Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:36:23 (331348): wrapper (7.7.26015): starting
10:36:23 (331348): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 10:36:23] Arguments: --nthreads 8
[2025-06-03 10:36:23] Threads: 8
[2025-06-03 10:36:23] Checking for CVMFS
[2025-06-03 10:36:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 10:36:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 10:36:23] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 10:36:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 10:36:23] 2.12.6.0 3733875 171210 395504 146746 0 56 23326104 32935937 3664 130560 1 380283792 99.638 384194720 25461 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 10:36:23] CVMFS is ok
[2025-06-03 10:36:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 10:36:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 10:36:23] Further information can be found at the LHC@home message board.
[2025-06-03 10:36:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 10:36:23] Checking for apptainer binary...
[2025-06-03 10:36:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 10:36:23] Running /usr/bin/apptainer --version
[2025-06-03 10:36:23] apptainer version 1.4.1-1.el9
[2025-06-03 10:36:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 10:36:23] c-6-2.aglt2.org
[2025-06-03 10:36:23] apptainer works
[2025-06-03 10:36:23] Set ATHENA_PROC_NUMBER=8
[2025-06-03 10:36:23] Set ATHENA_CORE_NUMBER=8
[2025-06-03 10:36:23] Starting ATLAS job with PandaID=6677601653
[2025-06-03 10:36:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 12:11:53]  *** The last 200 lines of the pilot log: ***
[2025-06-03 12:11:53]  is_altstaged=None
[2025-06-03 12:11:53]  is_tar=False
[2025-06-03 12:11:53]  lfn=log.45006595._031256.job.log.tgz.1
[2025-06-03 12:11:53]  mtime=0
[2025-06-03 12:11:53]  protocol_id=None
[2025-06-03 12:11:53]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 12:11:53]  replicas=None
[2025-06-03 12:11:53]  scope=mc23_13p6TeV
[2025-06-03 12:11:53]  status=None
[2025-06-03 12:11:53]  status_code=0
[2025-06-03 12:11:53]  storage_token=
[2025-06-03 12:11:53]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6677601653/log.45006595._031256.job.log.tgz.1
[2025-06-03 12:11:53]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7e/8b/log.45006595._031256.job.log.tgz.1
[2025-06-03 12:11:53]  workdir=None
[2025-06-03 12:11:53] ]
[2025-06-03 12:11:53] 2025-06-03 16:11:35,589 | INFO     | transferring file log.45006595._031256.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6677601653/log.45006595._031256.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 12:11:53] 2025-06-03 16:11:35,589 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6677601653/log.45006595._031256.job.log.tgz.1 /tmp/boinchome/slots/1/log.45006595._031256.job
[2025-06-03 12:11:53] 2025-06-03 16:11:35,608 | INFO     | adding to output.list: log.45006595._031256.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7e/8b/log.45006595._031256.job.log.tg
[2025-06-03 12:11:53] 2025-06-03 16:11:35,608 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 12:11:53] 2025-06-03 16:11:35,609 | INFO     | summary of transferred files:
[2025-06-03 12:11:53] 2025-06-03 16:11:35,609 | INFO     |  -- lfn=log.45006595._031256.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 12:11:53] 2025-06-03 16:11:35,609 | INFO     | stage-out finished correctly
[2025-06-03 12:11:53] 2025-06-03 16:11:36,162 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 12:11:53] 2025-06-03 16:11:36,269 | INFO     | job 6677601653 has state=finished
[2025-06-03 12:11:53] 2025-06-03 16:11:36,274 | INFO     | preparing for final server update for job 6677601653 in state='finished'
[2025-06-03 12:11:53] 2025-06-03 16:11:36,275 | INFO     | this job has now completed (state=finished)
