Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:11:24 (9520): wrapper (7.7.26015): starting
08:11:24 (9520): wrapper: running run_atlas (--nthreads 12)
[2025-02-26 08:11:24] Arguments: --nthreads 12
[2025-02-26 08:11:24] Threads: 12
[2025-02-26 08:11:24] Checking for CVMFS
[2025-02-26 08:11:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-02-26 08:11:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-02-26 08:11:25] Running cvmfs_config stat atlas.cern.ch
[2025-02-26 08:11:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-02-26 08:11:25] 2.11.2.0 13814 324542 146996 143075 2 1 17313220 20275200 1 130560 0 24783344 99.945 8656886 40967 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-02-26 08:11:25] CVMFS is ok
[2025-02-26 08:11:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-26 08:11:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-26 08:11:25] Further information can be found at the LHC@home message board.
[2025-02-26 08:11:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-26 08:11:25] Checking for apptainer binary...
[2025-02-26 08:11:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-02-26 08:11:25] Running /usr/bin/apptainer --version
[2025-02-26 08:11:25] apptainer version 1.3.2-1.el7
[2025-02-26 08:11:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-26 08:11:26] c-205-7.aglt2.org
[2025-02-26 08:11:26] apptainer works
[2025-02-26 08:11:26] Set ATHENA_PROC_NUMBER=12
[2025-02-26 08:11:26] Set ATHENA_CORE_NUMBER=12
[2025-02-26 08:11:26] Starting ATLAS job with PandaID=6531026320
[2025-02-26 08:11:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-26 09:32:57]  *** The last 200 lines of the pilot log: ***
[2025-02-26 09:32:57]  status_code=0
[2025-02-26 09:32:57]  storage_token=
[2025-02-26 09:32:57]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6531026320/log.43401137._002273.job.log.tgz.1
[2025-02-26 09:32:57]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d6/ef/log.43401137._002273.job.log.tgz.1
[2025-02-26 09:32:57]  workdir=None
[2025-02-26 09:32:57] ]
[2025-02-26 09:32:57] 2025-02-26 14:32:40,235 | INFO     | transferring file log.43401137._002273.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6531026320/log.43401137._002273.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-02-26 09:32:57] 2025-02-26 14:32:40,235 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6531026320/log.43401137._002273.job.log.tgz.1 /tmp/boinchome/slots/0/log.43401137._002273.job
[2025-02-26 09:32:57] 2025-02-26 14:32:40,259 | INFO     | adding to output.list: log.43401137._002273.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d6/ef/log.43401137._002273.job.log.tg
[2025-02-26 09:32:57] 2025-02-26 14:32:40,260 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-02-26 09:32:57] 2025-02-26 14:32:40,260 | INFO     | summary of transferred files:
[2025-02-26 09:32:57] 2025-02-26 14:32:40,260 | INFO     |  -- lfn=log.43401137._002273.job.log.tgz.1, status_code=0, status=transferred
[2025-02-26 09:32:57] 2025-02-26 14:32:40,260 | INFO     | stage-out finished correctly
[2025-02-26 09:32:57] 2025-02-26 14:32:40,346 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-02-26 09:32:57] 2025-02-26 14:32:40,429 | INFO     | job 6531026320 has state=finished
[2025-02-26 09:32:57] 2025-02-26 14:32:40,429 | INFO     | preparing for final server update for job 6531026320 in state='finished'
[2025-02-26 09:32:57] 2025-02-26 14:32:40,430 | INFO     | this job has now completed (state=finished)
