Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
03:59:27 (756874): wrapper (7.7.26015): starting
03:59:27 (756874): wrapper: running run_atlas (--nthreads 4)
[2025-06-03 03:59:27] Arguments: --nthreads 4
[2025-06-03 03:59:27] Threads: 4
[2025-06-03 03:59:27] Checking for CVMFS
[2025-06-03 03:59:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 03:59:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 03:59:27] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 03:59:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 03:59:28] 2.12.7.0 412895 417 55428 146723 3 187 5511518 6144000 2751 130560 0 979116 99.996 144354 16433 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.46:3128 1
[2025-06-03 03:59:28] CVMFS is ok
[2025-06-03 03:59:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 03:59:28] Checking for apptainer binary...
[2025-06-03 03:59:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 03:59:28] Running /usr/bin/apptainer --version
[2025-06-03 03:59:28] apptainer version 1.4.0
[2025-06-03 03:59:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 03:59:28] Ryzen5
[2025-06-03 03:59:28] apptainer works
[2025-06-03 03:59:28] Set ATHENA_PROC_NUMBER=4
[2025-06-03 03:59:28] Set ATHENA_CORE_NUMBER=4
[2025-06-03 03:59:28] Starting ATLAS job with PandaID=6677378475
[2025-06-03 03:59:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc4/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 05:42:34]  *** The last 200 lines of the pilot log: ***
[2025-06-03 05:42:34] 2025-06-03 03:42:12,202 | INFO     | using path: /var/lib/boinc4/slots/0/PanDA_Pilot-6677378475/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 05:42:34] 2025-06-03 03:42:12,297 | INFO     | number of running child processes to parent process 769186: 1
[2025-06-03 05:42:34] 2025-06-03 03:42:12,297 | INFO     | maximum number of monitored processes: 6
[2025-06-03 05:42:34] 2025-06-03 03:42:14,800 | INFO     | monitor loop #464: job 0:6677378475 is in state 'finished'
[2025-06-03 05:42:34] 2025-06-03 03:42:14,800 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 05:42:34] 2025-06-03 03:42:15,070 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 05:42:34] 2025-06-03 03:42:15,070 | INFO     | using path: /var/lib/boinc4/slots/0/PanDA_Pilot-6677378475/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 05:42:34] 2025-06-03 03:42:15,071 | INFO     | extracted standard info from prmon json
[2025-06-03 05:42:34] 2025-06-03 03:42:15,071 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 05:42:34] 2025-06-03 03:42:15,071 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 05:42:34] 2025-06-03 03:42:15,071 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 05:42:34] 2025-06-03 03:42:15,071 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 05:42:34] 2025-06-03 03:42:15,073 | INFO     | fitting pss+swap vs Time
[2025-06-03 05:42:34] 2025-06-03 03:42:15,073 | INFO     | sum of square deviations: 319447850.0
[2025-06-03 05:42:34] 2025-06-03 03:42:15,073 | INFO     | sum of deviations: 12685632589.999998
[2025-06-03 05:42:34] 2025-06-03 03:42:15,073 | INFO     | mean x: 1748919045.0
[2025-06-03 05:42:34] 2025-06-03 03:42:15,073 | INFO     | mean y: 2315306.9405940594
[2025-06-03 05:42:34] 2025-06-03 03:42:15,073 | INFO     | -- intersect: -69449222509.08688
[2025-06-03 05:42:34] 2025-06-03 03:42:15,074 | INFO     | intersect: -69449222509.08688
