Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-26 09:57:25 (148688): Detected: vboxwrapper 26206
2025-02-26 09:57:25 (148688): Detected: BOINC client v8.0.2
2025-02-26 09:57:26 (148688): Detected: VirtualBox VboxManage Interface (Version: 7.0.14)
2025-02-26 09:57:26 (148688): Successfully copied 'init_data.xml' to the shared directory.
2025-02-26 09:57:27 (148688): Create VM. (boinc_e42c1b7f759196f5, slot#5)
2025-02-26 09:57:28 (148688): Setting Memory Size for VM. (8000MB)
2025-02-26 09:57:28 (148688): Setting CPU Count for VM. (5)
2025-02-26 09:57:28 (148688): Setting Chipset Options for VM.
2025-02-26 09:57:28 (148688): Setting Graphics Controller Options for VM.
2025-02-26 09:57:29 (148688): Setting Boot Options for VM.
2025-02-26 09:57:29 (148688): Setting Network Configuration for NAT.
2025-02-26 09:57:29 (148688): Enabling VM Network Access.
2025-02-26 09:57:29 (148688): Disabling USB Support for VM.
2025-02-26 09:57:30 (148688): Disabling COM Port Support for VM.
2025-02-26 09:57:30 (148688): Disabling LPT Port Support for VM.
2025-02-26 09:57:30 (148688): Disabling Audio Support for VM.
2025-02-26 09:57:31 (148688): Disabling Clipboard Support for VM.
2025-02-26 09:57:31 (148688): Disabling Drag and Drop Support for VM.
2025-02-26 09:57:31 (148688): Adding storage controller(s) to VM.
2025-02-26 09:57:31 (148688): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-26 09:57:34 (148688): Adding VirtualBox Guest Additions to VM.
2025-02-26 09:57:35 (148688): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-26 09:57:35 (148688): forwarding host port 58822 to guest port 80
2025-02-26 09:57:35 (148688): Enabling remote desktop for VM.
2025-02-26 09:57:36 (148688): Enabling shared directory for VM.
2025-02-26 09:57:37 (148688): Starting VM using VBoxManage interface. (boinc_e42c1b7f759196f5, slot#5)
2025-02-26 09:57:45 (148688): Successfully started VM. (PID = '149040')
2025-02-26 09:57:45 (148688): Reporting VM Process ID to BOINC.
2025-02-26 09:57:45 (148688): Guest Log: BIOS: VirtualBox 7.0.14
2025-02-26 09:57:45 (148688): Guest Log: CPUID EDX: 0x178bfbff
2025-02-26 09:57:45 (148688): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-26 09:57:45 (148688): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-26 09:57:45 (148688): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-26 09:57:45 (148688): Detected: Web Application Enabled (http://localhost:58822)
2025-02-26 09:57:45 (148688): Detected: Remote Desktop Enabled (localhost:58823)
2025-02-26 09:57:45 (148688): Preference change detected
2025-02-26 09:57:45 (148688): Setting CPU throttle for VM. (100%)
2025-02-26 09:57:45 (148688): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-26 09:57:47 (148688): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-26 09:57:47 (148688): Guest Log: BIOS: Booting from Hard Disk...