[2025-02-26 09:32:57] 2025-02-26 14:32:40,430 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-02-26 09:32:57] 2025-02-26 14:32:40,430 | INFO     | log transfer has been attempted: DONE
[2025-02-26 09:32:57] 2025-02-26 14:32:40,430 | INFO     | job 6531026320 has finished - writing final server update
[2025-02-26 09:32:57] 2025-02-26 14:32:40,431 | INFO     | total number of processed events: 400 (read)
[2025-02-26 09:32:57] 2025-02-26 14:32:40,441 | INFO     | executing command: lscpu
[2025-02-26 09:32:57] 2025-02-26 14:32:40,467 | INFO     | found 12 cores (6 cores per socket, 2 sockets)
[2025-02-26 09:32:57] 2025-02-26 14:32:40,481 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-02-26 09:32:57] 2025-02-26 14:32:40,724 | INFO     | PID=13202 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-02-26 09:32:57] 2025-02-26 14:32:45,524 | INFO     | CPU arch script returned: x86-64-v2
[2025-02-26 09:32:57] 2025-02-26 14:32:45,558 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6531026320/memory_monitor_summary.json (trf name=prmon)
[2025-02-26 09:32:57] 2025-02-26 14:32:45,559 | INFO     | extracted standard info from prmon json
[2025-02-26 09:32:57] 2025-02-26 14:32:45,560 | INFO     | extracted standard memory fields from prmon json
[2025-02-26 09:32:57] 2025-02-26 14:32:45,560 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-02-26 09:32:57] 2025-02-26 14:32:45,560 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-02-26 09:32:57] 2025-02-26 14:32:45,560 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-02-26 09:32:57] 2025-02-26 14:32:45,562 | INFO     | fitting pss+swap vs Time
[2025-02-26 09:32:57] 2025-02-26 14:32:45,562 | INFO     | model: linear, x: [1740575836.0, 1740575897.0, 1740575958.0, 1740576019.0, 1740576080.0, 1740576141.0, 1740576202.0, 1740576263.0, 1740576324.0, 1740576385.0, 1740
[2025-02-26 09:32:57] 2025-02-26 14:32:45,562 | INFO     | sum of square deviations: 120605052.0
[2025-02-26 09:32:57] 2025-02-26 14:32:45,563 | INFO     | sum of deviations: 27075499345.0
[2025-02-26 09:32:57] 2025-02-26 14:32:45,563 | INFO     | mean x: 1740578032.0
[2025-02-26 09:32:57] 2025-02-26 14:32:45,563 | INFO     | mean y: 2599049.02739726
[2025-02-26 09:32:57] 2025-02-26 14:32:45,563 | INFO     | -- intersect: -390752336866.40497
[2025-02-26 09:32:57] 2025-02-26 14:32:45,563 | INFO     | intersect: -390752336866.40497
[2025-02-26 09:32:57] 2025-02-26 14:32:45,563 | INFO     | chi2: 2.7198752587136807
[2025-02-26 09:32:57] 2025-02-26 14:32:45,564 | INFO     | -- intersect: -390752336866.40497
[2025-02-26 09:32:57] 2025-02-26 14:32:45,564 | INFO     | current memory leak: 224.50 B/s (using 73 data points, chi2=2.72)
[2025-02-26 09:32:57] 2025-02-26 14:32:45,564 | INFO     | ..............................
[2025-02-26 09:32:57] 2025-02-26 14:32:45,564 | INFO     | . Timing measurements:
[2025-02-26 09:32:57] 2025-02-26 14:32:45,564 | INFO     | . get job = 0 s
[2025-02-26 09:32:57] 2025-02-26 14:32:45,564 | INFO     | . initial setup = 2 s
[2025-02-26 09:32:57] 2025-02-26 14:32:45,565 | INFO     | . payload setup = 7 s
[2025-02-26 09:32:57] 2025-02-26 14:32:45,565 | INFO     | . stage-in = 0 s
[2025-02-26 09:32:57] 2025-02-26 14:32:45,565 | INFO     | . payload execution = 4830 s
[2025-02-26 09:32:57] 2025-02-26 14:32:45,565 | INFO     | . stage-out = 0 s
[2025-02-26 09:32:57] 2025-02-26 14:32:45,565 | INFO     | . log creation = 0 s
[2025-02-26 09:32:57] 2025-02-26 14:32:45,565 | INFO     | ..............................