[2025-06-03 05:42:34] 2025-06-03 03:42:15,074 | INFO     | chi2: 1.4518766371535181
[2025-06-03 05:42:34] 2025-06-03 03:42:15,074 | INFO     | sum of square deviations: 274312120.0
[2025-06-03 05:42:34] 2025-06-03 03:42:15,074 | INFO     | sum of deviations: 11977100113.500006
[2025-06-03 05:42:34] 2025-06-03 03:42:15,074 | INFO     | mean x: 1748918892.5
[2025-06-03 05:42:34] 2025-06-03 03:42:15,074 | INFO     | mean y: 2312912.5729166665
[2025-06-03 05:42:34] 2025-06-03 03:42:15,074 | INFO     | -- intersect: -76359521430.96266
[2025-06-03 05:42:34] 2025-06-03 03:42:15,075 | INFO     | intersect: -76359521430.96266
[2025-06-03 05:42:34] 2025-06-03 03:42:15,075 | INFO     | chi2: 1.455176115708007
[2025-06-03 05:42:34] 2025-06-03 03:42:15,075 | INFO     | current chi2=1.455176115708007 (change=-0.2272561228726478 %)
[2025-06-03 05:42:34] 2025-06-03 03:42:15,075 | INFO     | right removable region: 95
[2025-06-03 05:42:34] 2025-06-03 03:42:15,075 | INFO     | sum of square deviations: 274312120.0
[2025-06-03 05:42:34] 2025-06-03 03:42:15,075 | INFO     | sum of deviations: -504876931.0
[2025-06-03 05:42:34] 2025-06-03 03:42:15,075 | INFO     | mean x: 1748919197.5
[2025-06-03 05:42:34] 2025-06-03 03:42:15,075 | INFO     | mean y: 2358716.2291666665
[2025-06-03 05:42:34] 2025-06-03 03:42:15,076 | INFO     | -- intersect: 3221279400.45115
[2025-06-03 05:42:34] 2025-06-03 03:42:15,076 | INFO     | intersect: 3221279400.45115
[2025-06-03 05:42:34] 2025-06-03 03:42:15,076 | INFO     | chi2: 0.012387864674895815
[2025-06-03 05:42:34] 2025-06-03 03:42:15,076 | INFO     | current chi2=0.012387864674895815 (change=99.14676878476514 %)
[2025-06-03 05:42:34] 2025-06-03 03:42:15,076 | INFO     | sum of square deviations: 233641590.0
[2025-06-03 05:42:34] 2025-06-03 03:42:15,076 | INFO     | sum of deviations: 312183726.00000006
[2025-06-03 05:42:34] 2025-06-03 03:42:15,076 | INFO     | mean x: 1748919350.0
[2025-06-03 05:42:34] 2025-06-03 03:42:15,076 | INFO     | mean y: 2355631.923076923
[2025-06-03 05:42:34] 2025-06-03 03:42:15,076 | INFO     | -- intersect: -2334489272.9438095
[2025-06-03 05:42:34] 2025-06-03 03:42:15,077 | INFO     | intersect: -2334489272.9438095
[2025-06-03 05:42:34] 2025-06-03 03:42:15,077 | INFO     | chi2: 0.009459878198085286
[2025-06-03 05:42:34] 2025-06-03 03:42:15,077 | INFO     | current chi2=0.009459878198085286 (change=23.63592559050258 %)
[2025-06-03 05:42:34] 2025-06-03 03:42:15,077 | INFO     | left removable region: 20
[2025-06-03 05:42:34] 2025-06-03 03:42:15,077 | INFO     | sum of square deviations: 130793150.0
[2025-06-03 05:42:34] 2025-06-03 03:42:15,077 | INFO     | sum of deviations: 846881544.0
[2025-06-03 05:42:34] 2025-06-03 03:42:15,077 | INFO     | mean x: 1748919472.0
[2025-06-03 05:42:34] 2025-06-03 03:42:15,077 | INFO     | mean y: 2352488.8
[2025-06-03 05:42:34] 2025-06-03 03:42:15,077 | INFO     | -- intersect: -11321846238.57238
[2025-06-03 05:42:34] 2025-06-03 03:42:15,077 | INFO     | intersect: -11321846238.57238
[2025-06-03 05:42:34] 2025-06-03 03:42:15,078 | INFO     | chi2: 0.0011541406258902432
[2025-06-03 05:42:34] 2025-06-03 03:42:15,078 | INFO     | -- intersect: -11321846238.57238
[2025-06-03 05:42:34] 2025-06-03 03:42:15,078 | INFO     | current memory leak: 6.47 B/s (using 75 data points, chi2=0.00)
[2025-06-03 05:42:34] 2025-06-03 03:42:15,078 | INFO     | ..............................