2025-02-26 09:57:50 (148688): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-26 09:57:50 (148688): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-26 09:57:50 (148688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-26 09:57:50 (148688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-26 09:57:50 (148688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-26 09:57:50 (148688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-26 09:57:50 (148688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-26 09:57:50 (148688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-26 09:57:50 (148688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-26 09:57:50 (148688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-26 09:57:50 (148688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-26 09:57:50 (148688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-26 09:57:50 (148688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-26 09:57:50 (148688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-26 09:57:50 (148688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-26 09:57:50 (148688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-26 09:57:50 (148688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-26 09:57:50 (148688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-26 09:57:50 (148688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-26 09:57:50 (148688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-26 09:57:50 (148688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-26 09:57:50 (148688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-26 09:57:50 (148688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-26 09:57:50 (148688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-26 09:57:50 (148688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-26 09:57:50 (148688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-26 09:57:50 (148688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-26 09:57:50 (148688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-26 09:57:50 (148688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-26 09:57:50 (148688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-26 09:57:50 (148688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-26 09:57:50 (148688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-26 09:58:03 (148688): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-26 09:58:03 (148688): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-26 09:58:44 (148688): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-26 09:58:44 (148688): Guest Log: 00:00:00.000158 main     Log opened 2025-02-26T09:58:42.172711000Z
2025-02-26 09:58:44 (148688): Guest Log: 00:00:00.000258 main     OS Product: Linux
2025-02-26 09:58:44 (148688): Guest Log: 00:00:00.000288 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-26 09:58:44 (148688): Guest Log: 00:00:00.000308 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-26 09:58:44 (148688): Guest Log: 00:00:00.000328 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-26 09:58:44 (148688): Guest Log: 00:00:00.000329 main     Process ID: 1434
2025-02-26 09:58:44 (148688): Guest Log: 00:00:00.000329 main     Package type: LINUX_64BITS_GENERIC
2025-02-26 09:58:44 (148688): Guest Log: 00:00:00.001121 main     5.2.32 r132073 started. Verbose level = 0
2025-02-26 09:58:44 (148688): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-26 09:58:44 (148688): Guest Log: [INFO] Mounting shared directory
2025-02-26 09:58:44 (148688): Guest Log: [INFO] Checking for init_data.xml
2025-02-26 09:58:50 (148688): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-26 09:58:50 (148688): Guest Log: [INFO] Detected branch: prod
2025-02-26 09:58:50 (148688): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-26 09:58:50 (148688): Guest Log: Copying input files
2025-02-26 09:58:51 (148688): Guest Log: Copied input files into RunAtlas.
2025-02-26 09:58:51 (148688): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-26 09:58:51 (148688): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-26 09:58:51 (148688): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-26 09:58:51 (148688): Guest Log: Further information can be found at the LHC@home message board.
2025-02-26 09:58:54 (148688): Guest Log: 00:00:10.002954 timesync vgsvcTimeSyncWorker: Radical guest time change: 28 811 678 816 000ns (GuestNow=1 740 592 733 853 609 000 ns GuestLast=1 740 563 922 174 793 000 ns fSetTimeLastLoop=true )