[2025-06-03 12:11:53] 2025-06-03 16:11:36,275 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 12:11:53] 2025-06-03 16:11:36,275 | INFO     | log transfer has been attempted: DONE
[2025-06-03 12:11:53] 2025-06-03 16:11:36,275 | INFO     | job 6677601653 has finished - writing final server update
[2025-06-03 12:11:53] 2025-06-03 16:11:36,275 | INFO     | total number of processed events: 400 (read)
[2025-06-03 12:11:53] 2025-06-03 16:11:36,311 | INFO     | executing command: lscpu
[2025-06-03 12:11:53] 2025-06-03 16:11:36,365 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 12:11:53] 2025-06-03 16:11:36,372 | WARNING  | process 341348 can no longer be monitored (due to stat problems) - aborting
[2025-06-03 12:11:53] 2025-06-03 16:11:36,373 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6677601653/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 12:11:53] 2025-06-03 16:11:36,642 | INFO     | number of running child processes to parent process 341348: 1
[2025-06-03 12:11:53] 2025-06-03 16:11:36,643 | INFO     | maximum number of monitored processes: 6
[2025-06-03 12:11:53] 2025-06-03 16:11:38,055 | INFO     | PID=334916 has CPU usage=11.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-03 12:11:53] 2025-06-03 16:11:38,056 | INFO     | .. there are 5 such processes running
[2025-06-03 12:11:53] 2025-06-03 16:11:39,146 | INFO     | monitor loop #421: job 0:6677601653 is in state 'finished'
[2025-06-03 12:11:53] 2025-06-03 16:11:39,147 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 12:11:53] 2025-06-03 16:11:39,998 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 12:11:53] 2025-06-03 16:11:39,999 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6677601653/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 12:11:53] 2025-06-03 16:11:40,000 | INFO     | extracted standard info from prmon json
[2025-06-03 12:11:53] 2025-06-03 16:11:40,000 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 12:11:53] 2025-06-03 16:11:40,000 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 12:11:53] 2025-06-03 16:11:40,000 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 12:11:53] 2025-06-03 16:11:40,001 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 12:11:53] 2025-06-03 16:11:40,003 | INFO     | fitting pss+swap vs Time
[2025-06-03 12:11:53] 2025-06-03 16:11:40,003 | INFO     | sum of square deviations: 197203697.5
[2025-06-03 12:11:53] 2025-06-03 16:11:40,004 | INFO     | sum of deviations: -3921953550.500001
[2025-06-03 12:11:53] 2025-06-03 16:11:40,004 | INFO     | mean x: 1748964316.5
[2025-06-03 12:11:53] 2025-06-03 16:11:40,004 | INFO     | mean y: 2229943.034883721
[2025-06-03 12:11:53] 2025-06-03 16:11:40,004 | INFO     | -- intersect: 34785334406.859566
[2025-06-03 12:11:53] 2025-06-03 16:11:40,004 | INFO     | intersect: 34785334406.859566
[2025-06-03 12:11:53] 2025-06-03 16:11:40,005 | INFO     | chi2: 1.064767801726955
[2025-06-03 12:11:53] 2025-06-03 16:11:40,005 | INFO     | -- intersect: 34785334406.859566
[2025-06-03 12:11:53] 2025-06-03 16:11:40,005 | INFO     | current memory leak: -19.89 B/s (using 86 data points, chi2=1.06)
[2025-06-03 12:11:53] 2025-06-03 16:11:40,005 | INFO     | ..............................
[2025-06-03 12:11:53] 2025-06-03 16:11:40,006 | INFO     | . Timing measurements:
[2025-06-03 12:11:53] 2025-06-03 16:11:40,006 | INFO     | . get job = 0 s
[2025-06-03 12:11:53] 2025-06-03 16:11:40,006 | INFO     | . initial setup = 2 s
[2025-06-03 12:11:53] 2025-06-03 16:11:40,006 | INFO     | . payload setup = 6 s
[2025-06-03 12:11:53] 2025-06-03 16:11:40,006 | INFO     | . stage-in = 0 s
[2025-06-03 12:11:53] 2025-06-03 16:11:40,006 | INFO     | . payload execution = 5675 s
[2025-06-03 12:11:53] 2025-06-03 16:11:40,006 | INFO     | . stage-out = 0 s
[2025-06-03 12:11:53] 2025-06-03 16:11:40,006 | INFO     | . log creation = 0 s
[2025-06-03 12:11:53] 2025-06-03 16:11:40,007 | INFO     | ..............................