[2025-06-03 05:42:34] 2025-06-03 03:42:15,078 | INFO     | . Timing measurements:
[2025-06-03 05:42:34] 2025-06-03 03:42:15,078 | INFO     | . get job = 0 s
[2025-06-03 05:42:34] 2025-06-03 03:42:15,078 | INFO     | . initial setup = 1 s
[2025-06-03 05:42:34] 2025-06-03 03:42:15,078 | INFO     | . payload setup = 4 s
[2025-06-03 05:42:34] 2025-06-03 03:42:15,078 | INFO     | . stage-in = 0 s
[2025-06-03 05:42:34] 2025-06-03 03:42:15,078 | INFO     | . payload execution = 6133 s
[2025-06-03 05:42:34] 2025-06-03 03:42:15,078 | INFO     | . stage-out = 0 s
[2025-06-03 05:42:34] 2025-06-03 03:42:15,078 | INFO     | . log creation = 0 s
[2025-06-03 05:42:34] 2025-06-03 03:42:15,079 | INFO     | ..............................
[2025-06-03 05:42:34] 2025-06-03 03:42:15,155 | INFO     | 
[2025-06-03 05:42:34] 2025-06-03 03:42:15,155 | INFO     | job summary report
[2025-06-03 05:42:34] 2025-06-03 03:42:15,155 | INFO     | --------------------------------------------------
[2025-06-03 05:42:34] 2025-06-03 03:42:15,155 | INFO     | PanDA job id: 6677378475
[2025-06-03 05:42:34] 2025-06-03 03:42:15,155 | INFO     | task id: 45006595
[2025-06-03 05:42:34] 2025-06-03 03:42:15,155 | INFO     | errors: (none)
[2025-06-03 05:42:34] 2025-06-03 03:42:15,155 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 05:42:34] 2025-06-03 03:42:15,155 | INFO     | pilot state: finished 
[2025-06-03 05:42:34] 2025-06-03 03:42:15,155 | INFO     | transexitcode: 0
[2025-06-03 05:42:34] 2025-06-03 03:42:15,155 | INFO     | exeerrorcode: 0
[2025-06-03 05:42:34] 2025-06-03 03:42:15,155 | INFO     | exeerrordiag: 
[2025-06-03 05:42:34] 2025-06-03 03:42:15,155 | INFO     | exitcode: 0
[2025-06-03 05:42:34] 2025-06-03 03:42:15,155 | INFO     | exitmsg: OK
[2025-06-03 05:42:34] 2025-06-03 03:42:15,155 | INFO     | cpuconsumptiontime: 22935 s
[2025-06-03 05:42:34] 2025-06-03 03:42:15,155 | INFO     | nevents: 400
[2025-06-03 05:42:34] 2025-06-03 03:42:15,156 | INFO     | neventsw: 0
[2025-06-03 05:42:34] 2025-06-03 03:42:15,156 | INFO     | pid: 769186
[2025-06-03 05:42:34] 2025-06-03 03:42:15,156 | INFO     | pgrp: 769186
[2025-06-03 05:42:34] 2025-06-03 03:42:15,156 | INFO     | corecount: 4
[2025-06-03 05:42:34] 2025-06-03 03:42:15,156 | INFO     | event service: False
[2025-06-03 05:42:34] 2025-06-03 03:42:15,156 | INFO     | sizes: {0: 2405006, 1: 2405205, 3: 2405411, 11: 2405439, 6140: 2432184, 6141: 2441127, 6143: 2441311, 6147: 2441481}
[2025-06-03 05:42:34] 2025-06-03 03:42:15,156 | INFO     | --------------------------------------------------
[2025-06-03 05:42:34] 2025-06-03 03:42:15,156 | INFO     | 
[2025-06-03 05:42:34] 2025-06-03 03:42:15,156 | INFO     | executing command: ls -lF /var/lib/boinc4/slots/0
[2025-06-03 05:42:34] 2025-06-03 03:42:15,171 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 05:42:34] 2025-06-03 03:42:15,172 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 05:42:34] 2025-06-03 03:42:15,172 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 05:42:34] 2025-06-03 03:42:15,172 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 05:42:34] 2025-06-03 03:42:15,172 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 05:42:34] 2025-06-03 03:42:15,172 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 