-06-03 12:41:50] apptainer version 1.4.1-1.el9
[2025-06-03 12:41:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 12:41:50] c-6-2.aglt2.org
[2025-06-03 12:41:50] apptainer works
[2025-06-03 12:41:51] Set ATHENA_PROC_NUMBER=8
[2025-06-03 12:41:51] Set ATHENA_CORE_NUMBER=8
[2025-06-03 12:41:51] Starting ATLAS job with PandaID=6677677423
[2025-06-03 12:41:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 14:13:40]  *** The last 200 lines of the pilot log: ***
[2025-06-03 14:13:40]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 14:13:40]  replicas=None
[2025-06-03 14:13:40]  scope=mc23_13p6TeV
[2025-06-03 14:13:40]  status=None
[2025-06-03 14:13:40]  status_code=0
[2025-06-03 14:13:40]  storage_token=
[2025-06-03 14:13:40]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6677677423/log.45006595._037233.job.log.tgz.1
[2025-06-03 14:13:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e4/32/log.45006595._037233.job.log.tgz.1
[2025-06-03 14:13:40]  workdir=None
[2025-06-03 14:13:40] ]
[2025-06-03 14:13:40] 2025-06-03 18:13:08,328 | INFO     | transferring file log.45006595._037233.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6677677423/log.45006595._037233.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 14:13:40] 2025-06-03 18:13:08,328 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6677677423/log.45006595._037233.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._037233.job
[2025-06-03 14:13:40] 2025-06-03 18:13:08,397 | INFO     | adding to output.list: log.45006595._037233.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e4/32/log.45006595._037233.job.log.tg
[2025-06-03 14:13:40] 2025-06-03 18:13:08,398 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 14:13:40] 2025-06-03 18:13:08,398 | INFO     | summary of transferred files:
[2025-06-03 14:13:40] 2025-06-03 18:13:08,398 | INFO     |  -- lfn=log.45006595._037233.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 14:13:40] 2025-06-03 18:13:08,398 | INFO     | stage-out finished correctly
[2025-06-03 14:13:40] 2025-06-03 18:13:09,599 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 14:13:40] 2025-06-03 18:13:10,980 | INFO     | job 6677677423 has state=finished
[2025-06-03 14:13:40] 2025-06-03 18:13:10,980 | INFO     | preparing for final server update for job 6677677423 in state='finished'
[2025-06-03 14:13:40] 2025-06-03 18:13:10,980 | INFO     | this job has now completed (state=finished)
[2025-06-03 14:13:40] 2025-06-03 18:13:10,981 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 14:13:40] 2025-06-03 18:13:10,981 | INFO     | log transfer has been attempted: DONE
[2025-06-03 14:13:40] 2025-06-03 18:13:10,981 | INFO     | job 6677677423 has finished - writing final server update
[2025-06-03 14:13:40] 2025-06-03 18:13:10,981 | INFO     | total number of processed events: 400 (read)
[2025-06-03 14:13:40] 2025-06-03 18:13:10,983 | INFO     | executing command: lscpu
[2025-06-03 14:13:40] 2025-06-03 18:13:11,032 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 14:13:40] 2025-06-03 18:13:12,939 | WARNING  | process 656231 can no longer be monitored (due to stat problems) - aborting
[2025-06-03 14:13:40] 2025-06-03 18:13:12,939 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677677423/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 14:13:40] 2025-06-03 18:13:13,265 | INFO     | number of running child processes to parent process 656231: 1
