Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-26 05:58:04 (118388): Detected: vboxwrapper 26206
2025-02-26 05:58:04 (118388): Detected: BOINC client v8.0.2
2025-02-26 05:58:06 (118388): Detected: VirtualBox VboxManage Interface (Version: 7.0.14)
2025-02-26 05:58:06 (118388): Successfully copied 'init_data.xml' to the shared directory.
2025-02-26 05:58:06 (118388): Create VM. (boinc_a859c57423328b7d, slot#5)
2025-02-26 05:58:07 (118388): Setting Memory Size for VM. (8000MB)
2025-02-26 05:58:07 (118388): Setting CPU Count for VM. (5)
2025-02-26 05:58:07 (118388): Setting Chipset Options for VM.
2025-02-26 05:58:08 (118388): Setting Graphics Controller Options for VM.
2025-02-26 05:58:08 (118388): Setting Boot Options for VM.
2025-02-26 05:58:08 (118388): Setting Network Configuration for NAT.
2025-02-26 05:58:09 (118388): Enabling VM Network Access.
2025-02-26 05:58:09 (118388): Disabling USB Support for VM.
2025-02-26 05:58:09 (118388): Disabling COM Port Support for VM.
2025-02-26 05:58:09 (118388): Disabling LPT Port Support for VM.
2025-02-26 05:58:10 (118388): Disabling Audio Support for VM.
2025-02-26 05:58:10 (118388): Disabling Clipboard Support for VM.
2025-02-26 05:58:10 (118388): Disabling Drag and Drop Support for VM.
2025-02-26 05:58:10 (118388): Adding storage controller(s) to VM.
2025-02-26 05:58:11 (118388): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-26 05:58:15 (118388): Adding VirtualBox Guest Additions to VM.
2025-02-26 05:58:15 (118388): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-26 05:58:15 (118388): forwarding host port 56387 to guest port 80
2025-02-26 05:58:15 (118388): Enabling remote desktop for VM.
2025-02-26 05:58:16 (118388): Enabling shared directory for VM.
2025-02-26 05:58:17 (118388): Starting VM using VBoxManage interface. (boinc_a859c57423328b7d, slot#5)
2025-02-26 05:58:24 (118388): Successfully started VM. (PID = '108064')
2025-02-26 05:58:24 (118388): Reporting VM Process ID to BOINC.
2025-02-26 05:58:24 (118388): Guest Log: BIOS: VirtualBox 7.0.14
2025-02-26 05:58:24 (118388): Guest Log: CPUID EDX: 0x178bfbff
2025-02-26 05:58:24 (118388): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-26 05:58:24 (118388): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-26 05:58:24 (118388): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-26 05:58:24 (118388): Detected: Web Application Enabled (http://localhost:56387)
2025-02-26 05:58:24 (118388): Detected: Remote Desktop Enabled (localhost:56388)
2025-02-26 05:58:24 (118388): Preference change detected
2025-02-26 05:58:24 (118388): Setting CPU throttle for VM. (100%)
2025-02-26 05:58:25 (118388): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-26 05:58:26 (118388): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-26 05:58:26 (118388): Guest Log: BIOS: Booting from Hard Disk...