[2025-06-03 12:11:53] 2025-06-03 16:11:40,343 | INFO     | 
[2025-06-03 12:11:53] 2025-06-03 16:11:40,344 | INFO     | job summary report
[2025-06-03 12:11:53] 2025-06-03 16:11:40,344 | INFO     | --------------------------------------------------
[2025-06-03 12:11:53] 2025-06-03 16:11:40,344 | INFO     | PanDA job id: 6677601653
[2025-06-03 12:11:53] 2025-06-03 16:11:40,344 | INFO     | task id: 45006595
[2025-06-03 12:11:53] 2025-06-03 16:11:40,344 | INFO     | errors: (none)
[2025-06-03 12:11:53] 2025-06-03 16:11:40,344 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 12:11:53] 2025-06-03 16:11:40,344 | INFO     | pilot state: finished 
[2025-06-03 12:11:53] 2025-06-03 16:11:40,345 | INFO     | transexitcode: 0
[2025-06-03 12:11:53] 2025-06-03 16:11:40,345 | INFO     | exeerrorcode: 0
[2025-06-03 12:11:53] 2025-06-03 16:11:40,345 | INFO     | exeerrordiag: 
[2025-06-03 12:11:53] 2025-06-03 16:11:40,345 | INFO     | exitcode: 0
[2025-06-03 12:11:53] 2025-06-03 16:11:40,345 | INFO     | exitmsg: OK
[2025-06-03 12:11:53] 2025-06-03 16:11:40,345 | INFO     | cpuconsumptiontime: 38780 s
[2025-06-03 12:11:53] 2025-06-03 16:11:40,345 | INFO     | nevents: 400
[2025-06-03 12:11:53] 2025-06-03 16:11:40,345 | INFO     | neventsw: 0
[2025-06-03 12:11:53] 2025-06-03 16:11:40,345 | INFO     | pid: 341348
[2025-06-03 12:11:53] 2025-06-03 16:11:40,346 | INFO     | pgrp: 341348
[2025-06-03 12:11:53] 2025-06-03 16:11:40,346 | INFO     | corecount: 8
[2025-06-03 12:11:53] 2025-06-03 16:11:40,346 | INFO     | event service: False
[2025-06-03 12:11:53] 2025-06-03 16:11:40,346 | INFO     | sizes: {0: 2405183, 1: 2405183, 4: 2405417, 11: 2405445, 5685: 2431988, 5686: 2440929, 5687: 2441113, 5691: 2441283}
[2025-06-03 12:11:53] 2025-06-03 16:11:40,346 | INFO     | --------------------------------------------------
[2025-06-03 12:11:53] 2025-06-03 16:11:40,346 | INFO     | 
[2025-06-03 12:11:53] 2025-06-03 16:11:40,346 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-03 12:11:53] 2025-06-03 16:11:40,394 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 12:11:53] 2025-06-03 16:11:40,394 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 12:11:53] 2025-06-03 16:11:40,395 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 12:11:53] 2025-06-03 16:11:40,395 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 12:11:53] 2025-06-03 16:11:40,395 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 12:11:53] 2025-06-03 16:11:40,395 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 12:11:53] 2025-06-03 16:11:40,395 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 12:11:53] 2025-06-03 16:11:40,395 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 12:11:53] 2025-06-03 16:11:40,395 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 12:11:53] 2025-06-03 16:11:40,396 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 12:11:53] 2025-06-03 16:11:40,396 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 12:11:53] 2025-06-03 16:11:40,396 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 12:11:53] 2025-06-03 16:11:40,396 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 12:11:53] 2025-06-03 16:11:40,396 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 12:11:53] 2025-06-03 16:11:40,396 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 12:11:53] 2025-06-03 16:11:40,396 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 12:11:53] 2025-06-03 16:11:40,396 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 12:11:53] 2025-06-03 16:11:40,397 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 12:11:53] 2025-06-03 16:11:40,397 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 12:11:53] 2025-06-03 16:11:40,397 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 12:11:53] 2025-06-03 16:11:40,397 | INFO     | job 6677601653 has completed (purged errors)