[2025-06-03 14:13:40] 2025-06-03 18:13:13,265 | INFO     | maximum number of monitored processes: 6
[2025-06-03 14:13:40] 2025-06-03 18:13:15,778 | INFO     | monitor loop #404: job 0:6677677423 is in state 'finished'
[2025-06-03 14:13:40] 2025-06-03 18:13:15,778 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 14:13:40] 2025-06-03 18:13:18,282 | INFO     | monitor loop #405: job 0:6677677423 is in state 'finished'
[2025-06-03 14:13:40] 2025-06-03 18:13:18,282 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 14:13:40] 2025-06-03 18:13:20,787 | INFO     | monitor loop #406: job 0:6677677423 is in state 'finished'
[2025-06-03 14:13:40] 2025-06-03 18:13:20,789 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 14:13:40] 2025-06-03 18:13:21,254 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 14:13:40] 2025-06-03 18:13:21,254 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677677423/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 14:13:40] 2025-06-03 18:13:21,255 | INFO     | extracted standard info from prmon json
[2025-06-03 14:13:40] 2025-06-03 18:13:21,255 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 14:13:40] 2025-06-03 18:13:21,256 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 14:13:40] 2025-06-03 18:13:21,256 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 14:13:40] 2025-06-03 18:13:21,256 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 14:13:40] 2025-06-03 18:13:21,263 | INFO     | fitting pss+swap vs Time
[2025-06-03 14:13:40] 2025-06-03 18:13:21,264 | INFO     | sum of square deviations: 177275882.0
[2025-06-03 14:13:40] 2025-06-03 18:13:21,264 | INFO     | sum of deviations: 20901161.999999106
[2025-06-03 14:13:40] 2025-06-03 18:13:21,264 | INFO     | mean x: 1748971753.0
[2025-06-03 14:13:40] 2025-06-03 18:13:21,264 | INFO     | mean y: 2179243.1445783135
[2025-06-03 14:13:40] 2025-06-03 18:13:21,264 | INFO     | -- intersect: -204027836.63672787
[2025-06-03 14:13:40] 2025-06-03 18:13:21,265 | INFO     | intersect: -204027836.63672787
[2025-06-03 14:13:40] 2025-06-03 18:13:21,265 | INFO     | chi2: 0.9619476460634173
[2025-06-03 14:13:40] 2025-06-03 18:13:21,265 | INFO     | -- intersect: -204027836.63672787
[2025-06-03 14:13:40] 2025-06-03 18:13:21,265 | INFO     | current memory leak: 0.12 B/s (using 83 data points, chi2=0.96)
[2025-06-03 14:13:40] 2025-06-03 18:13:21,266 | INFO     | ..............................
[2025-06-03 14:13:40] 2025-06-03 18:13:21,266 | INFO     | . Timing measurements:
[2025-06-03 14:13:40] 2025-06-03 18:13:21,266 | INFO     | . get job = 0 s
[2025-06-03 14:13:40] 2025-06-03 18:13:21,266 | INFO     | . initial setup = 3 s
[2025-06-03 14:13:40] 2025-06-03 18:13:21,266 | INFO     | . payload setup = 6 s
[2025-06-03 14:13:40] 2025-06-03 18:13:21,266 | INFO     | . stage-in = 0 s
[2025-06-03 14:13:40] 2025-06-03 18:13:21,267 | INFO     | . payload execution = 5440 s
[2025-06-03 14:13:40] 2025-06-03 18:13:21,267 | INFO     | . stage-out = 1 s
[2025-06-03 14:13:40] 2025-06-03 18:13:21,267 | INFO     | . log creation = 0 s
[2025-06-03 14:13:40] 2025-06-03 18:13:21,267 | INFO     | ..............................