05:42:34] 2025-06-03 03:42:15,172 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 05:42:34] 2025-06-03 03:42:15,172 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 05:42:34] 2025-06-03 03:42:15,172 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 05:42:34] 2025-06-03 03:42:15,172 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 05:42:34] 2025-06-03 03:42:15,172 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 05:42:34] 2025-06-03 03:42:15,172 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 05:42:34] 2025-06-03 03:42:15,172 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 05:42:34] 2025-06-03 03:42:15,172 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 05:42:34] 2025-06-03 03:42:15,172 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 05:42:34] 2025-06-03 03:42:15,173 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 05:42:34] 2025-06-03 03:42:15,173 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 05:42:34] 2025-06-03 03:42:15,173 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 05:42:34] 2025-06-03 03:42:15,173 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 05:42:34] 2025-06-03 03:42:15,173 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 05:42:34] 2025-06-03 03:42:15,173 | INFO     | job 6677378475 has completed (purged errors)
[2025-06-03 05:42:34] 2025-06-03 03:42:15,173 | INFO     | overall cleanup function is called
[2025-06-03 05:42:34] 2025-06-03 03:42:16,178 | INFO     | --- collectZombieJob: --- 10, [769186]
[2025-06-03 05:42:34] 2025-06-03 03:42:16,178 | INFO     | zombie collector waiting for pid 769186
[2025-06-03 05:42:34] 2025-06-03 03:42:16,178 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 05:42:34] 2025-06-03 03:42:16,178 | INFO     | collected zombie processes
[2025-06-03 05:42:34] 2025-06-03 03:42:16,178 | INFO     | will attempt to kill all subprocesses of pid=769186
[2025-06-03 05:42:34] 2025-06-03 03:42:16,281 | INFO     | process IDs to be killed: [769186] (in reverse order)
[2025-06-03 05:42:34] 2025-06-03 03:42:16,320 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 05:42:34] 2025-06-03 03:42:16,321 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 05:42:34] 2025-06-03 03:42:16,324 | INFO     | did not find any defunct processes belonging to 769186
[2025-06-03 05:42:34] 2025-06-03 03:42:16,327 | INFO     | did not find any defunct processes belonging to 769186
[2025-06-03 05:42:34] 2025-06-03 03:42:16,327 | INFO     | ready for new job
[2025-06-03 05:42:34] 2025-06-03 03:42:16,327 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 05:42:34] 2025-06-03 03:42:16,328 | INFO     | **************************************
[2025-06-03 05:42:34] 2025-06-03 03:42:16,328 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 05:42:34] 2025-06-03 03:42:16,328 | INFO     | **************************************
[2025-06-03 05:42:34] 2025-06-03 03:42:16,328 | INFO     | 
[2025-06-03 05:42:34] 2025-06-03 03:42:16,329 | INFO     | architecture information:
[2025-06-03 05:42:34] 2025-06-03 03:42:16,330 | INFO     | executing command: cat /etc/os-release
[2025-06-03 05:42:34] 2025-06-03 03:42:16,344 | INFO     | cat /etc/os-release:
[2025-06-03 05:42:34] NAME="CentOS Linux"
[2025-06-03 05:42:34] VERSION="7 (Core)"
[2025-06-03 05:42:34] ID="centos"
[2025-06-03 05:42:34] ID_LIKE="rhel fedora"
[2025-06-03 05:42:34] VERSION_ID="7"
[2025-06-03 05:42:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 05:42:34] ANSI_COLOR="0;31"
[2025-06-03 05:42:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 05:42:34] HOME_URL="https://www.centos.org/"
[2025-06-03 05:42:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 05:42:34] 
[2025-06-03 05:42:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 05:42:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 05:42:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 05:42:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 05:42:34] 
[2025-06-03 05:42:34] 2025-06-03 03:42:16,344 | INFO     | **************************************
[2025-06-03 05:42:34] 2025-06-03 03:42:16,847 | INFO     | executing command: df -mP /var/lib/boinc4/slots/0
[2025-06-03 05:42:34] 2025-06-03 03:42:16,857 | INFO     | sufficient remaining disk space (223706349568 B)
[2025-06-03 05:42:34] 2025-06-03 03:42:16,858 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 05:42:34] 2025-06-03 03:42:16,858 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 05:42:34] 2025-06-03 03:42:16,858 | INFO     | update_server=False
[2025-06-03 05:42:34] 2025-06-03 03:42:16,858 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 05:42:34] 2025-06-03 03:42:16,858 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 05:42:34] 2025-06-03 03:42:16,955 | INFO     | all data control threads have been joined
[2025-06-03 05:42:34] 2025-06-03 03:42:17,114 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 05:42:34] 2025-06-03 03:42:17,289 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 05:42:34] 2025-06-03 03:42:17,289 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 05:42:34] 2025-06-03 03:42:17,289 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 05:42:34] 2025-06-03 03:42:17,301 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-03 05:42:34] 2025-06-03 03:42:17,301 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-03 05:42:34] 2025-06-03 03:42:17,301 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 05:42:34] 2025-06-03 03:42:17,301 | INFO     | will abort loop
[2025-06-03 05:42:34] 2025-06-03 03:42:17,416 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 05:42:34] 2025-06-03 03:42:17,863 | INFO     | [job] retrieve thread has finished
[2025-06-03 05:42:34] 2025-06-03 03:42:17,863 | INFO     | [job] queue monitor thread has finished
[2025-06-03 05:42:34] 2025-06-03 03:42:17,917 | INFO     | all payload control threads have been joined
[2025-06-03 05:42:34] 2025-06-03 03:42:17,933 | INFO     | all job control threads have been joined
[2025-06-03 05:42:34] 2025-06-03 03:42:17,960 | INFO     | [data] control thread has finished
[2025-06-03 05:42:34] 2025-06-03 03:42:18,092 | INFO     | [data] copytool_in thread has finished
[2025-06-03 05:42:34] 2025-06-03 03:42:18,306 | INFO     | [job] job monitor thread has finished
[2025-06-03 05:42:34] 2025-06-03 03:42:18,409 | INFO     | [job] validate thread has finished
[2025-06-03 05:42:34] 2025-06-03 03:42:18,414 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 05:42:34] 2025-06-03 03:42:18,476 | INFO     | [payload] failed_post thread has finished
[2025-06-03 05:42:34] 2025-06-03 03:42:18,518 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 05:42:34] 2025-06-03 03:42:18,712 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 05:42:34] 2025-06-03 03:42:18,921 | INFO     | [payload] control thread has finished
[2025-06-03 05:42:34] 2025-06-03 03:42:18,938 | INFO     | [job] control thread has finished
[2025-06-03 05:42:34] 2025-06-03 03:42:19,119 | INFO     | [data] copytool_out thread has finished
[2025-06-03 05:42:34] 2025-06-03 03:42:19,186 | INFO     | [payload] validate_post thread has finished
[2025-06-03 05:42:34] 2025-06-03 03:42:21,422 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 05:42:34] 2025-06-03 03:42:27,433 | INFO     | job.realtimelogging is not enabled
[2025-06-03 05:42:34] 2025-06-03 03:42:28,438 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 05:42:34] 2025-06-03 03:42:28,884 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 125937148651328)>', '<ExcThread(monitor, started 125936661935872)>']
[2025-06-03 05:42:34] 2025-06-03 03:42:29,342 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 05:42:34] 2025-06-03 03:42:29,342 | INFO     | [monitor] control thread has ended
[2025-06-03 05:42:34] 2025-06-03 03:42:33,910 | INFO     | all workflow threads have been joined
[2025-06-03 05:42:34] 2025-06-03 03:42:33,910 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 05:42:34] 2025-06-03 03:42:33,910 | INFO     | traces error code: 0
[2025-06-03 05:42:34] 2025-06-03 03:42:33,910 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 05:42:34] 2025-06-03 03:42:33,984 [wrapper] ==== pilot stdout END ====
[2025-06-03 05:42:34] 2025-06-03 03:42:33,986 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 05:42:34] 2025-06-03 03:42:33,988 [wrapper] pilotpid: 762599
[2025-06-03 05:42:34] 2025-06-03 03:42:33,990 [wrapper] Pilot exit status: 0
[2025-06-03 05:42:34] 2025-06-03 03:42:33,996 [wrapper] pandaids: 6677378475
[2025-06-03 05:42:34] 2025-06-03 03:42:34,023 [wrapper] cleanup supervisor_pilot  853838 762600
[2025-06-03 05:42:34] 2025-06-03 03:42:34,025 [wrapper] Test setup, not cleaning
[2025-06-03 05:42:34] 2025-06-03 03:42:34,027 [wrapper] apfmon messages muted
[2025-06-03 05:42:34] 2025-06-03 03:42:34,028 [wrapper] ==== wrapper stdout END ====
[2025-06-03 05:42:34] 2025-06-03 03:42:34,030 [wrapper] ==== wrapper stderr END ====
[2025-06-03 05:42:34]  *** Error codes and diagnostics ***
[2025-06-03 05:42:34]     "exeErrorCode": 0,
[2025-06-03 05:42:34]     "exeErrorDiag": "",
[2025-06-03 05:42:34]     "pilotErrorCode": 0,
[2025-06-03 05:42:34]     "pilotErrorDiag": "",
[2025-06-03 05:42:34]  *** Listing of results directory ***
[2025-06-03 05:42:34] insgesamt 387120
[2025-06-03 05:42:34] -rw-r--r-- 1 boinc boinc    495897  2. Jun 17:48 pilot3.tar.gz
[2025-06-03 05:42:34] -rwx------ 1 boinc boinc     37140  2. Jun 17:49 runpilot2-wrapper.sh
[2025-06-03 05:42:34] -rw-r--r-- 1 boinc boinc      5111  2. Jun 17:49 queuedata.json
[2025-06-03 05:42:34] -rw-r--r-- 1 boinc boinc       100  3. Jun 03:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 05:42:34] -rwxr-xr-x 1 boinc boinc      7986  3. Jun 03:59 run_atlas
[2025-06-03 05:42:34] -rw-r--r-- 1 boinc boinc       105  3. Jun 03:59 job.xml
[2025-06-03 05:42:34] -rw-r--r-- 2 boinc boinc     15093  3. Jun 03:59 start_atlas.sh
[2025-06-03 05:42:34] drwxrwx--x 2 boinc boinc      4096  3. Jun 03:59 shared
[2025-06-03 05:42:34] -rw-r--r-- 2 boinc boinc    508870  3. Jun 03:59 input.tar.gz
[2025-06-03 05:42:34] -rw-r--r-- 1 boinc boinc      6965  3. Jun 03:59 init_data.xml
[2025-06-03 05:42:34] -rw-r--r-- 2 boinc boinc 214745963  3. Jun 03:59 EVNT.45006593._000048.pool.root.1
[2025-06-03 05:42:34] -rw-r--r-- 1 boinc boinc         0  3. Jun 03:59 boinc_lockfile
[2025-06-03 05:42:34] -rw-r--r-- 1 boinc boinc      2521  3. Jun 03:59 pandaJob.out
[2025-06-03 05:42:34] -rw------- 1 boinc boinc    988081  3. Jun 03:59 agis_schedconf.cvmfs.json
[2025-06-03 05:42:34] -rw------- 1 boinc boinc   1603667  3. Jun 03:59 agis_ddmendpoints.agis.ALL.json
[2025-06-03 05:42:34] drwx------ 4 boinc boinc      4096  3. Jun 03:59 pilot3
[2025-06-03 05:42:34] -rw------- 1 boinc boinc        95  3. Jun 05:41 pilot_heartbeat.json
[2025-06-03 05:42:34] -rw------- 1 boinc boinc 176120149  3. Jun 05:41 HITS.45006595._001182.pool.root.1
[2025-06-03 05:42:34] -rw------- 1 boinc boinc      1017  3. Jun 05:42 memory_monitor_summary.json
[2025-06-03 05:42:34] -rw------- 1 boinc boinc    248291  3. Jun 05:42 log.45006595._001182.job.log.tgz.1
[2025-06-03 05:42:34] -rw------- 1 boinc boinc      7635  3. Jun 05:42 heartbeat.json
[2025-06-03 05:42:34] -rw-r--r-- 1 boinc boinc       529  3. Jun 05:42 boinc_task_state.xml
[2025-06-03 05:42:34] -rw-r--r-- 1 boinc boinc      8192  3. Jun 05:42 boinc_mmap_file
[2025-06-03 05:42:34] -rw-r--r-- 1 boinc boinc        27  3. Jun 05:42 wrapper_checkpoint.txt
[2025-06-03 05:42:34] -rw------- 1 boinc boinc      4613  3. Jun 05:42 pilotlog.txt
[2025-06-03 05:42:34] -rw------- 1 boinc boinc    602130  3. Jun 05:42 log.45006595._001182.job.log.1
[2025-06-03 05:42:34] -rw------- 1 boinc boinc       357  3. Jun 05:42 output.list
[2025-06-03 05:42:34] -rw-r--r-- 1 boinc boinc       620  3. Jun 05:42 runtime_log
[2025-06-03 05:42:34] -rw------- 1 boinc boinc    870400  3. Jun 05:42 result.tar.gz
[2025-06-03 05:42:34] -rw------- 1 boinc boinc       642  3. Jun 05:42 UplNDmtaMg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm30eKDmnrTKkn.diag
[2025-06-03 05:42:34] -rw-r--r-- 1 boinc boinc      8628  3. Jun 05:42 runtime_log.err
[2025-06-03 05:42:34] -rw-r--r-- 1 boinc boinc     20691  3. Jun 05:42 stderr.txt
[2025-06-03 05:42:34] HITS file was successfully produced:
[2025-06-03 05:42:34] -rw------- 1 boinc boinc 176120149  3. Jun 05:41 shared/HITS.pool.root.1
[2025-06-03 05:42:34]  *** Contents of shared directory: ***
[2025-06-03 05:42:34] insgesamt 383084
[2025-06-03 05:42:34] -rw-r--r-- 2 boinc boinc     15093  3. Jun 03:59 start_atlas.sh
[2025-06-03 05:42:34] -rw-r--r-- 2 boinc boinc    508870  3. Jun 03:59 input.tar.gz
[2025-06-03 05:42:34] -rw-r--r-- 2 boinc boinc 214745963  3. Jun 03:59 ATLAS.root_0
[2025-06-03 05:42:34] -rw------- 1 boinc boinc 176120149  3. Jun 05:41 HITS.pool.root.1
[2025-06-03 05:42:34] -rw------- 1 boinc boinc    870400  3. Jun 05:42 result.tar.gz
05:42:35 (756874): run_atlas exited; CPU time 22998.978541
05:42:35 (756874): called boinc_finish(0)

</stderr_txt>
]]>

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