[2025-06-03 12:11:53] 2025-06-03 16:11:40,397 | INFO     | overall cleanup function is called
[2025-06-03 12:11:53] 2025-06-03 16:11:41,405 | INFO     | --- collectZombieJob: --- 10, [341348]
[2025-06-03 12:11:53] 2025-06-03 16:11:41,406 | INFO     | zombie collector waiting for pid 341348
[2025-06-03 12:11:53] 2025-06-03 16:11:41,406 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 12:11:53] 2025-06-03 16:11:41,406 | INFO     | collected zombie processes
[2025-06-03 12:11:53] 2025-06-03 16:11:41,406 | INFO     | will attempt to kill all subprocesses of pid=341348
[2025-06-03 12:11:53] 2025-06-03 16:11:41,669 | INFO     | process IDs to be killed: [341348] (in reverse order)
[2025-06-03 12:11:53] 2025-06-03 16:11:41,741 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 12:11:53] 2025-06-03 16:11:41,742 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 12:11:53] 2025-06-03 16:11:41,750 | INFO     | did not find any defunct processes belonging to 341348
[2025-06-03 12:11:53] 2025-06-03 16:11:41,758 | INFO     | did not find any defunct processes belonging to 341348
[2025-06-03 12:11:53] 2025-06-03 16:11:41,758 | INFO     | ready for new job
[2025-06-03 12:11:53] 2025-06-03 16:11:41,758 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 12:11:53] 2025-06-03 16:11:41,760 | INFO     | **************************************
[2025-06-03 12:11:53] 2025-06-03 16:11:41,760 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 12:11:53] 2025-06-03 16:11:41,760 | INFO     | **************************************
[2025-06-03 12:11:53] 2025-06-03 16:11:41,760 | INFO     | 
[2025-06-03 12:11:53] 2025-06-03 16:11:41,774 | INFO     | architecture information:
[2025-06-03 12:11:53] 2025-06-03 16:11:41,775 | INFO     | executing command: cat /etc/os-release
[2025-06-03 12:11:53] 2025-06-03 16:11:41,787 | INFO     | cat /etc/os-release:
[2025-06-03 12:11:53] NAME="CentOS Linux"
[2025-06-03 12:11:53] VERSION="7 (Core)"
[2025-06-03 12:11:53] ID="centos"
[2025-06-03 12:11:53] ID_LIKE="rhel fedora"
[2025-06-03 12:11:53] VERSION_ID="7"
[2025-06-03 12:11:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 12:11:53] ANSI_COLOR="0;31"
[2025-06-03 12:11:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 12:11:53] HOME_URL="https://www.centos.org/"
[2025-06-03 12:11:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 12:11:53] 
[2025-06-03 12:11:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 12:11:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 12:11:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 12:11:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 12:11:53] 
[2025-06-03 12:11:53] 2025-06-03 16:11:41,789 | INFO     | **************************************
[2025-06-03 12:11:53] 2025-06-03 16:11:42,292 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-03 12:11:53] 2025-06-03 16:11:42,308 | INFO     | sufficient remaining disk space (74547462144 B)
[2025-06-03 12:11:53] 2025-06-03 16:11:42,308 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 12:11:53] 2025-06-03 16:11:42,308 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 12:11:53] 2025-06-03 16:11:42,308 | INFO     | update_server=False
[2025-06-03 12:11:53] 2025-06-03 16:11:42,308 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 12:11:53] 2025-06-03 16:11:42,309 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 12:11:53] 2025-06-03 16:11:42,309 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 12:11:53] 2025-06-03 16:11:42,310 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 12:11:53] 2025-06-03 16:11:42,310 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 12:11:53] 2025-06-03 16:11:42,310 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 12:11:53] 2025-06-03 16:11:42,654 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 12:11:53] 2025-06-03 16:11:42,655 | INFO     | aborting loop
[2025-06-03 12:11:53] 2025-06-03 16:11:42,785 | INFO     | all payload control threads have been joined