[2025-02-26 09:32:57] 2025-02-26 14:32:45,604 | WARNING  | process 19655 can no longer be monitored (due to stat problems) - aborting
[2025-02-26 09:32:57] 2025-02-26 14:32:45,609 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6531026320/memory_monitor_summary.json (trf name=prmon)
[2025-02-26 09:32:57] 2025-02-26 14:32:45,620 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6531026320/memory_monitor_summary.json (trf name=prmon)
[2025-02-26 09:32:57] 2025-02-26 14:32:45,657 | INFO     | 
[2025-02-26 09:32:57] 2025-02-26 14:32:45,657 | INFO     | job summary report
[2025-02-26 09:32:57] 2025-02-26 14:32:45,657 | INFO     | --------------------------------------------------
[2025-02-26 09:32:57] 2025-02-26 14:32:45,657 | INFO     | PanDA job id: 6531026320
[2025-02-26 09:32:57] 2025-02-26 14:32:45,657 | INFO     | task id: 43401137
[2025-02-26 09:32:57] 2025-02-26 14:32:45,657 | INFO     | errors: (none)
[2025-02-26 09:32:57] 2025-02-26 14:32:45,657 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-26 09:32:57] 2025-02-26 14:32:45,658 | INFO     | pilot state: finished 
[2025-02-26 09:32:57] 2025-02-26 14:32:45,658 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3798443 B
[2025-02-26 09:32:57] 2025-02-26 14:32:45,658 | INFO     | transexitcode: 0
[2025-02-26 09:32:57] 2025-02-26 14:32:45,658 | INFO     | exeerrorcode: 0
[2025-02-26 09:32:57] 2025-02-26 14:32:45,658 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16014 B
[2025-02-26 09:32:57] 2025-02-26 14:32:45,658 | INFO     | exeerrordiag: 
[2025-02-26 09:32:57] 2025-02-26 14:32:45,661 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-02-26 09:32:57] 2025-02-26 14:32:45,662 | INFO     | exitcode: 0
[2025-02-26 09:32:57] 2025-02-26 14:32:45,668 | INFO     | exitmsg: OK
[2025-02-26 09:32:57] 2025-02-26 14:32:45,669 | INFO     | cpuconsumptiontime: 46463 s
[2025-02-26 09:32:57] 2025-02-26 14:32:45,669 | INFO     | nevents: 400
[2025-02-26 09:32:57] 2025-02-26 14:32:45,669 | INFO     | neventsw: 0
[2025-02-26 09:32:57] 2025-02-26 14:32:45,669 | INFO     | pid: 19655
[2025-02-26 09:32:57] 2025-02-26 14:32:45,669 | INFO     | pgrp: 19655
[2025-02-26 09:32:57] 2025-02-26 14:32:45,669 | INFO     | corecount: 12
[2025-02-26 09:32:57] 2025-02-26 14:32:45,670 | INFO     | event service: False
[2025-02-26 09:32:57] 2025-02-26 14:32:45,670 | INFO     | sizes: {0: 2363607, 1: 2363806, 6: 2364012, 11: 2364040, 4842: 2399006, 4843: 2399006, 4848: 2399304}
[2025-02-26 09:32:57] 2025-02-26 14:32:45,670 | INFO     | --------------------------------------------------
[2025-02-26 09:32:57] 2025-02-26 14:32:45,670 | INFO     | 
[2025-02-26 09:32:57] 2025-02-26 14:32:45,671 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-02-26 09:32:57] 2025-02-26 14:32:45,683 | INFO     | sufficient remaining disk space (29355933696 B)
[2025-02-26 09:32:57] 2025-02-26 14:32:45,683 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-02-26 09:32:57] 2025-02-26 14:32:45,685 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6531026320: 4098574 B (within 2537553920 B limit)
[2025-02-26 09:32:57] 2025-02-26 14:32:45,685 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6531026320/HITS.43401137._002273.pool.root.1 does not exist (skip from workdir size calculation)
[2025-02-26 09:32:57] 2025-02-26 14:32:45,685 | INFO     | total size of present files: 0 B (workdir size: 4098574 B)
[2025-02-26 09:32:57] 2025-02-26 14:32:45,686 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6531026320/HITS.43401137._002273.pool.root.1 since it does not exist
