Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:32:30 (463159): wrapper (7.7.26015): starting
11:32:30 (463159): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 11:32:30] Arguments: --nthreads 8
[2025-06-03 11:32:30] Threads: 8
[2025-06-03 11:32:30] Checking for CVMFS
[2025-06-03 11:32:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 11:32:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 11:32:31] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 11:32:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 11:32:31] 2.12.6.0 3733875 171267 395432 146748 0 186 23511162 32935937 3342 130560 1 380482992 99.638 384264920 25463 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 11:32:31] CVMFS is ok
[2025-06-03 11:32:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 11:32:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 11:32:31] Further information can be found at the LHC@home message board.
[2025-06-03 11:32:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 11:32:31] Checking for apptainer binary...
[2025-06-03 11:32:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 11:32:31] Running /usr/bin/apptainer --version
[2025-06-03 11:32:31] apptainer version 1.4.1-1.el9
[2025-06-03 11:32:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 11:32:31] c-6-2.aglt2.org
[2025-06-03 11:32:31] apptainer works
[2025-06-03 11:32:31] Set ATHENA_PROC_NUMBER=8
[2025-06-03 11:32:31] Set ATHENA_CORE_NUMBER=8
[2025-06-03 11:32:31] Starting ATLAS job with PandaID=6677580540
[2025-06-03 11:32:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 13:08:28]  *** The last 200 lines of the pilot log: ***
[2025-06-03 13:08:28]  status_code=0
[2025-06-03 13:08:28]  storage_token=
[2025-06-03 13:08:28]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6677580540/log.45006595._030350.job.log.tgz.1
[2025-06-03 13:08:28]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/40/03/log.45006595._030350.job.log.tgz.1
[2025-06-03 13:08:28]  workdir=None
[2025-06-03 13:08:28] ]
[2025-06-03 13:08:28] 2025-06-03 17:08:04,845 | INFO     | transferring file log.45006595._030350.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6677580540/log.45006595._030350.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 13:08:28] 2025-06-03 17:08:04,846 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6677580540/log.45006595._030350.job.log.tgz.1 /tmp/boinchome/slots/3/log.45006595._030350.job
[2025-06-03 13:08:28] 2025-06-03 17:08:04,861 | INFO     | adding to output.list: log.45006595._030350.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/40/03/log.45006595._030350.job.log.tg
[2025-06-03 13:08:28] 2025-06-03 17:08:04,862 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 13:08:28] 2025-06-03 17:08:04,863 | INFO     | summary of transferred files:
[2025-06-03 13:08:28] 2025-06-03 17:08:04,863 | INFO     |  -- lfn=log.45006595._030350.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 13:08:28] 2025-06-03 17:08:04,863 | INFO     | stage-out finished correctly
[2025-06-03 13:08:28] 2025-06-03 17:08:05,024 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 13:08:28] 2025-06-03 17:08:06,227 | INFO     | job 6677580540 has state=finished
[2025-06-03 13:08:28] 2025-06-03 17:08:06,227 | INFO     | preparing for final server update for job 6677580540 in state='finished'
[2025-06-03 13:08:28] 2025-06-03 17:08:06,228 | INFO     | this job has now completed (state=finished)
[2025-06-03 13:08:28] 2025-06-03 17:08:06,228 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 13:08:28] 2025-06-03 17:08:06,228 | INFO     | log transfer has been attempted: DONE
[2025-06-03 13:08:28] 2025-06-03 17:08:06,228 | INFO     | job 6677580540 has finished - writing final server update
[2025-06-03 13:08:28] 2025-06-03 17:08:06,229 | INFO     | total number of processed events: 400 (read)