[2025-06-03 14:13:40] 2025-06-03 18:13:21,401 | INFO     | 
[2025-06-03 14:13:40] 2025-06-03 18:13:21,401 | INFO     | job summary report
[2025-06-03 14:13:40] 2025-06-03 18:13:21,401 | INFO     | --------------------------------------------------
[2025-06-03 14:13:40] 2025-06-03 18:13:21,402 | INFO     | PanDA job id: 6677677423
[2025-06-03 14:13:40] 2025-06-03 18:13:21,402 | INFO     | task id: 45006595
[2025-06-03 14:13:40] 2025-06-03 18:13:21,402 | INFO     | errors: (none)
[2025-06-03 14:13:40] 2025-06-03 18:13:21,402 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 14:13:40] 2025-06-03 18:13:21,402 | INFO     | pilot state: finished 
[2025-06-03 14:13:40] 2025-06-03 18:13:21,402 | INFO     | transexitcode: 0
[2025-06-03 14:13:40] 2025-06-03 18:13:21,402 | INFO     | exeerrorcode: 0
[2025-06-03 14:13:40] 2025-06-03 18:13:21,402 | INFO     | exeerrordiag: 
[2025-06-03 14:13:40] 2025-06-03 18:13:21,403 | INFO     | exitcode: 0
[2025-06-03 14:13:40] 2025-06-03 18:13:21,403 | INFO     | exitmsg: OK
[2025-06-03 14:13:40] 2025-06-03 18:13:21,403 | INFO     | cpuconsumptiontime: 36470 s
[2025-06-03 14:13:40] 2025-06-03 18:13:21,403 | INFO     | nevents: 400
[2025-06-03 14:13:40] 2025-06-03 18:13:21,403 | INFO     | neventsw: 0
[2025-06-03 14:13:40] 2025-06-03 18:13:21,403 | INFO     | pid: 656231
[2025-06-03 14:13:40] 2025-06-03 18:13:21,403 | INFO     | pgrp: 656231
[2025-06-03 14:13:40] 2025-06-03 18:13:21,403 | INFO     | corecount: 8
[2025-06-03 14:13:40] 2025-06-03 18:13:21,403 | INFO     | event service: False
[2025-06-03 14:13:40] 2025-06-03 18:13:21,403 | INFO     | sizes: {0: 2404957, 1: 2405212, 5: 2405418, 12: 2405474, 5450: 2431933, 5452: 2440874, 5454: 2441058, 5465: 2441228}
[2025-06-03 14:13:40] 2025-06-03 18:13:21,404 | INFO     | --------------------------------------------------
[2025-06-03 14:13:40] 2025-06-03 18:13:21,404 | INFO     | 
[2025-06-03 14:13:40] 2025-06-03 18:13:21,404 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-03 14:13:40] 2025-06-03 18:13:21,434 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 14:13:40] 2025-06-03 18:13:21,435 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 14:13:40] 2025-06-03 18:13:21,435 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 14:13:40] 2025-06-03 18:13:21,435 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 14:13:40] 2025-06-03 18:13:21,435 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 14:13:40] 2025-06-03 18:13:21,435 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 14:13:40] 2025-06-03 18:13:21,435 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 14:13:40] 2025-06-03 18:13:21,436 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 14:13:40] 2025-06-03 18:13:21,436 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 14:13:40] 2025-06-03 18:13:21,436 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 14:13:40] 2025-06-03 18:13:21,436 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 14:13:40] 2025-06-03 18:13:21,436 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 14:13:40] 2025-06-03 18:13:21,436 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 14:13:40] 2025-06-03 18:13:21,436 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 14:13:40] 2025-06-03 18:13:21,436 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 14:13:40] 2025-06-03 18:13:21,437 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 14:13:40] 2025-06-03 18:13:21,438 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 14:13:40] 2025-06-03 18:13:21,438 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 14:13:40] 2025-06-03 18:13:21,438 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 14:13:40] 2025-06-03 18:13:21,438 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 14:13:40] 2025-06-03 18:13:21,438 | INFO     | job 6677677423 has completed (purged errors)
[2025-06-03 14:13:40] 2025-06-03 18:13:21,439 | INFO     | overall cleanup function is called