[2025-02-26 09:32:57] 2025-02-26 14:32:45,696 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-26 09:32:57] 2025-02-26 14:32:45,696 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-26 09:32:57] 2025-02-26 14:32:45,696 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-26 09:32:57] 2025-02-26 14:32:45,696 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-26 09:32:57] 2025-02-26 14:32:45,697 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-26 09:32:57] 2025-02-26 14:32:45,697 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-26 09:32:57] 2025-02-26 14:32:45,697 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-26 09:32:57] 2025-02-26 14:32:45,697 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-26 09:32:57] 2025-02-26 14:32:45,697 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-26 09:32:57] 2025-02-26 14:32:45,697 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-26 09:32:57] 2025-02-26 14:32:45,698 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-26 09:32:57] 2025-02-26 14:32:45,698 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-26 09:32:57] 2025-02-26 14:32:45,698 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-26 09:32:57] 2025-02-26 14:32:45,698 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-26 09:32:57] 2025-02-26 14:32:45,698 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-26 09:32:57] 2025-02-26 14:32:45,699 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-26 09:32:57] 2025-02-26 14:32:45,699 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-26 09:32:57] 2025-02-26 14:32:45,699 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-26 09:32:57] 2025-02-26 14:32:45,699 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-26 09:32:57] 2025-02-26 14:32:45,699 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-26 09:32:57] 2025-02-26 14:32:45,700 | INFO     | job 6531026320 has completed (purged errors)
[2025-02-26 09:32:57] 2025-02-26 14:32:45,700 | INFO     | overall cleanup function is called
[2025-02-26 09:32:57] 2025-02-26 14:32:45,736 | INFO     | 4866s have passed since pilot start
[2025-02-26 09:32:57] 2025-02-26 14:32:45,745 | INFO     | number of running child processes to parent process 19655: 1
[2025-02-26 09:32:57] 2025-02-26 14:32:45,746 | INFO     | maximum number of monitored processes: 6
[2025-02-26 09:32:57] 2025-02-26 14:32:45,746 | INFO     | aborting job monitoring since job object (job id=6531026320) has expired
[2025-02-26 09:32:57] 2025-02-26 14:32:46,707 | INFO     | --- collectZombieJob: --- 10, [19655]
[2025-02-26 09:32:57] 2025-02-26 14:32:46,707 | INFO     | zombie collector waiting for pid 19655
[2025-02-26 09:32:57] 2025-02-26 14:32:46,707 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-26 09:32:57] 2025-02-26 14:32:46,707 | INFO     | collected zombie processes
[2025-02-26 09:32:57] 2025-02-26 14:32:46,707 | INFO     | will attempt to kill all subprocesses of pid=19655
[2025-02-26 09:32:57] 2025-02-26 14:32:46,769 | INFO     | process IDs to be killed: [19655] (in reverse order)
[2025-02-26 09:32:57] 2025-02-26 14:32:46,820 | WARNING  | found no corresponding commands to process id(s)
[2025-02-26 09:32:57] 2025-02-26 14:32:46,820 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-26 09:32:57] 2025-02-26 14:32:46,824 | INFO     | did not find any defunct processes belonging to 19655
[2025-02-26 09:32:57] 2025-02-26 14:32:46,827 | INFO     | did not find any defunct processes belonging to 19655