2025-02-26 05:58:29 (118388): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-26 05:58:29 (118388): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-26 05:58:29 (118388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-26 05:58:29 (118388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-26 05:58:29 (118388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-26 05:58:29 (118388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-26 05:58:29 (118388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-26 05:58:29 (118388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-26 05:58:29 (118388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-26 05:58:29 (118388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-26 05:58:29 (118388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-26 05:58:29 (118388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-26 05:58:29 (118388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-26 05:58:29 (118388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-26 05:58:29 (118388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-26 05:58:29 (118388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-26 05:58:29 (118388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-26 05:58:29 (118388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-26 05:58:29 (118388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-26 05:58:29 (118388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-26 05:58:29 (118388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-26 05:58:29 (118388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-26 05:58:29 (118388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-26 05:58:29 (118388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-26 05:58:29 (118388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-26 05:58:29 (118388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-26 05:58:29 (118388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-26 05:58:29 (118388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-26 05:58:29 (118388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-26 05:58:29 (118388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-26 05:58:29 (118388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-26 05:58:29 (118388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-26 05:58:39 (118388): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-26 05:58:39 (118388): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-26 05:59:20 (118388): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-26 05:59:20 (118388): Guest Log: 00:00:00.000440 main     Log opened 2025-02-26T05:59:18.542472000Z
2025-02-26 05:59:20 (118388): Guest Log: 00:00:00.000557 main     OS Product: Linux
2025-02-26 05:59:20 (118388): Guest Log: 00:00:00.000615 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-26 05:59:20 (118388): Guest Log: 00:00:00.000639 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-26 05:59:20 (118388): Guest Log: 00:00:00.000675 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-26 05:59:20 (118388): Guest Log: 00:00:00.000676 main     Process ID: 1451
2025-02-26 05:59:20 (118388): Guest Log: 00:00:00.000676 main     Package type: LINUX_64BITS_GENERIC
2025-02-26 05:59:20 (118388): Guest Log: 00:00:00.001455 main     5.2.32 r132073 started. Verbose level = 0
2025-02-26 05:59:21 (118388): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-26 05:59:21 (118388): Guest Log: [INFO] Mounting shared directory
2025-02-26 05:59:21 (118388): Guest Log: [INFO] Checking for init_data.xml
2025-02-26 05:59:26 (118388): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-26 05:59:26 (118388): Guest Log: [INFO] Detected branch: prod
2025-02-26 05:59:26 (118388): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-26 05:59:26 (118388): Guest Log: Copying input files
2025-02-26 05:59:28 (118388): Guest Log: Copied input files into RunAtlas.
2025-02-26 05:59:28 (118388): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-26 05:59:28 (118388): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-26 05:59:28 (118388): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-26 05:59:28 (118388): Guest Log: Further information can be found at the LHC@home message board.
2025-02-26 05:59:30 (118388): Guest Log: 00:00:10.002813 timesync vgsvcTimeSyncWorker: Radical guest time change: 28 811 617 559 000ns (GuestNow=1 740 578 370 162 142 000 ns GuestLast=1 740 549 558 544 583 000 ns fSetTimeLastLoop=true )