[2025-06-03 14:13:40] 2025-06-03 18:13:22,449 | INFO     | --- collectZombieJob: --- 10, [656231]
[2025-06-03 14:13:40] 2025-06-03 18:13:22,450 | INFO     | zombie collector waiting for pid 656231
[2025-06-03 14:13:40] 2025-06-03 18:13:22,450 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 14:13:40] 2025-06-03 18:13:22,450 | INFO     | collected zombie processes
[2025-06-03 14:13:40] 2025-06-03 18:13:22,450 | INFO     | will attempt to kill all subprocesses of pid=656231
[2025-06-03 14:13:40] 2025-06-03 18:13:22,813 | INFO     | process IDs to be killed: [656231] (in reverse order)
[2025-06-03 14:13:40] 2025-06-03 18:13:22,939 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 14:13:40] 2025-06-03 18:13:22,939 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 14:13:40] 2025-06-03 18:13:22,956 | INFO     | did not find any defunct processes belonging to 656231
[2025-06-03 14:13:40] 2025-06-03 18:13:22,984 | INFO     | did not find any defunct processes belonging to 656231
[2025-06-03 14:13:40] 2025-06-03 18:13:22,984 | INFO     | ready for new job
[2025-06-03 14:13:40] 2025-06-03 18:13:22,985 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 14:13:40] 2025-06-03 18:13:22,986 | INFO     | **************************************
[2025-06-03 14:13:40] 2025-06-03 18:13:22,986 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 14:13:40] 2025-06-03 18:13:22,987 | INFO     | **************************************
[2025-06-03 14:13:40] 2025-06-03 18:13:22,987 | INFO     | 
[2025-06-03 14:13:40] 2025-06-03 18:13:22,990 | INFO     | architecture information:
[2025-06-03 14:13:40] 2025-06-03 18:13:22,994 | INFO     | executing command: cat /etc/os-release
[2025-06-03 14:13:40] 2025-06-03 18:13:23,019 | INFO     | cat /etc/os-release:
[2025-06-03 14:13:40] NAME="CentOS Linux"
[2025-06-03 14:13:40] VERSION="7 (Core)"
[2025-06-03 14:13:40] ID="centos"
[2025-06-03 14:13:40] ID_LIKE="rhel fedora"
[2025-06-03 14:13:40] VERSION_ID="7"
[2025-06-03 14:13:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 14:13:40] ANSI_COLOR="0;31"
[2025-06-03 14:13:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 14:13:40] HOME_URL="https://www.centos.org/"
[2025-06-03 14:13:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 14:13:40] 
[2025-06-03 14:13:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 14:13:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 14:13:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 14:13:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 14:13:40] 
[2025-06-03 14:13:40] 2025-06-03 18:13:23,019 | INFO     | **************************************
[2025-06-03 14:13:40] 2025-06-03 18:13:23,358 | INFO     | PID=649317 has CPU usage=13.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-03 14:13:40] 2025-06-03 18:13:23,358 | INFO     | .. there are 18 such processes running
[2025-06-03 14:13:40] 2025-06-03 18:13:23,523 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-03 14:13:40] 2025-06-03 18:13:23,553 | INFO     | sufficient remaining disk space (74476158976 B)
[2025-06-03 14:13:40] 2025-06-03 18:13:23,553 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 14:13:40] 2025-06-03 18:13:23,553 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 14:13:40] 2025-06-03 18:13:23,554 | INFO     | update_server=False
[2025-06-03 14:13:40] 2025-06-03 18:13:23,554 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 14:13:40] 2025-06-03 18:13:23,554 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 14:13:40] 2025-06-03 18:13:23,554 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 14:13:40] 2025-06-03 18:13:23,554 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 14:13:40] 2025-06-03 18:13:23,555 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 14:13:40] 2025-06-03 18:13:23,593 | INFO     | all payload control threads have been joined
[2025-06-03 14:13:40] 2025-06-03 18:13:24,037 | INFO     | all data control threads have been joined