[2025-02-26 09:32:57] 2025-02-26 14:32:46,827 | INFO     | ready for new job
[2025-02-26 09:32:57] 2025-02-26 14:32:46,828 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-26 09:32:57] 2025-02-26 14:32:46,829 | INFO     | **************************************
[2025-02-26 09:32:57] 2025-02-26 14:32:46,829 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-26 09:32:57] 2025-02-26 14:32:46,829 | INFO     | **************************************
[2025-02-26 09:32:57] 2025-02-26 14:32:46,829 | INFO     | 
[2025-02-26 09:32:57] 2025-02-26 14:32:46,830 | INFO     | architecture information:
[2025-02-26 09:32:57] 2025-02-26 14:32:46,831 | INFO     | executing command: cat /etc/os-release
[2025-02-26 09:32:57] 2025-02-26 14:32:46,845 | INFO     | cat /etc/os-release:
[2025-02-26 09:32:57] NAME="CentOS Linux"
[2025-02-26 09:32:57] VERSION="7 (Core)"
[2025-02-26 09:32:57] ID="centos"
[2025-02-26 09:32:57] ID_LIKE="rhel fedora"
[2025-02-26 09:32:57] VERSION_ID="7"
[2025-02-26 09:32:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-26 09:32:57] ANSI_COLOR="0;31"
[2025-02-26 09:32:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-26 09:32:57] HOME_URL="https://www.centos.org/"
[2025-02-26 09:32:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-26 09:32:57] 
[2025-02-26 09:32:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-26 09:32:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-26 09:32:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-26 09:32:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-26 09:32:57] 
[2025-02-26 09:32:57] 2025-02-26 14:32:46,845 | INFO     | **************************************
[2025-02-26 09:32:57] 2025-02-26 14:32:47,348 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-02-26 09:32:57] 2025-02-26 14:32:47,365 | INFO     | sufficient remaining disk space (29360128000 B)
[2025-02-26 09:32:57] 2025-02-26 14:32:47,365 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-26 09:32:57] 2025-02-26 14:32:47,365 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-26 09:32:57] 2025-02-26 14:32:47,366 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-26 09:32:57] 2025-02-26 14:32:47,366 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-02-26 09:32:57] 2025-02-26 14:32:47,367 | INFO     | found 0 job(s) in 20 queues
[2025-02-26 09:32:57] 2025-02-26 14:32:47,367 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-26 09:32:57] 2025-02-26 14:32:47,367 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-26 09:32:57] 2025-02-26 14:32:47,367 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-26 09:32:57] 2025-02-26 14:32:47,367 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-26 09:32:57] 2025-02-26 14:32:47,368 | INFO     | aborting loop
[2025-02-26 09:32:57] 2025-02-26 14:32:48,358 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-26 09:32:57] 2025-02-26 14:32:48,371 | INFO     | [job] retrieve thread has finished
[2025-02-26 09:32:57] 2025-02-26 14:32:48,372 | INFO     | [job] queue monitor thread has finished
[2025-02-26 09:32:57] 2025-02-26 14:32:48,373 | INFO     | [job] job monitor thread has finished
[2025-02-26 09:32:57] 2025-02-26 14:32:48,433 | INFO     | all job control threads have been joined
[2025-02-26 09:32:57] 2025-02-26 14:32:48,455 | INFO     | [data] copytool_in thread has finished
[2025-02-26 09:32:57] 2025-02-26 14:32:48,460 | INFO     | all data control threads have been joined
[2025-02-26 09:32:57] 2025-02-26 14:32:48,506 | INFO     | [payload] validate_post thread has finished