2025-02-26 05:59:38 (118388): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-26 05:59:38 (118388): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-26 05:59:38 (118388): Guest Log: 2.6.3.0 1729 0 30152 143076 3 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-02-26 05:59:47 (118388): Guest Log: copied the webapp to /var/www
2025-02-26 05:59:47 (118388): Guest Log: ATHENA_PROC_NUMBER=5
2025-02-26 05:59:47 (118388): Guest Log: ATHENA_CORE_NUMBER=5
2025-02-26 05:59:49 (118388): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-26 05:59:49 (118388): Guest Log:  *** Starting ATLAS job. (PandaID=6531064568 taskID=43401155) ***
2025-02-26 06:28:21 (118388): VM state change detected. (old = 'running', new = 'paused')
2025-02-26 06:47:45 (118388): VM state change detected. (old = 'paused', new = 'running')
2025-02-26 07:17:58 (118388): VM state change detected. (old = 'running', new = 'paused')
2025-02-26 07:42:06 (118388): VM state change detected. (old = 'paused', new = 'running')
2025-02-26 07:42:23 (118388): Guest Log: 00:59:31.974126 timesync vgsvcTimeSyncWorker: Radical guest time change: 2 620 697 491 000ns (GuestNow=1 740 584 542 826 028 000 ns GuestLast=1 740 581 922 128 537 000 ns fSetTimeLastLoop=true )
2025-02-26 08:13:05 (118388): VM state change detected. (old = 'running', new = 'paused')
2025-02-26 08:36:31 (118388): VM state change detected. (old = 'paused', new = 'running')
2025-02-26 08:47:04 (118388): Status Report: Elapsed Time: '6000.000000'
2025-02-26 08:47:04 (118388): Status Report: CPU Time: '20727.781250'
2025-02-26 09:07:09 (118388): VM state change detected. (old = 'running', new = 'paused')
2025-02-26 09:34:03 (118388): VM state change detected. (old = 'paused', new = 'running')
2025-02-26 09:46:43 (118388): Guest Log:  *** Job finished ***
2025-02-26 09:46:43 (118388): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-26 09:46:43 (118388): Guest Log: 2025-02-26 17:46:31,410 | INFO     | [payload] execute_payloads thread has finished
2025-02-26 09:46:43 (118388): Guest Log: 2025-02-26 17:46:31,906 | INFO     | [data] copytool_out thread has finished
2025-02-26 09:46:43 (118388): Guest Log: 2025-02-26 17:46:35,421 | INFO     | [data] queue_monitor thread has finished
2025-02-26 09:46:43 (118388): Guest Log: 2025-02-26 17:46:36,731 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140001817122624)>', '<ExcThread(monitor, started 140001304114944)>']
2025-02-26 09:46:43 (118388): Guest Log: 2025-02-26 17:46:37,539 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-26 09:46:43 (118388): Guest Log: 2025-02-26 17:46:37,540 | INFO     | [monitor] control thread has ended
2025-02-26 09:46:43 (118388): Guest Log: 2025-02-26 17:46:41,740 | INFO     | all workflow threads have been joined
2025-02-26 09:46:43 (118388): Guest Log: 2025-02-26 17:46:41,740 | INFO     | end of generic workflow (traces error code: 0)
2025-02-26 09:46:43 (118388): Guest Log: 2025-02-26 17:46:41,741 | INFO     | traces error code: 0
2025-02-26 09:46:43 (118388): Guest Log: 2025-02-26 17:46:41,741 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-26 09:46:43 (118388): Guest Log: 2025-02-26 17:46:41,843 [wrapper] ==== pilot stdout END ====
2025-02-26 09:46:43 (118388): Guest Log: 2025-02-26 17:46:41,850 [wrapper] ==== wrapper stdout RESUME ====
2025-02-26 09:46:43 (118388): Guest Log: 2025-02-26 17:46:41,855 [wrapper] pilotpid: 6137
2025-02-26 09:46:43 (118388): Guest Log: 2025-02-26 17:46:41,862 [wrapper] Pilot exit status: 0
2025-02-26 09:46:43 (118388): Guest Log: 2025-02-26 17:46:42,614 [wrapper] pandaids: 6531064568
2025-02-26 09:46:43 (118388): Guest Log: 2025-02-26 17:46:42,655 [wrapper] cleanup supervisor_pilot  8400 6138
2025-02-26 09:46:43 (118388): Guest Log: 2025-02-26 17:46:42,661 [wrapper] Test setup, not cleaning
2025-02-26 09:46:43 (118388): Guest Log: 2025-02-26 17:46:42,674 [wrapper] apfmon messages muted
2025-02-26 09:46:43 (118388): Guest Log: 2025-02-26 17:46:42,680 [wrapper] ==== wrapper stdout END ====
2025-02-26 09:46:43 (118388): Guest Log: 2025-02-26 17:46:42,687 [wrapper] ==== wrapper stderr END ====
2025-02-26 09:46:43 (118388): Guest Log:  *** Error codes and diagnostics ***
2025-02-26 09:46:43 (118388): Guest Log:     "exeErrorCode": 0,
2025-02-26 09:46:43 (118388): Guest Log:     "exeErrorDiag": "",
2025-02-26 09:46:43 (118388): Guest Log:     "pilotErrorCode": 0,
2025-02-26 09:46:43 (118388): Guest Log:     "pilotErrorDiag": "",
2025-02-26 09:46:43 (118388): Guest Log:  *** Listing of results directory ***
2025-02-26 09:46:43 (118388): Guest Log: total 190612