[2025-06-03 13:08:28] 2025-06-03 17:08:06,243 | INFO     | executing command: lscpu
[2025-06-03 13:08:28] 2025-06-03 17:08:06,297 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 13:08:28] 2025-06-03 17:08:06,462 | INFO     | PID=466809 has CPU usage=9.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-06-03 13:08:28] 2025-06-03 17:08:06,462 | INFO     | .. there are 5 such processes running
[2025-06-03 13:08:28] 2025-06-03 17:08:08,379 | WARNING  | process 473310 can no longer be monitored (due to stat problems) - aborting
[2025-06-03 13:08:28] 2025-06-03 17:08:08,380 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6677580540/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 13:08:28] 2025-06-03 17:08:08,381 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6677580540/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 13:08:28] 2025-06-03 17:08:08,382 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3779577 B
[2025-06-03 13:08:28] 2025-06-03 17:08:08,382 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16028 B
[2025-06-03 13:08:28] 2025-06-03 17:08:08,383 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-06-03 13:08:28] 2025-06-03 17:08:09,689 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 13:08:28] 2025-06-03 17:08:09,689 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6677580540/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 13:08:28] 2025-06-03 17:08:09,695 | INFO     | extracted standard info from prmon json
[2025-06-03 13:08:28] 2025-06-03 17:08:09,695 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 13:08:28] 2025-06-03 17:08:09,695 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 13:08:28] 2025-06-03 17:08:09,696 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 13:08:28] 2025-06-03 17:08:09,696 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 13:08:28] 2025-06-03 17:08:09,699 | INFO     | fitting pss+swap vs Time
[2025-06-03 13:08:28] 2025-06-03 17:08:09,699 | INFO     | sum of square deviations: 204163828.0
[2025-06-03 13:08:28] 2025-06-03 17:08:09,700 | INFO     | sum of deviations: 7650556438.000001
[2025-06-03 13:08:28] 2025-06-03 17:08:09,700 | INFO     | mean x: 1748967712.0
[2025-06-03 13:08:28] 2025-06-03 17:08:09,700 | INFO     | mean y: 2147369.195402299
[2025-06-03 13:08:28] 2025-06-03 17:08:09,700 | INFO     | -- intersect: -65536279882.9412
[2025-06-03 13:08:28] 2025-06-03 17:08:09,700 | INFO     | intersect: -65536279882.9412
[2025-06-03 13:08:28] 2025-06-03 17:08:09,700 | INFO     | chi2: 1.0026271856423739
[2025-06-03 13:08:28] 2025-06-03 17:08:09,701 | INFO     | -- intersect: -65536279882.9412
[2025-06-03 13:08:28] 2025-06-03 17:08:09,701 | INFO     | current memory leak: 37.47 B/s (using 87 data points, chi2=1.00)
[2025-06-03 13:08:28] 2025-06-03 17:08:09,702 | INFO     | sufficient remaining disk space (74165780480 B)
[2025-06-03 13:08:28] 2025-06-03 17:08:09,702 | INFO     | ..............................
[2025-06-03 13:08:28] 2025-06-03 17:08:09,702 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-03 13:08:28] 2025-06-03 17:08:09,702 | INFO     | . Timing measurements:
[2025-06-03 13:08:28] 2025-06-03 17:08:09,703 | INFO     | . get job = 0 s
[2025-06-03 13:08:28] 2025-06-03 17:08:09,703 | INFO     | . initial setup = 2 s
[2025-06-03 13:08:28] 2025-06-03 17:08:09,703 | INFO     | . payload setup = 5 s
[2025-06-03 13:08:28] 2025-06-03 17:08:09,703 | INFO     | . stage-in = 0 s
[2025-06-03 13:08:28] 2025-06-03 17:08:09,703 | INFO     | . payload execution = 5699 s
[2025-06-03 13:08:28] 2025-06-03 17:08:09,703 | INFO     | . stage-out = 0 s
[2025-06-03 13:08:28] 2025-06-03 17:08:09,703 | INFO     | . log creation = 0 s
[2025-06-03 13:08:28] 2025-06-03 17:08:09,704 | INFO     | ..............................
[2025-06-03 13:08:28] 2025-06-03 17:08:09,812 | INFO     | size of work directory /tmp/boinchome/slots/3/PanDA_Pilot-6677580540: 4085256 B (within 2537553920 B limit)
[2025-06-03 13:08:28] 2025-06-03 17:08:09,812 | INFO     | pfn file=/tmp/boinchome/slots/3/PanDA_Pilot-6677580540/HITS.45006595._030350.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-03 13:08:28] 2025-06-03 17:08:09,812 | INFO     | total size of present files: 0 B (workdir size: 4085256 B)
[2025-06-03 13:08:28] 2025-06-03 17:08:09,813 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/3/PanDA_Pilot-6677580540/HITS.45006595._030350.pool.root.1 since it does not exist
[2025-06-03 13:08:28] 2025-06-03 17:08:09,827 | INFO     | 
[2025-06-03 13:08:28] 2025-06-03 17:08:09,827 | INFO     | job summary report
[2025-06-03 13:08:28] 2025-06-03 17:08:09,827 | INFO     | --------------------------------------------------
[2025-06-03 13:08:28] 2025-06-03 17:08:09,827 | INFO     | PanDA job id: 6677580540
[2025-06-03 13:08:28] 2025-06-03 17:08:09,827 | INFO     | task id: 45006595
[2025-06-03 13:08:28] 2025-06-03 17:08:09,828 | INFO     | errors: (none)
[2025-06-03 13:08:28] 2025-06-03 17:08:09,828 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 13:08:28] 2025-06-03 17:08:09,828 | INFO     | pilot state: finished 
[2025-06-03 13:08:28] 2025-06-03 17:08:09,828 | INFO     | transexitcode: 0
[2025-06-03 13:08:28] 2025-06-03 17:08:09,828 | INFO     | exeerrorcode: 0
[2025-06-03 13:08:28] 2025-06-03 17:08:09,828 | INFO     | exeerrordiag: 
[2025-06-03 13:08:28] 2025-06-03 17:08:09,829 | INFO     | exitcode: 0
[2025-06-03 13:08:28] 2025-06-03 17:08:09,829 | INFO     | exitmsg: OK
[2025-06-03 13:08:28] 2025-06-03 17:08:09,829 | INFO     | cpuconsumptiontime: 39761 s
[2025-06-03 13:08:28] 2025-06-03 17:08:09,829 | INFO     | nevents: 400
[2025-06-03 13:08:28] 2025-06-03 17:08:09,829 | INFO     | neventsw: 0
[2025-06-03 13:08:28] 2025-06-03 17:08:09,829 | INFO     | pid: 473310
[2025-06-03 13:08:28] 2025-06-03 17:08:09,830 | INFO     | pgrp: 473310
[2025-06-03 13:08:28] 2025-06-03 17:08:09,830 | INFO     | corecount: 8
[2025-06-03 13:08:28] 2025-06-03 17:08:09,830 | INFO     | event service: False
[2025-06-03 13:08:28] 2025-06-03 17:08:09,830 | INFO     | sizes: {0: 2405012, 1: 2405211, 4: 2405417, 11: 2405445, 5707: 2431989, 5708: 2431988, 5710: 2441169, 5715: 2441283}
[2025-06-03 13:08:28] 2025-06-03 17:08:09,830 | INFO     | --------------------------------------------------
[2025-06-03 13:08:28] 2025-06-03 17:08:09,830 | INFO     | 
[2025-06-03 13:08:28] 2025-06-03 17:08:09,831 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-06-03 13:08:28] 2025-06-03 17:08:09,847 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 13:08:28] 2025-06-03 17:08:09,847 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 13:08:28] 2025-06-03 17:08:09,848 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 13:08:28] 2025-06-03 17:08:09,848 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 13:08:28] 2025-06-03 17:08:09,848 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 13:08:28] 2025-06-03 17:08:09,848 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 13:08:28] 2025-06-03 17:08:09,848 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 13:08:28] 2025-06-03 17:08:09,849 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 13:08:28] 2025-06-03 17:08:09,849 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 13:08:28] 2025-06-03 17:08:09,849 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 13:08:28] 2025-06-03 17:08:09,849 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 13:08:28] 2025-06-03 17:08:09,849 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 13:08:28] 2025-06-03 17:08:09,850 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 13:08:28] 2025-06-03 17:08:09,850 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 13:08:28] 2025-06-03 17:08:09,850 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 13:08:28] 2025-06-03 17:08:09,850 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 13:08:28] 2025-06-03 17:08:09,850 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 13:08:28] 2025-06-03 17:08:09,850 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 13:08:28] 2025-06-03 17:08:09,851 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 13:08:28] 2025-06-03 17:08:09,851 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 13:08:28] 2025-06-03 17:08:09,851 | INFO     | job 6677580540 has completed (purged errors)
[2025-06-03 13:08:28] 2025-06-03 17:08:09,851 | INFO     | overall cleanup function is called
[2025-06-03 13:08:28] 2025-06-03 17:08:10,087 | INFO     | number of running child processes to parent process 473310: 1
[2025-06-03 13:08:28] 2025-06-03 17:08:10,088 | INFO     | maximum number of monitored processes: 6
[2025-06-03 13:08:28] 2025-06-03 17:08:10,088 | INFO     | aborting job monitoring since job object (job id=6677580540) has expired
[2025-06-03 13:08:28] 2025-06-03 17:08:10,860 | INFO     | --- collectZombieJob: --- 10, [473310]
[2025-06-03 13:08:28] 2025-06-03 17:08:10,860 | INFO     | zombie collector waiting for pid 473310
[2025-06-03 13:08:28] 2025-06-03 17:08:10,860 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 13:08:28] 2025-06-03 17:08:10,861 | INFO     | collected zombie processes
[2025-06-03 13:08:28] 2025-06-03 17:08:10,861 | INFO     | will attempt to kill all subprocesses of pid=473310
[2025-06-03 13:08:28] 2025-06-03 17:08:11,007 | INFO     | process IDs to be killed: [473310] (in reverse order)
[2025-06-03 13:08:28] 2025-06-03 17:08:11,075 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 13:08:28] 2025-06-03 17:08:11,075 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 13:08:28] 2025-06-03 17:08:11,084 | INFO     | did not find any defunct processes belonging to 473310
[2025-06-03 13:08:28] 2025-06-03 17:08:11,091 | INFO     | did not find any defunct processes belonging to 473310
[2025-06-03 13:08:28] 2025-06-03 17:08:11,091 | INFO     | ready for new job
[2025-06-03 13:08:28] 2025-06-03 17:08:11,091 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 13:08:28] 2025-06-03 17:08:11,093 | INFO     | **************************************
[2025-06-03 13:08:28] 2025-06-03 17:08:11,093 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 13:08:28] 2025-06-03 17:08:11,093 | INFO     | **************************************
[2025-06-03 13:08:28] 2025-06-03 17:08:11,093 | INFO     | 
[2025-06-03 13:08:28] 2025-06-03 17:08:11,106 | INFO     | architecture information:
[2025-06-03 13:08:28] 2025-06-03 17:08:11,107 | INFO     | executing command: cat /etc/os-release
[2025-06-03 13:08:28] 2025-06-03 17:08:11,120 | INFO     | cat /etc/os-release:
[2025-06-03 13:08:28] NAME="CentOS Linux"
[2025-06-03 13:08:28] VERSION="7 (Core)"
[2025-06-03 13:08:28] ID="centos"
[2025-06-03 13:08:28] ID_LIKE="rhel fedora"
[2025-06-03 13:08:28] VERSION_ID="7"
[2025-06-03 13:08:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 13:08:28] ANSI_COLOR="0;31"
[2025-06-03 13:08:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 13:08:28] HOME_URL="https://www.centos.org/"
[2025-06-03 13:08:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 13:08:28] 
[2025-06-03 13:08:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 13:08:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 13:08:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 13:08:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 13:08:28] 
[2025-06-03 13:08:28] 2025-06-03 17:08:11,120 | INFO     | **************************************
[2025-06-03 13:08:28] 2025-06-03 17:08:11,623 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-06-03 13:08:28] 2025-06-03 17:08:11,636 | INFO     | sufficient remaining disk space (74166829056 B)
[2025-06-03 13:08:28] 2025-06-03 17:08:11,636 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 13:08:28] 2025-06-03 17:08:11,636 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 13:08:28] 2025-06-03 17:08:11,637 | INFO     | update_server=False
[2025-06-03 13:08:28] 2025-06-03 17:08:11,637 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 13:08:28] 2025-06-03 17:08:11,637 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 13:08:28] 2025-06-03 17:08:11,637 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 13:08:28] 2025-06-03 17:08:11,637 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 13:08:28] 2025-06-03 17:08:11,638 | INFO     | aborting loop
[2025-06-03 13:08:28] 2025-06-03 17:08:12,478 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 13:08:28] 2025-06-03 17:08:12,478 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 13:08:28] 2025-06-03 17:08:12,478 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 13:08:28] 2025-06-03 17:08:12,575 | INFO     | all data control threads have been joined
[2025-06-03 13:08:28] 2025-06-03 17:08:12,642 | INFO     | [job] retrieve thread has finished
[2025-06-03 13:08:28] 2025-06-03 17:08:12,643 | INFO     | [job] queue monitor thread has finished
[2025-06-03 13:08:28] 2025-06-03 17:08:12,643 | INFO     | [job] job monitor thread has finished
[2025-06-03 13:08:28] 2025-06-03 17:08:12,723 | INFO     | all payload control threads have been joined
[2025-06-03 13:08:28] 2025-06-03 17:08:12,762 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 13:08:28] 2025-06-03 17:08:12,833 | INFO     | [payload] failed_post thread has finished
[2025-06-03 13:08:28] 2025-06-03 17:08:12,979 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 13:08:28] 2025-06-03 17:08:13,158 | INFO     | all job control threads have been joined
[2025-06-03 13:08:28] 2025-06-03 17:08:13,360 | INFO     | [data] copytool_in thread has finished
[2025-06-03 13:08:28] 2025-06-03 17:08:13,489 | INFO     | [payload] validate_post thread has finished
[2025-06-03 13:08:28] 2025-06-03 17:08:13,581 | INFO     | [data] control thread has finished
[2025-06-03 13:08:28] 2025-06-03 17:08:13,672 | INFO     | [job] validate thread has finished
[2025-06-03 13:08:28] 2025-06-03 17:08:13,710 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 13:08:28] 2025-06-03 17:08:13,727 | INFO     | [payload] control thread has finished
[2025-06-03 13:08:28] 2025-06-03 17:08:13,877 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 13:08:28] 2025-06-03 17:08:14,164 | INFO     | [job] control thread has finished
[2025-06-03 13:08:28] 2025-06-03 17:08:14,985 | INFO     | [data] copytool_out thread has finished
[2025-06-03 13:08:28] 2025-06-03 17:08:15,642 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 13:08:28] 2025-06-03 17:08:22,112 | INFO     | job.realtimelogging is not enabled
[2025-06-03 13:08:28] 2025-06-03 17:08:23,117 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 13:08:28] 2025-06-03 17:08:23,127 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140405129840448)>', '<ExcThread(monitor, started 140404276057856)>']
[2025-06-03 13:08:28] 2025-06-03 17:08:23,534 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 13:08:28] 2025-06-03 17:08:23,534 | INFO     | [monitor] control thread has ended
[2025-06-03 13:08:28] 2025-06-03 17:08:28,148 | INFO     | all workflow threads have been joined
[2025-06-03 13:08:28] 2025-06-03 17:08:28,149 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 13:08:28] 2025-06-03 17:08:28,149 | INFO     | traces error code: 0
[2025-06-03 13:08:28] 2025-06-03 17:08:28,149 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 13:08:28] 2025-06-03 17:08:28,256 [wrapper] ==== pilot stdout END ====
[2025-06-03 13:08:28] 2025-06-03 17:08:28,259 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 13:08:28] 2025-06-03 17:08:28,261 [wrapper] pilotpid: 466809
[2025-06-03 13:08:28] 2025-06-03 17:08:28,263 [wrapper] Pilot exit status: 0
[2025-06-03 13:08:28] 2025-06-03 17:08:28,272 [wrapper] pandaids: 6677580540
[2025-06-03 13:08:28] 2025-06-03 17:08:28,322 [wrapper] cleanup supervisor_pilot  688176 466810
[2025-06-03 13:08:28] 2025-06-03 17:08:28,324 [wrapper] Test setup, not cleaning
[2025-06-03 13:08:28] 2025-06-03 17:08:28,327 [wrapper] apfmon messages muted
[2025-06-03 13:08:28] 2025-06-03 17:08:28,329 [wrapper] ==== wrapper stdout END ====
[2025-06-03 13:08:28] 2025-06-03 17:08:28,331 [wrapper] ==== wrapper stderr END ====
[2025-06-03 13:08:28]  *** Error codes and diagnostics ***
[2025-06-03 13:08:28]     "exeErrorCode": 0,
[2025-06-03 13:08:28]     "exeErrorDiag": "",
[2025-06-03 13:08:28]     "pilotErrorCode": 0,
[2025-06-03 13:08:28]     "pilotErrorDiag": "",
[2025-06-03 13:08:28]  *** Listing of results directory ***
[2025-06-03 13:08:28] total 391168
[2025-06-03 13:08:28] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 06:57 pilot3.tar.gz
[2025-06-03 13:08:28] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 07:14 queuedata.json
[2025-06-03 13:08:28] -rwx------. 1 boincer umatlas     37140 Jun  3 07:14 runpilot2-wrapper.sh
[2025-06-03 13:08:28] -rw-r--r--. 1 boincer umatlas       100 Jun  3 11:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 13:08:28] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 11:32 run_atlas
[2025-06-03 13:08:28] -rw-r--r--. 1 boincer umatlas       105 Jun  3 11:32 job.xml
[2025-06-03 13:08:28] -rw-r--r--. 2 boincer umatlas 217685594 Jun  3 11:32 EVNT.45006593._001215.pool.root.1
[2025-06-03 13:08:28] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 11:32 start_atlas.sh
[2025-06-03 13:08:28] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 11:32 shared
[2025-06-03 13:08:28] -rw-r--r--. 2 boincer umatlas    508882 Jun  3 11:32 input.tar.gz
[2025-06-03 13:08:28] -rw-r--r--. 1 boincer umatlas         0 Jun  3 11:32 boinc_lockfile
[2025-06-03 13:08:28] -rw-r--r--. 1 boincer umatlas      2524 Jun  3 11:32 pandaJob.out
[2025-06-03 13:08:28] -rw-------. 1 boincer umatlas    983735 Jun  3 11:32 agis_schedconf.cvmfs.json
[2025-06-03 13:08:28] -rw-------. 1 boincer umatlas   1603667 Jun  3 11:32 agis_ddmendpoints.agis.ALL.json
[2025-06-03 13:08:28] drwx------. 4 boincer umatlas      4096 Jun  3 11:32 pilot3
[2025-06-03 13:08:28] -rw-r--r--. 1 boincer umatlas      6657 Jun  3 13:00 init_data.xml
[2025-06-03 13:08:28] -rw-------. 1 boincer umatlas 177271964 Jun  3 13:07 HITS.45006595._030350.pool.root.1
[2025-06-03 13:08:28] -rw-------. 1 boincer umatlas        95 Jun  3 13:07 pilot_heartbeat.json
[2025-06-03 13:08:28] -rw-r--r--. 1 boincer umatlas       530 Jun  3 13:07 boinc_task_state.xml
[2025-06-03 13:08:28] -rw-------. 1 boincer umatlas      1032 Jun  3 13:07 memory_monitor_summary.json
[2025-06-03 13:08:28] -rw-------. 1 boincer umatlas    334180 Jun  3 13:08 log.45006595._030350.job.log.tgz.1
[2025-06-03 13:08:28] -rw-------. 1 boincer umatlas      7704 Jun  3 13:08 heartbeat.json
[2025-06-03 13:08:28] -rw-r--r--. 1 boincer umatlas        27 Jun  3 13:08 wrapper_checkpoint.txt
[2025-06-03 13:08:28] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 13:08 boinc_mmap_file
[2025-06-03 13:08:28] -rw-------. 1 boincer umatlas      4425 Jun  3 13:08 pilotlog.txt
[2025-06-03 13:08:28] -rw-------. 1 boincer umatlas    552316 Jun  3 13:08 log.45006595._030350.job.log.1
[2025-06-03 13:08:28] -rw-------. 1 boincer umatlas       357 Jun  3 13:08 output.list
[2025-06-03 13:08:28] -rw-r--r--. 1 boincer umatlas       620 Jun  3 13:08 runtime_log
[2025-06-03 13:08:28] -rw-------. 1 boincer umatlas    901120 Jun  3 13:08 result.tar.gz
[2025-06-03 13:08:28] -rw-r--r--. 1 boincer umatlas      8644 Jun  3 13:08 runtime_log.err
[2025-06-03 13:08:28] -rw-------. 1 boincer umatlas       648 Jun  3 13:08 LNQKDmHmeg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmJRYKDm0HgNkm.diag
[2025-06-03 13:08:28] -rw-r--r--. 1 boincer umatlas     22356 Jun  3 13:08 stderr.txt
[2025-06-03 13:08:28] HITS file was successfully produced:
[2025-06-03 13:08:28] -rw-------. 1 boincer umatlas 177271964 Jun  3 13:07 shared/HITS.pool.root.1
[2025-06-03 13:08:28]  *** Contents of shared directory: ***
[2025-06-03 13:08:28] total 387104
[2025-06-03 13:08:28] -rw-r--r--. 2 boincer umatlas 217685594 Jun  3 11:32 ATLAS.root_0
[2025-06-03 13:08:28] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 11:32 start_atlas.sh
[2025-06-03 13:08:28] -rw-r--r--. 2 boincer umatlas    508882 Jun  3 11:32 input.tar.gz
[2025-06-03 13:08:28] -rw-------. 1 boincer umatlas 177271964 Jun  3 13:07 HITS.pool.root.1
[2025-06-03 13:08:28] -rw-------. 1 boincer umatlas    901120 Jun  3 13:08 result.tar.gz
13:08:29 (463159): run_atlas exited; CPU time 39898.272424
13:08:29 (463159): called boinc_finish(0)

</stderr_txt>
]]>

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