[2025-06-03 14:13:40] 2025-06-03 18:13:24,108 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 14:13:40] 2025-06-03 18:13:24,301 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 14:13:40] 2025-06-03 18:13:24,301 | INFO     | aborting loop
[2025-06-03 14:13:40] 2025-06-03 18:13:24,559 | INFO     | [job] retrieve thread has finished
[2025-06-03 14:13:40] 2025-06-03 18:13:24,599 | INFO     | [payload] control thread has finished
[2025-06-03 14:13:40] 2025-06-03 18:13:24,797 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 14:13:40] 2025-06-03 18:13:24,860 | INFO     | all job control threads have been joined
[2025-06-03 14:13:40] 2025-06-03 18:13:25,025 | INFO     | [data] copytool_in thread has finished
[2025-06-03 14:13:40] 2025-06-03 18:13:25,046 | INFO     | [data] control thread has finished
[2025-06-03 14:13:40] 2025-06-03 18:13:25,306 | INFO     | [job] job monitor thread has finished
[2025-06-03 14:13:40] 2025-06-03 18:13:25,416 | INFO     | [payload] validate_post thread has finished
[2025-06-03 14:13:40] 2025-06-03 18:13:25,458 | INFO     | [job] validate thread has finished
[2025-06-03 14:13:40] 2025-06-03 18:13:25,622 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 14:13:40] 2025-06-03 18:13:25,627 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 14:13:40] 2025-06-03 18:13:25,766 | INFO     | [payload] failed_post thread has finished
[2025-06-03 14:13:40] 2025-06-03 18:13:25,786 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 14:13:40] 2025-06-03 18:13:25,866 | INFO     | [job] control thread has finished
[2025-06-03 14:13:40] 2025-06-03 18:13:26,115 | INFO     | [data] copytool_out thread has finished
[2025-06-03 14:13:40] 2025-06-03 18:13:26,413 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 14:13:40] 2025-06-03 18:13:27,419 | INFO     | [job] queue monitor thread has finished
[2025-06-03 14:13:40] 2025-06-03 18:13:28,811 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 14:13:40] 2025-06-03 18:13:33,609 | INFO     | job.realtimelogging is not enabled
[2025-06-03 14:13:40] 2025-06-03 18:13:34,614 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 14:13:40] 2025-06-03 18:13:35,526 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140293528459072)>', '<ExcThread(monitor, started 140293177317120)>']
[2025-06-03 14:13:40] 2025-06-03 18:13:35,622 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 14:13:40] 2025-06-03 18:13:35,623 | INFO     | [monitor] control thread has ended
[2025-06-03 14:13:40] 2025-06-03 18:13:40,551 | INFO     | all workflow threads have been joined
[2025-06-03 14:13:40] 2025-06-03 18:13:40,551 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 14:13:40] 2025-06-03 18:13:40,552 | INFO     | traces error code: 0
[2025-06-03 14:13:40] 2025-06-03 18:13:40,552 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 14:13:40] 2025-06-03 18:13:40,694 [wrapper] ==== pilot stdout END ====
[2025-06-03 14:13:40] 2025-06-03 18:13:40,698 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 14:13:40] 2025-06-03 18:13:40,702 [wrapper] pilotpid: 649317
[2025-06-03 14:13:40] 2025-06-03 18:13:40,713 [wrapper] Pilot exit status: 0
[2025-06-03 14:13:40] 2025-06-03 18:13:40,729 [wrapper] pandaids: 6677677423
[2025-06-03 14:13:40] 2025-06-03 18:13:40,797 [wrapper] cleanup supervisor_pilot 1013361 649318
[2025-06-03 14:13:40] 2025-06-03 18:13:40,801 [wrapper] Test setup, not cleaning
[2025-06-03 14:13:40] 2025-06-03 18:13:40,804 [wrapper] apfmon messages muted
[2025-06-03 14:13:40] 2025-06-03 18:13:40,807 [wrapper] ==== wrapper stdout END ====
[2025-06-03 14:13:40] 2025-06-03 18:13:40,810 [wrapper] ==== wrapper stderr END ====
[2025-06-03 14:13:40]  *** Error codes and diagnostics ***
[2025-06-03 14:13:40]     "exeErrorCode": 0,
[2025-06-03 14:13:40]     "exeErrorDiag": "",
[2025-06-03 14:13:40]     "pilotErrorCode": 0,
[2025-06-03 14:13:40]     "pilotErrorDiag": "",
[2025-06-03 14:13:40]  *** Listing of results directory ***
[2025-06-03 14:13:40] total 387096
[2025-06-03 14:13:40] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 11:35 pilot3.tar.gz
[2025-06-03 14:13:40] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 11:41 queuedata.json
[2025-06-03 14:13:40] -rwx------. 1 boincer umatlas     37140 Jun  3 11:41 runpilot2-wrapper.sh
[2025-06-03 14:13:40] -rw-r--r--. 1 boincer umatlas       100 Jun  3 12:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 14:13:40] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 12:41 run_atlas
[2025-06-03 14:13:40] -rw-r--r--. 1 boincer umatlas       105 Jun  3 12:41 job.xml
[2025-06-03 14:13:40] -rw-r--r--. 2 boincer umatlas 214836060 Jun  3 12:41 EVNT.45006593._001496.pool.root.1
[2025-06-03 14:13:40] -rw-r--r--. 2 boincer umatlas    508878 Jun  3 12:41 input.tar.gz
[2025-06-03 14:13:40] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 12:41 start_atlas.sh
[2025-06-03 14:13:40] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 12:41 shared
[2025-06-03 14:13:40] -rw-r--r--. 1 boincer umatlas         0 Jun  3 12:41 boinc_lockfile
[2025-06-03 14:13:40] -rw-r--r--. 1 boincer umatlas      2525 Jun  3 12:41 pandaJob.out
[2025-06-03 14:13:40] -rw-------. 1 boincer umatlas    983734 Jun  3 12:41 agis_schedconf.cvmfs.json
[2025-06-03 14:13:40] -rw-------. 1 boincer umatlas   1603667 Jun  3 12:42 agis_ddmendpoints.agis.ALL.json
[2025-06-03 14:13:40] drwx------. 4 boincer umatlas      4096 Jun  3 12:42 pilot3
[2025-06-03 14:13:40] -rw-r--r--. 1 boincer umatlas      6657 Jun  3 14:03 init_data.xml
[2025-06-03 14:13:40] -rw-r--r--. 1 boincer umatlas       529 Jun  3 14:12 boinc_task_state.xml
[2025-06-03 14:13:40] -rw-------. 1 boincer umatlas 176033825 Jun  3 14:12 HITS.45006595._037233.pool.root.1
[2025-06-03 14:13:40] -rw-------. 1 boincer umatlas        95 Jun  3 14:12 pilot_heartbeat.json
[2025-06-03 14:13:40] -rw-------. 1 boincer umatlas      1032 Jun  3 14:13 memory_monitor_summary.json
[2025-06-03 14:13:40] -rw-------. 1 boincer umatlas    306072 Jun  3 14:13 log.45006595._037233.job.log.tgz.1
[2025-06-03 14:13:40] -rw-------. 1 boincer umatlas      7703 Jun  3 14:13 heartbeat.json
[2025-06-03 14:13:40] -rw-r--r--. 1 boincer umatlas        27 Jun  3 14:13 wrapper_checkpoint.txt
[2025-06-03 14:13:40] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 14:13 boinc_mmap_file
[2025-06-03 14:13:40] -rw-------. 1 boincer umatlas      4943 Jun  3 14:13 pilotlog.txt
[2025-06-03 14:13:40] -rw-------. 1 boincer umatlas    530140 Jun  3 14:13 log.45006595._037233.job.log.1
[2025-06-03 14:13:40] -rw-------. 1 boincer umatlas       357 Jun  3 14:13 output.list
[2025-06-03 14:13:40] -rw-r--r--. 1 boincer umatlas       620 Jun  3 14:13 runtime_log
[2025-06-03 14:13:40] -rw-------. 1 boincer umatlas    860160 Jun  3 14:13 result.tar.gz
[2025-06-03 14:13:40] -rw-r--r--. 1 boincer umatlas      8644 Jun  3 14:13 runtime_log.err
[2025-06-03 14:13:40] -rw-------. 1 boincer umatlas       648 Jun  3 14:13 OUiMDmWwig7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm5rkKDmmEvtgm.diag
[2025-06-03 14:13:40] -rw-r--r--. 1 boincer umatlas     21918 Jun  3 14:13 stderr.txt
[2025-06-03 14:13:40] HITS file was successfully produced:
[2025-06-03 14:13:40] -rw-------. 1 boincer umatlas 176033825 Jun  3 14:12 shared/HITS.pool.root.1
[2025-06-03 14:13:40]  *** Contents of shared directory: ***
[2025-06-03 14:13:40] total 383080
[2025-06-03 14:13:40] -rw-r--r--. 2 boincer umatlas 214836060 Jun  3 12:41 ATLAS.root_0
[2025-06-03 14:13:40] -rw-r--r--. 2 boincer umatlas    508878 Jun  3 12:41 input.tar.gz
[2025-06-03 14:13:40] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 12:41 start_atlas.sh
[2025-06-03 14:13:40] -rw-------. 1 boincer umatlas 176033825 Jun  3 14:12 HITS.pool.root.1
[2025-06-03 14:13:40] -rw-------. 1 boincer umatlas    860160 Jun  3 14:13 result.tar.gz
14:13:42 (645700): run_atlas exited; CPU time 36601.790902
14:13:42 (645700): called boinc_finish(0)

</stderr_txt>
]]>

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