[2025-02-26 09:32:57] 2025-02-26 14:32:48,571 | INFO     | all payload control threads have been joined
[2025-02-26 09:32:57] 2025-02-26 14:32:48,653 | INFO     | [payload] failed_post thread has finished
[2025-02-26 09:32:57] 2025-02-26 14:32:49,201 | INFO     | [job] validate thread has finished
[2025-02-26 09:32:57] 2025-02-26 14:32:49,399 | INFO     | [job] create_data_payload thread has finished
[2025-02-26 09:32:57] 2025-02-26 14:32:49,406 | INFO     | [payload] validate_pre thread has finished
[2025-02-26 09:32:57] 2025-02-26 14:32:49,430 | INFO     | [payload] execute_payloads thread has finished
[2025-02-26 09:32:57] 2025-02-26 14:32:49,436 | INFO     | [job] control thread has finished
[2025-02-26 09:32:57] 2025-02-26 14:32:49,463 | INFO     | [data] control thread has finished
[2025-02-26 09:32:57] 2025-02-26 14:32:49,576 | INFO     | [payload] control thread has finished
[2025-02-26 09:32:57] 2025-02-26 14:32:49,817 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-26 09:32:57] 2025-02-26 14:32:50,364 | INFO     | [data] copytool_out thread has finished
[2025-02-26 09:32:57] 2025-02-26 14:32:51,372 | INFO     | [data] queue_monitor thread has finished
[2025-02-26 09:32:57] 2025-02-26 14:32:51,677 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140531858151232)>', '<ExcThread(monitor, started 140530902091520)>']
[2025-02-26 09:32:57] 2025-02-26 14:32:52,383 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-26 09:32:57] 2025-02-26 14:32:52,384 | INFO     | [monitor] control thread has ended
[2025-02-26 09:32:57] 2025-02-26 14:32:56,703 | INFO     | all workflow threads have been joined
[2025-02-26 09:32:57] 2025-02-26 14:32:56,703 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-26 09:32:57] 2025-02-26 14:32:56,703 | INFO     | traces error code: 0
[2025-02-26 09:32:57] 2025-02-26 14:32:56,704 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-26 09:32:57] 2025-02-26 14:32:56,813 [wrapper] ==== pilot stdout END ====
[2025-02-26 09:32:57] 2025-02-26 14:32:56,817 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-26 09:32:57] 2025-02-26 14:32:56,820 [wrapper] pilotpid: 13202
[2025-02-26 09:32:57] 2025-02-26 14:32:56,824 [wrapper] Pilot exit status: 0
[2025-02-26 09:32:57] 2025-02-26 14:32:56,838 [wrapper] pandaids: 6531026320
[2025-02-26 09:32:57] 2025-02-26 14:32:56,877 [wrapper] cleanup supervisor_pilot  4320 13203
[2025-02-26 09:32:57] 2025-02-26 14:32:56,881 [wrapper] Test setup, not cleaning
[2025-02-26 09:32:57] 2025-02-26 14:32:56,889 [wrapper] apfmon messages muted
[2025-02-26 09:32:57] 2025-02-26 14:32:56,892 [wrapper] ==== wrapper stdout END ====
[2025-02-26 09:32:57] 2025-02-26 14:32:56,896 [wrapper] ==== wrapper stderr END ====
[2025-02-26 09:32:57]  *** Error codes and diagnostics ***
[2025-02-26 09:32:57]     "exeErrorCode": 0,
[2025-02-26 09:32:57]     "exeErrorDiag": "",
[2025-02-26 09:32:57]     "pilotErrorCode": 0,
[2025-02-26 09:32:57]     "pilotErrorDiag": "",
[2025-02-26 09:32:57]  *** Listing of results directory ***
[2025-02-26 09:32:57] total 432616
[2025-02-26 09:32:57] -rw-r--r-- 1 boincer umatlas    491065 Feb 25 16:07 pilot3.tar.gz
[2025-02-26 09:32:57] -rw-r--r-- 1 boincer umatlas      5118 Feb 25 16:51 queuedata.json
[2025-02-26 09:32:57] -rwx------ 1 boincer umatlas     35865 Feb 25 16:52 runpilot2-wrapper.sh
[2025-02-26 09:32:57] -rw-r--r-- 1 boincer umatlas       100 Feb 26 08:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-26 09:32:57] -rwxr-xr-x 1 boincer umatlas      7986 Feb 26 08:11 run_atlas