2025-02-26 09:46:43 (118388): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb 25 22:04 pilot3.tar.gz
2025-02-26 09:46:43 (118388): Guest Log: -rwx------. 1 atlas atlas     35865 Feb 25 22:25 runpilot2-wrapper.sh
2025-02-26 09:46:43 (118388): Guest Log: -rw-r--r--. 1 atlas atlas      5118 Feb 25 22:26 queuedata.json
2025-02-26 09:46:43 (118388): Guest Log: -rwxr-xr-x. 1 atlas atlas      9395 Feb 26 13:59 init_data.xml
2025-02-26 09:46:43 (118388): Guest Log: -rwxr-xr-x. 1 atlas atlas    503548 Feb 26 13:59 input.tar.gz
2025-02-26 09:46:43 (118388): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb 26 13:59 start_atlas.sh
2025-02-26 09:46:43 (118388): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 26 13:59 EVNT.43401153._000066.pool.root.1 -> /data/./ATLAS.root_0
2025-02-26 09:46:43 (118388): Guest Log: -rw-r--r--. 1 atlas atlas      2539 Feb 26 13:59 pandaJob.out
2025-02-26 09:46:43 (118388): Guest Log: -rw-------. 1 atlas atlas       424 Feb 26 14:01 setup.sh.local
2025-02-26 09:46:43 (118388): Guest Log: -rw-------. 1 atlas atlas    990212 Feb 26 14:05 agis_schedconf.cvmfs.json
2025-02-26 09:46:43 (118388): Guest Log: drwx------. 4 atlas atlas      4096 Feb 26 14:05 pilot3
2025-02-26 09:46:43 (118388): Guest Log: -rw-------. 1 atlas atlas 189591362 Feb 26 17:45 HITS.43401155._001648.pool.root.1
2025-02-26 09:46:43 (118388): Guest Log: -rw-------. 1 atlas atlas      1049 Feb 26 17:46 memory_monitor_summary.json
2025-02-26 09:46:43 (118388): Guest Log: -rw-------. 1 atlas atlas   1569202 Feb 26 17:46 agis_ddmendpoints.agis.ALL.json
2025-02-26 09:46:43 (118388): Guest Log: -rw-------. 1 atlas atlas    291111 Feb 26 17:46 log.43401155._001648.job.log.tgz.1
2025-02-26 09:46:43 (118388): Guest Log: -rw-------. 1 atlas atlas        97 Feb 26 17:46 pilot_heartbeat.json
2025-02-26 09:46:43 (118388): Guest Log: -rw-------. 1 atlas atlas      7757 Feb 26 17:46 heartbeat.json
2025-02-26 09:46:43 (118388): Guest Log: -rw-------. 1 atlas atlas      4275 Feb 26 17:46 pilotlog.txt
2025-02-26 09:46:43 (118388): Guest Log: -rw-------. 1 atlas atlas    644198 Feb 26 17:46 log.43401155._001648.job.log.1
2025-02-26 09:46:43 (118388): Guest Log: -rw-------. 1 atlas atlas       357 Feb 26 17:46 output.list
2025-02-26 09:46:43 (118388): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb 26 17:46 runtime_log
2025-02-26 09:46:43 (118388): Guest Log: -rw-------. 1 atlas atlas    952320 Feb 26 17:46 result.tar.gz
2025-02-26 09:46:43 (118388): Guest Log: -rw-r--r--. 1 atlas atlas     10945 Feb 26 17:46 runtime_log.err
2025-02-26 09:46:43 (118388): Guest Log: -rw-------. 1 atlas atlas       659 Feb 26 17:46 0FCMDmUXI76n9Rq4apOajLDm4fhM0noT9bVoFjIUDmqXgKDmMNmztm.diag
2025-02-26 09:46:43 (118388): Guest Log: Looking for outputfile HITS.43401155._001648.pool.root.1
2025-02-26 09:46:43 (118388): Guest Log: HITS file was successfully produced
2025-02-26 09:46:43 (118388): Guest Log: -rw-------. 1 atlas atlas 189591362 Feb 26 17:45 /home/atlas/RunAtlas/HITS.43401155._001648.pool.root.1
2025-02-26 09:46:44 (118388): Guest Log: Successfully finished the ATLAS job!
2025-02-26 09:46:44 (118388): Guest Log: Copying the results back to the shared directory!
2025-02-26 09:46:44 (118388): Guest Log:  *** Contents of shared directory: ***
2025-02-26 09:46:44 (118388): Guest Log: total 430208
2025-02-26 09:46:44 (118388): Guest Log: -rwxrwxrwx. 1 root root 249448669 Feb 26 13:58 ATLAS.root_0
2025-02-26 09:46:44 (118388): Guest Log: -rwxrwxrwx. 1 root root 189591362 Feb 26 17:46 HITS.pool.root.1
2025-02-26 09:46:44 (118388): Guest Log: -rwxrwxrwx. 1 root root      9395 Feb 26 13:58 init_data.xml
2025-02-26 09:46:44 (118388): Guest Log: -rwxrwxrwx. 1 root root    503548 Feb 26 03:10 input.tar.gz
2025-02-26 09:46:44 (118388): Guest Log: -rwxrwxrwx. 1 root root    952320 Feb 26 17:46 result.tar.gz
2025-02-26 09:46:44 (118388): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 26 03:10 start_atlas.sh
2025-02-26 09:46:44 (118388): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-26 09:46:44 (118388): VM Completion File Detected.
2025-02-26 09:46:44 (118388): Powering off VM.
2025-02-26 09:46:46 (118388): Successfully stopped VM.
2025-02-26 09:46:46 (118388): Deregistering VM. (boinc_a859c57423328b7d, slot#5)
2025-02-26 09:46:46 (118388): Removing network bandwidth throttle group from VM.
2025-02-26 09:46:46 (118388): Removing VM from VirtualBox.
09:46:52 (118388): called boinc_finish(0)

</stderr_txt>
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