[2025-06-03 12:11:53] 2025-06-03 16:11:43,106 | INFO     | all job control threads have been joined
[2025-06-03 12:11:53] 2025-06-03 16:11:43,206 | INFO     | all data control threads have been joined
[2025-06-03 12:11:53] 2025-06-03 16:11:43,314 | INFO     | [job] retrieve thread has finished
[2025-06-03 12:11:53] 2025-06-03 16:11:43,475 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 12:11:53] 2025-06-03 16:11:43,539 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 12:11:53] 2025-06-03 16:11:43,660 | INFO     | [job] job monitor thread has finished
[2025-06-03 12:11:53] 2025-06-03 16:11:43,733 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 12:11:53] 2025-06-03 16:11:43,790 | INFO     | [payload] control thread has finished
[2025-06-03 12:11:53] 2025-06-03 16:11:44,039 | INFO     | [payload] failed_post thread has finished
[2025-06-03 12:11:53] 2025-06-03 16:11:44,052 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 12:11:53] 2025-06-03 16:11:44,112 | INFO     | [job] control thread has finished
[2025-06-03 12:11:53] 2025-06-03 16:11:44,211 | INFO     | [data] control thread has finished
[2025-06-03 12:11:53] 2025-06-03 16:11:44,477 | INFO     | [data] copytool_in thread has finished
[2025-06-03 12:11:53] 2025-06-03 16:11:44,606 | INFO     | [job] validate thread has finished
[2025-06-03 12:11:53] 2025-06-03 16:11:44,752 | INFO     | [payload] validate_post thread has finished
[2025-06-03 12:11:53] 2025-06-03 16:11:44,754 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 12:11:53] 2025-06-03 16:11:45,130 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 12:11:53] 2025-06-03 16:11:45,742 | INFO     | [data] copytool_out thread has finished
[2025-06-03 12:11:53] 2025-06-03 16:11:46,136 | INFO     | [job] queue monitor thread has finished
[2025-06-03 12:11:53] 2025-06-03 16:11:46,316 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 12:11:53] 2025-06-03 16:11:47,724 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139845554440000)>', '<ExcThread(monitor, started 139844915283712)>']
[2025-06-03 12:11:53] 2025-06-03 16:11:48,342 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 12:11:53] 2025-06-03 16:11:48,343 | INFO     | [monitor] control thread has ended
[2025-06-03 12:11:53] 2025-06-03 16:11:52,748 | INFO     | all workflow threads have been joined
[2025-06-03 12:11:53] 2025-06-03 16:11:52,749 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 12:11:53] 2025-06-03 16:11:52,750 | INFO     | traces error code: 0
[2025-06-03 12:11:53] 2025-06-03 16:11:52,750 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 12:11:53] 2025-06-03 16:11:52,911 [wrapper] ==== pilot stdout END ====
[2025-06-03 12:11:53] 2025-06-03 16:11:52,913 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 12:11:53] 2025-06-03 16:11:52,915 [wrapper] pilotpid: 334916
[2025-06-03 12:11:53] 2025-06-03 16:11:52,917 [wrapper] Pilot exit status: 0
[2025-06-03 12:11:53] 2025-06-03 16:11:52,926 [wrapper] pandaids: 6677601653
[2025-06-03 12:11:53] 2025-06-03 16:11:52,974 [wrapper] cleanup supervisor_pilot  545893 334917
[2025-06-03 12:11:53] 2025-06-03 16:11:52,976 [wrapper] Test setup, not cleaning
[2025-06-03 12:11:53] 2025-06-03 16:11:52,979 [wrapper] apfmon messages muted
[2025-06-03 12:11:53] 2025-06-03 16:11:52,981 [wrapper] ==== wrapper stdout END ====
[2025-06-03 12:11:53] 2025-06-03 16:11:52,983 [wrapper] ==== wrapper stderr END ====
[2025-06-03 12:11:53]  *** Error codes and diagnostics ***
[2025-06-03 12:11:53]     "exeErrorCode": 0,
[2025-06-03 12:11:53]     "exeErrorDiag": "",
[2025-06-03 12:11:53]     "pilotErrorCode": 0,
[2025-06-03 12:11:53]     "pilotErrorDiag": "",
[2025-06-03 12:11:53]  *** Listing of results directory ***
[2025-06-03 12:11:53] total 397268
[2025-06-03 12:11:53] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 07:43 pilot3.tar.gz