[2025-02-26 09:32:57] -rw-r--r-- 1 boincer umatlas       105 Feb 26 08:11 job.xml
[2025-02-26 09:32:57] -rw-r--r-- 2 boincer umatlas 250331539 Feb 26 08:11 EVNT.43401135._000078.pool.root.1
[2025-02-26 09:32:57] -rw-r--r-- 2 boincer umatlas     17569 Feb 26 08:11 start_atlas.sh
[2025-02-26 09:32:57] drwxrwx--x 2 boincer umatlas      4096 Feb 26 08:11 shared
[2025-02-26 09:32:57] -rw-r--r-- 2 boincer umatlas    503560 Feb 26 08:11 input.tar.gz
[2025-02-26 09:32:57] -rw-r--r-- 1 boincer umatlas         0 Feb 26 08:11 boinc_lockfile
[2025-02-26 09:32:57] -rw-r--r-- 1 boincer umatlas      2555 Feb 26 08:11 pandaJob.out
[2025-02-26 09:32:57] -rw------- 1 boincer umatlas       424 Feb 26 08:11 setup.sh.local
[2025-02-26 09:32:57] -rw------- 1 boincer umatlas    990220 Feb 26 08:11 agis_schedconf.cvmfs.json
[2025-02-26 09:32:57] -rw------- 1 boincer umatlas   1569202 Feb 26 08:11 agis_ddmendpoints.agis.ALL.json
[2025-02-26 09:32:57] drwx------ 4 boincer umatlas      4096 Feb 26 08:11 pilot3
[2025-02-26 09:32:57] -rw-r--r-- 1 boincer umatlas      5867 Feb 26 09:29 init_data.xml
[2025-02-26 09:32:57] -rw------- 1 boincer umatlas 187252073 Feb 26 09:32 HITS.43401137._002273.pool.root.1
[2025-02-26 09:32:57] -rw-r--r-- 1 boincer umatlas        27 Feb 26 09:32 wrapper_checkpoint.txt
[2025-02-26 09:32:57] -rw-r--r-- 1 boincer umatlas       529 Feb 26 09:32 boinc_task_state.xml
[2025-02-26 09:32:57] -rw------- 1 boincer umatlas      1043 Feb 26 09:32 memory_monitor_summary.json
[2025-02-26 09:32:57] -rw------- 1 boincer umatlas    353405 Feb 26 09:32 log.43401137._002273.job.log.tgz.1
[2025-02-26 09:32:57] -rw------- 1 boincer umatlas        95 Feb 26 09:32 pilot_heartbeat.json
[2025-02-26 09:32:57] -rw------- 1 boincer umatlas      7768 Feb 26 09:32 heartbeat.json
[2025-02-26 09:32:57] -rw------- 1 boincer umatlas      4338 Feb 26 09:32 pilotlog.txt
[2025-02-26 09:32:57] -rw-r--r-- 1 boincer umatlas      8192 Feb 26 09:32 boinc_mmap_file
[2025-02-26 09:32:57] -rw------- 1 boincer umatlas    456421 Feb 26 09:32 log.43401137._002273.job.log.1
[2025-02-26 09:32:57] -rw------- 1 boincer umatlas       357 Feb 26 09:32 output.list
[2025-02-26 09:32:57] -rw-r--r-- 1 boincer umatlas       620 Feb 26 09:32 runtime_log
[2025-02-26 09:32:57] -rw------- 1 boincer umatlas    829440 Feb 26 09:32 result.tar.gz
[2025-02-26 09:32:57] -rw------- 1 boincer umatlas       658 Feb 26 09:32 yaxMDmN2H76n9Rq4apOajLDm4fhM0noT9bVoFjIUDmDMgKDm54qsAo.diag
[2025-02-26 09:32:57] -rw-r--r-- 1 boincer umatlas     11010 Feb 26 09:32 runtime_log.err
[2025-02-26 09:32:57] -rw-r--r-- 1 boincer umatlas     22519 Feb 26 09:32 stderr.txt
[2025-02-26 09:32:57] HITS file was successfully produced:
[2025-02-26 09:32:57] -rw------- 1 boincer umatlas 187252073 Feb 26 09:32 shared/HITS.pool.root.1
[2025-02-26 09:32:57]  *** Contents of shared directory: ***
[2025-02-26 09:32:57] total 428660
[2025-02-26 09:32:57] -rw-r--r-- 2 boincer umatlas 250331539 Feb 26 08:11 ATLAS.root_0
[2025-02-26 09:32:57] -rw-r--r-- 2 boincer umatlas     17569 Feb 26 08:11 start_atlas.sh
[2025-02-26 09:32:57] -rw-r--r-- 2 boincer umatlas    503560 Feb 26 08:11 input.tar.gz
[2025-02-26 09:32:57] -rw------- 1 boincer umatlas 187252073 Feb 26 09:32 HITS.pool.root.1
[2025-02-26 09:32:57] -rw------- 1 boincer umatlas    829440 Feb 26 09:32 result.tar.gz
09:32:59 (9520): run_atlas exited; CPU time 46401.888258
09:32:59 (9520): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN