| Name | 4R2NDmbXI76nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmpMxKDmjyLu0m_0 |
| Workunit | 230562562 |
| Created | 25 Feb 2025, 22:29:04 UTC |
| Sent | 25 Feb 2025, 23:43:24 UTC |
| Report deadline | 5 Mar 2025, 23:43:24 UTC |
| Received | 26 Feb 2025, 0:57:41 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 0 (0x00000000) |
| Computer ID | 10830555 |
| Run time | 1 hours 9 min 2 sec |
| CPU time | 2 hours 18 min 52 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 47.63 GFLOPS |
| Application version | ATLAS Simulation v3.01 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 2.51 GB |
| Peak swap size | 3.01 GB |
| Peak disk usage | 537.83 MB |
Stderr output
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 18:43:40 (83518): wrapper (7.7.26015): starting 18:43:40 (83518): wrapper: running run_atlas (--nthreads 8) [2025-02-25 18:43:40] Arguments: --nthreads 8 [2025-02-25 18:43:40] Threads: 8 [2025-02-25 18:43:40] Checking for CVMFS [2025-02-25 18:43:41] Probing /cvmfs/atlas.cern.ch... OK [2025-02-25 18:43:41] Probing /cvmfs/atlas-condb.cern.ch... OK [2025-02-25 18:43:41] Running cvmfs_config stat atlas.cern.ch [2025-02-25 18:43:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE [2025-02-25 18:43:42] 2.11.2.0 59010 460 135904 143056 0 401 16365414 18432001 24775 130560 235 4766779 98.175 18551462 59208 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1 [2025-02-25 18:43:42] CVMFS is ok [2025-02-25 18:43:42] Efficiency of ATLAS tasks can be improved by the following measure(s): [2025-02-25 18:43:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io. [2025-02-25 18:43:42] Further information can be found at the LHC@home message board. [2025-02-25 18:43:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 [2025-02-25 18:43:42] Checking for apptainer binary... [2025-02-25 18:43:42] Using apptainer found in PATH at /usr/bin/apptainer [2025-02-25 18:43:42] Running /usr/bin/apptainer --version [2025-02-25 18:43:42] apptainer version 1.3.2-1.el7 [2025-02-25 18:43:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname [2025-02-25 18:43:45] c-212-15.aglt2.org [2025-02-25 18:43:45] apptainer works [2025-02-25 18:43:45] Set ATHENA_PROC_NUMBER=8 [2025-02-25 18:43:45] Set ATHENA_CORE_NUMBER=8 [2025-02-25 18:43:45] Starting ATLAS job with PandaID=6531064960 [2025-02-25 18:43:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh [2025-02-25 19:52:39] *** The last 200 lines of the pilot log: *** [2025-02-25 19:52:39] File "/tmp/boinchome/slots/0/pilot3/pilot/control/data.py", line 765, in create_log [2025-02-25 19:52:39] user.remove_redundant_files(workdir, piloterrors=piloterrors, debugmode=debugmode) [2025-02-25 19:52:39] File "/tmp/boinchome/slots/0/pilot3/pilot/user/atlas/common.py", line 2118, in remove_redundant_files [2025-02-25 19:52:39] list_work_dir(workdir) [2025-02-25 19:52:39] File "/tmp/boinchome/slots/0/pilot3/pilot/user/atlas/common.py", line 2064, in list_work_dir [2025-02-25 19:52:39] _, stdout, stderr = execute(cmd) [2025-02-25 19:52:39] File "/tmp/boinchome/slots/0/pilot3/pilot/util/container.py", line 85, in execute [2025-02-25 19:52:39] process = subprocess.Popen( [2025-02-25 19:52:39] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__ [2025-02-25 19:52:39] self._execute_child(args, executable, preexec_fn, close_fds, [2025-02-25 19:52:39] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child [2025-02-25 19:52:39] raise child_exception_type(errno_num, err_msg, err_filename) [2025-02-25 19:52:39] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash' [2025-02-25 19:52:39] [2025-02-25 19:52:39] None [2025-02-25 19:52:39] exception has been put in bucket queue belonging to thread 'copytool_out' [2025-02-25 19:52:39] setting graceful stop in 10 s since there is no point in continuing [2025-02-25 19:52:39] 2025-02-26 00:50:15,617 | WARNING | thread 'copytool_out' received an exception from bucket: [Errno 107] Transport endpoint is not connected: '/bin/bash' [2025-02-25 19:52:39] 2025-02-26 00:50:16,217 | INFO | monitor loop #269: job 0:6531064960 is in state 'failed' [2025-02-25 19:52:39] 2025-02-26 00:50:16,217 | INFO | will abort job monitoring soon since job state=failed (job is still in queue) [2025-02-25 19:52:39] 2025-02-26 00:50:18,724 | INFO | monitor loop #270: job 0:6531064960 is in state 'failed' [2025-02-25 19:52:39] 2025-02-26 00:50:18,724 | INFO | will abort job monitoring soon since job state=failed (job is still in queue) [2025-02-25 19:52:39] 2025-02-26 00:50:21,227 | INFO | monitor loop #271: job 0:6531064960 is in state 'failed' [2025-02-25 19:52:39] 2025-02-26 00:50:21,227 | INFO | will abort job monitoring soon since job state=failed (job is still in queue) [2025-02-25 19:52:39] 2025-02-26 00:50:23,735 | INFO | monitor loop #272: job 0:6531064960 is in state 'failed' [2025-02-25 19:52:39] 2025-02-26 00:50:23,735 | INFO | will abort job monitoring soon since job state=failed (job is still in queue) [2025-02-25 19:52:39] 2025-02-26 00:50:24,594 | WARNING | aborting monitor loop since graceful_stop has been set (timing out remaining threads) [2025-02-25 19:52:39] 2025-02-26 00:50:24,594 | INFO | found 1 job(s) in 20 queues [2025-02-25 19:52:39] 2025-02-26 00:50:24,595 | INFO | aborting job 6531064960 [2025-02-25 19:52:39] 2025-02-26 00:50:24,595 | WARNING | could not find signal name for signal number None - using SIGTERM [2025-02-25 19:52:39] 2025-02-26 00:50:24,594 | WARNING | job:job_monitor:received graceful stop - abort after this iteration [2025-02-25 19:52:39] 2025-02-26 00:50:24,607 | INFO | will abort loop [2025-02-25 19:52:39] 2025-02-26 00:50:24,607 | WARNING | data:queue_monitoring:received graceful stop - abort after this iteration [2025-02-25 19:52:39] 2025-02-26 00:50:24,738 | WARNING | pilot monitor received instruction that args.graceful_stop has been set [2025-02-25 19:52:39] 2025-02-26 00:50:24,738 | WARNING | will wait for a