2025-02-26 09:59:01 (148688): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-26 09:59:01 (148688): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-26 09:59:01 (148688): Guest Log: 2.6.3.0 1711 0 30128 143077 4 1 3117305 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-02-26 09:59:07 (148688): Guest Log: copied the webapp to /var/www
2025-02-26 09:59:07 (148688): Guest Log: ATHENA_PROC_NUMBER=5
2025-02-26 09:59:07 (148688): Guest Log: ATHENA_CORE_NUMBER=5
2025-02-26 09:59:07 (148688): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-26 09:59:07 (148688): Guest Log:  *** Starting ATLAS job. (PandaID=6531079543 taskID=43401171) ***
2025-02-26 10:28:21 (148688): VM state change detected. (old = 'running', new = 'paused')
2025-02-26 10:50:30 (148688): VM state change detected. (old = 'paused', new = 'running')
2025-02-26 11:21:08 (148688): VM state change detected. (old = 'running', new = 'paused')
2025-02-26 11:39:03 (148688): VM state change detected. (old = 'paused', new = 'running')
2025-02-26 12:09:25 (148688): VM state change detected. (old = 'running', new = 'paused')
2025-02-26 12:28:58 (148688): VM state change detected. (old = 'paused', new = 'running')
2025-02-26 12:29:12 (148688): Guest Log: 01:30:51.822023 timesync vgsvcTimeSyncWorker: Radical guest time change: 2 257 447 019 000ns (GuestNow=1 740 601 751 663 992 000 ns GuestLast=1 740 599 494 216 973 000 ns fSetTimeLastLoop=true )
2025-02-26 12:40:41 (148688): Status Report: Elapsed Time: '6000.428688'
2025-02-26 12:40:41 (148688): Status Report: CPU Time: '25139.515625'
2025-02-26 12:59:39 (148688): VM state change detected. (old = 'running', new = 'paused')
2025-02-26 13:20:23 (148688): VM state change detected. (old = 'paused', new = 'running')
2025-02-26 13:26:58 (148688): Guest Log:  *** Job finished ***
2025-02-26 13:26:58 (148688): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-26 13:26:58 (148688): Guest Log: 2025-02-26 21:26:45,295 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-02-26 13:26:58 (148688): Guest Log: 2025-02-26 21:26:46,311 | INFO     | [job] queue monitor thread has finished
2025-02-26 13:26:58 (148688): Guest Log: 2025-02-26 21:26:49,351 | INFO     | [data] queue_monitor thread has finished
2025-02-26 13:26:58 (148688): Guest Log: 2025-02-26 21:26:49,963 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139670274897728)>', '<ExcThread(monitor, started 139669685647104)>']
2025-02-26 13:26:58 (148688): Guest Log: 2025-02-26 21:26:50,629 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-26 13:26:58 (148688): Guest Log: 2025-02-26 21:26:50,630 | INFO     | [monitor] control thread has ended
2025-02-26 13:26:58 (148688): Guest Log: 2025-02-26 21:26:54,976 | INFO     | all workflow threads have been joined
2025-02-26 13:26:58 (148688): Guest Log: 2025-02-26 21:26:54,977 | INFO     | end of generic workflow (traces error code: 0)
2025-02-26 13:26:58 (148688): Guest Log: 2025-02-26 21:26:54,977 | INFO     | traces error code: 0
2025-02-26 13:26:58 (148688): Guest Log: 2025-02-26 21:26:54,977 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-26 13:26:58 (148688): Guest Log: 2025-02-26 21:26:55,066 [wrapper] ==== pilot stdout END ====
2025-02-26 13:26:58 (148688): Guest Log: 2025-02-26 21:26:55,072 [wrapper] ==== wrapper stdout RESUME ====
2025-02-26 13:26:58 (148688): Guest Log: 2025-02-26 21:26:55,077 [wrapper] pilotpid: 6038
2025-02-26 13:26:58 (148688): Guest Log: 2025-02-26 21:26:55,083 [wrapper] Pilot exit status: 0
2025-02-26 13:26:58 (148688): Guest Log: 2025-02-26 21:26:55,604 [wrapper] pandaids: 6531079543
2025-02-26 13:26:58 (148688): Guest Log: 2025-02-26 21:26:55,637 [wrapper] cleanup supervisor_pilot  5843 6039
2025-02-26 13:26:58 (148688): Guest Log: 2025-02-26 21:26:55,646 [wrapper] Test setup, not cleaning
2025-02-26 13:26:58 (148688): Guest Log: 2025-02-26 21:26:55,657 [wrapper] apfmon messages muted
2025-02-26 13:26:58 (148688): Guest Log: 2025-02-26 21:26:55,663 [wrapper] ==== wrapper stdout END ====
2025-02-26 13:26:58 (148688): Guest Log: 2025-02-26 21:26:55,669 [wrapper] ==== wrapper stderr END ====
2025-02-26 13:26:58 (148688): Guest Log:  *** Error codes and diagnostics ***
2025-02-26 13:26:58 (148688): Guest Log:     "exeErrorCode": 0,
2025-02-26 13:26:58 (148688): Guest Log:     "exeErrorDiag": "",
2025-02-26 13:26:58 (148688): Guest Log:     "pilotErrorCode": 0,
2025-02-26 13:26:58 (148688): Guest Log:     "pilotErrorDiag": "",
2025-02-26 13:26:58 (148688): Guest Log:  *** Listing of results directory ***
2025-02-26 13:26:58 (148688): Guest Log: total 196460