[2025-06-03 12:11:53] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 07:49 queuedata.json
[2025-06-03 12:11:53] -rwx------. 1 boincer umatlas     37140 Jun  3 07:49 runpilot2-wrapper.sh
[2025-06-03 12:11:53] -rw-r--r--. 1 boincer umatlas       100 Jun  3 10:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 12:11:53] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 10:36 run_atlas
[2025-06-03 12:11:53] -rw-r--r--. 1 boincer umatlas       105 Jun  3 10:36 job.xml
[2025-06-03 12:11:53] -rw-r--r--. 2 boincer umatlas 217264291 Jun  3 10:36 EVNT.45006593._001253.pool.root.1
[2025-06-03 12:11:53] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 10:36 start_atlas.sh
[2025-06-03 12:11:53] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 10:36 shared
[2025-06-03 12:11:53] -rw-r--r--. 2 boincer umatlas    508884 Jun  3 10:36 input.tar.gz
[2025-06-03 12:11:53] -rw-r--r--. 1 boincer umatlas         0 Jun  3 10:36 boinc_lockfile
[2025-06-03 12:11:53] -rw-r--r--. 1 boincer umatlas      2524 Jun  3 10:36 pandaJob.out
[2025-06-03 12:11:53] -rw-------. 1 boincer umatlas    982716 Jun  3 10:36 agis_schedconf.cvmfs.json
[2025-06-03 12:11:53] -rw-------. 1 boincer umatlas   1603667 Jun  3 10:36 agis_ddmendpoints.agis.ALL.json
[2025-06-03 12:11:53] drwx------. 4 boincer umatlas      4096 Jun  3 10:36 pilot3
[2025-06-03 12:11:53] -rw-r--r--. 1 boincer umatlas      6657 Jun  3 12:00 init_data.xml
[2025-06-03 12:11:53] -rw-------. 1 boincer umatlas 183936901 Jun  3 12:10 HITS.45006595._031256.pool.root.1
[2025-06-03 12:11:53] -rw-r--r--. 1 boincer umatlas       530 Jun  3 12:11 boinc_task_state.xml
[2025-06-03 12:11:53] -rw-------. 1 boincer umatlas        95 Jun  3 12:11 pilot_heartbeat.json
[2025-06-03 12:11:53] -rw-------. 1 boincer umatlas      1030 Jun  3 12:11 memory_monitor_summary.json
[2025-06-03 12:11:53] -rw-------. 1 boincer umatlas    332468 Jun  3 12:11 log.45006595._031256.job.log.tgz.1
[2025-06-03 12:11:53] -rw-------. 1 boincer umatlas      7705 Jun  3 12:11 heartbeat.json
[2025-06-03 12:11:53] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 12:11 boinc_mmap_file
[2025-06-03 12:11:53] -rw-r--r--. 1 boincer umatlas        27 Jun  3 12:11 wrapper_checkpoint.txt
[2025-06-03 12:11:53] -rw-------. 1 boincer umatlas      4476 Jun  3 12:11 pilotlog.txt
[2025-06-03 12:11:53] -rw-------. 1 boincer umatlas    550417 Jun  3 12:11 log.45006595._031256.job.log.1
[2025-06-03 12:11:53] -rw-------. 1 boincer umatlas       357 Jun  3 12:11 output.list
[2025-06-03 12:11:53] -rw-r--r--. 1 boincer umatlas       620 Jun  3 12:11 runtime_log
[2025-06-03 12:11:53] -rw-------. 1 boincer umatlas    901120 Jun  3 12:11 result.tar.gz
[2025-06-03 12:11:53] -rw-r--r--. 1 boincer umatlas      8644 Jun  3 12:11 runtime_log.err
[2025-06-03 12:11:53] -rw-------. 1 boincer umatlas       648 Jun  3 12:11 ouwLDmJKfg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmprjKDmzrByGo.diag
[2025-06-03 12:11:53] -rw-r--r--. 1 boincer umatlas     21516 Jun  3 12:11 stderr.txt
[2025-06-03 12:11:53] HITS file was successfully produced:
[2025-06-03 12:11:53] -rw-------. 1 boincer umatlas 183936901 Jun  3 12:10 shared/HITS.pool.root.1
[2025-06-03 12:11:53]  *** Contents of shared directory: ***
[2025-06-03 12:11:53] total 393208
[2025-06-03 12:11:53] -rw-r--r--. 2 boincer umatlas 217264291 Jun  3 10:36 ATLAS.root_0
[2025-06-03 12:11:53] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 10:36 start_atlas.sh
[2025-06-03 12:11:53] -rw-r--r--. 2 boincer umatlas    508884 Jun  3 10:36 input.tar.gz
[2025-06-03 12:11:53] -rw-------. 1 boincer umatlas 183936901 Jun  3 12:10 HITS.pool.root.1
[2025-06-03 12:11:53] -rw-------. 1 boincer umatlas    901120 Jun  3 12:11 result.tar.gz
12:11:54 (331348): run_atlas exited; CPU time 38910.832606
12:11:54 (331348): called boinc_finish(0)

</stderr_txt>
]]>

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