2025-02-26 13:26:58 (148688): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb 25 22:35 pilot3.tar.gz
2025-02-26 13:26:58 (148688): Guest Log: -rwx------. 1 atlas atlas     35865 Feb 25 22:38 runpilot2-wrapper.sh
2025-02-26 13:26:58 (148688): Guest Log: -rw-r--r--. 1 atlas atlas      5118 Feb 25 22:38 queuedata.json
2025-02-26 13:26:58 (148688): Guest Log: -rwxr-xr-x. 1 atlas atlas      9395 Feb 26 17:58 init_data.xml
2025-02-26 13:26:58 (148688): Guest Log: -rwxr-xr-x. 1 atlas atlas    503560 Feb 26 17:58 input.tar.gz
2025-02-26 13:26:58 (148688): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb 26 17:58 start_atlas.sh
2025-02-26 13:26:58 (148688): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 26 17:58 EVNT.43401169._000083.pool.root.1 -> /data/./ATLAS.root_0
2025-02-26 13:26:58 (148688): Guest Log: -rw-r--r--. 1 atlas atlas      2542 Feb 26 17:59 pandaJob.out
2025-02-26 13:26:58 (148688): Guest Log: -rw-------. 1 atlas atlas       424 Feb 26 17:59 setup.sh.local
2025-02-26 13:26:58 (148688): Guest Log: -rw-------. 1 atlas atlas    990575 Feb 26 18:00 agis_schedconf.cvmfs.json
2025-02-26 13:26:58 (148688): Guest Log: drwx------. 4 atlas atlas      4096 Feb 26 18:00 pilot3
2025-02-26 13:26:58 (148688): Guest Log: -rw-------. 1 atlas atlas 195607351 Feb 26 21:26 HITS.43401171._002090.pool.root.1
2025-02-26 13:26:58 (148688): Guest Log: -rw-------. 1 atlas atlas      1036 Feb 26 21:26 memory_monitor_summary.json
2025-02-26 13:26:58 (148688): Guest Log: -rw-------. 1 atlas atlas        97 Feb 26 21:26 pilot_heartbeat.json
2025-02-26 13:26:58 (148688): Guest Log: -rw-------. 1 atlas atlas   1569202 Feb 26 21:26 agis_ddmendpoints.agis.ALL.json
2025-02-26 13:26:58 (148688): Guest Log: -rw-------. 1 atlas atlas    291815 Feb 26 21:26 log.43401171._002090.job.log.tgz.1
2025-02-26 13:26:58 (148688): Guest Log: -rw-------. 1 atlas atlas      7754 Feb 26 21:26 heartbeat.json
2025-02-26 13:26:58 (148688): Guest Log: -rw-------. 1 atlas atlas      4398 Feb 26 21:26 pilotlog.txt
2025-02-26 13:26:58 (148688): Guest Log: -rw-------. 1 atlas atlas    628450 Feb 26 21:26 log.43401171._002090.job.log.1
2025-02-26 13:26:58 (148688): Guest Log: -rw-------. 1 atlas atlas       357 Feb 26 21:26 output.list
2025-02-26 13:26:58 (148688): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb 26 21:26 runtime_log
2025-02-26 13:26:58 (148688): Guest Log: -rw-------. 1 atlas atlas    942080 Feb 26 21:26 result.tar.gz
2025-02-26 13:26:58 (148688): Guest Log: -rw-------. 1 atlas atlas       659 Feb 26 21:26 WqMNDmRkI76n9Rq4apOajLDm4fhM0noT9bVoFjIUDm6dgKDmeo2Uqm.diag
2025-02-26 13:26:58 (148688): Guest Log: -rw-r--r--. 1 atlas atlas     10945 Feb 26 21:26 runtime_log.err
2025-02-26 13:26:58 (148688): Guest Log: Looking for outputfile HITS.43401171._002090.pool.root.1
2025-02-26 13:26:58 (148688): Guest Log: HITS file was successfully produced
2025-02-26 13:26:58 (148688): Guest Log: -rw-------. 1 atlas atlas 195607351 Feb 26 21:26 /home/atlas/RunAtlas/HITS.43401171._002090.pool.root.1
2025-02-26 13:27:00 (148688): Guest Log: Successfully finished the ATLAS job!
2025-02-26 13:27:00 (148688): Guest Log: Copying the results back to the shared directory!
2025-02-26 13:27:00 (148688): Guest Log:  *** Contents of shared directory: ***
2025-02-26 13:27:00 (148688): Guest Log: total 437820
2025-02-26 13:27:00 (148688): Guest Log: -rwxrwxrwx. 1 root root 251236392 Feb 26 17:57 ATLAS.root_0
2025-02-26 13:27:00 (148688): Guest Log: -rwxrwxrwx. 1 root root 195607351 Feb 26 21:26 HITS.pool.root.1
2025-02-26 13:27:00 (148688): Guest Log: -rwxrwxrwx. 1 root root      9395 Feb 26 17:57 init_data.xml
2025-02-26 13:27:00 (148688): Guest Log: -rwxrwxrwx. 1 root root    503560 Feb 26 03:11 input.tar.gz
2025-02-26 13:27:00 (148688): Guest Log: -rwxrwxrwx. 1 root root    942080 Feb 26 21:26 result.tar.gz
2025-02-26 13:27:00 (148688): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 26 03:11 start_atlas.sh
2025-02-26 13:27:00 (148688): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-26 13:27:00 (148688): VM Completion File Detected.
2025-02-26 13:27:00 (148688): Powering off VM.
2025-02-26 13:27:02 (148688): Successfully stopped VM.
2025-02-26 13:27:02 (148688): Deregistering VM. (boinc_e42c1b7f759196f5, slot#5)
2025-02-26 13:27:02 (148688): Removing network bandwidth throttle group from VM.
2025-02-26 13:27:03 (148688): Removing VM from VirtualBox.
13:27:08 (148688): called boinc_finish(0)

</stderr_txt>
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