maximum of 300 s for threads to finish [2025-02-25 19:52:39] 2025-02-26 00:50:25,411 | INFO | all data control threads have been joined [2025-02-25 19:52:39] 2025-02-26 00:50:25,433 | INFO | job 6531064960 has state=failed [2025-02-25 19:52:39] 2025-02-26 00:50:25,433 | INFO | preparing for final server update for job 6531064960 in state='failed' [2025-02-25 19:52:39] 2025-02-26 00:50:25,615 | INFO | [job] job monitor thread has finished [2025-02-25 19:52:39] 2025-02-26 00:50:25,745 | WARNING | job_aborted has been set - aborting pilot monitoring [2025-02-25 19:52:39] 2025-02-26 00:50:25,745 | INFO | [monitor] control thread has ended [2025-02-25 19:52:39] 2025-02-26 00:50:25,827 | INFO | all payload control threads have been joined [2025-02-25 19:52:39] 2025-02-26 00:50:25,927 | INFO | all job control threads have been joined [2025-02-25 19:52:39] 2025-02-26 00:50:25,975 | INFO | [job] create_data_payload thread has finished [2025-02-25 19:52:39] 2025-02-26 00:50:26,027 | INFO | [payload] run_realtimelog thread has finished [2025-02-25 19:52:39] 2025-02-26 00:50:26,085 | INFO | [payload] validate_pre thread has finished [2025-02-25 19:52:39] 2025-02-26 00:50:26,132 | INFO | [payload] validate_post thread has finished [2025-02-25 19:52:39] 2025-02-26 00:50:26,347 | INFO | [data] copytool_in thread has finished [2025-02-25 19:52:39] 2025-02-26 00:50:26,417 | INFO | [data] control thread has finished [2025-02-25 19:52:39] 2025-02-26 00:50:26,451 | INFO | [job] retrieve thread has finished [2025-02-25 19:52:39] 2025-02-26 00:50:26,747 | INFO | [job] validate thread has finished [2025-02-25 19:52:39] 2025-02-26 00:50:26,778 | INFO | [payload] failed_post thread has finished [2025-02-25 19:52:39] 2025-02-26 00:50:26,833 | INFO | [payload] control thread has finished [2025-02-25 19:52:39] 2025-02-26 00:50:26,933 | INFO | [job] control thread has finished [2025-02-25 19:52:39] 2025-02-26 00:50:28,617 | INFO | [data] queue_monitor thread has finished [2025-02-25 19:52:39] 2025-02-26 00:50:30,551 | INFO | [payload] execute_payloads thread has finished [2025-02-25 19:52:39] 2025-02-26 00:50:31,863 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:50:33,881 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:50:35,893 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:50:37,907 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:50:39,921 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:50:41,933 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:50:43,944 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:50:45,957 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:50:47,971 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:50:49,983 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:50:51,996 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:50:54,011 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:50:56,022 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:50:58,033 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:51:00,047 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:51:02,061 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:51:04,073 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:51:06,087 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:51:08,101 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:51:10,113 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:51:12,124 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:51:14,137 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:51:16,157 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:51:18,171 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:51:20,182 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:51:22,197 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:51:24,211 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:51:26,225 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:51:28,238 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:51:30,254 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:51:32,267 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:51:34,281 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:51:36,292 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:51:38,303 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:51:40,326 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:51:42,337 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:51:44,347 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:51:46,359 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:51:48,370 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:51:50,381 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:51:52,395 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:51:54,407 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:51:56,421 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:51:58,433 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:52:00,447 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:52:02,461 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:52:04,473 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:52:06,486 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:52:08,497 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:52:10,511 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:52:12,522 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:52:14,533 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:52:16,547 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:52:18,561 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:52:20,575 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:52:20,727 | INFO | proceeding with final server update [2025-02-25 19:52:39] 2025-02-26 00:52:20,727 | INFO | this job has now completed (state=failed) [2025-02-25 19:52:39] 2025-02-26 00:52:20,727 | INFO | pilot will not update the server (heartbeat message will be written to file) [2025-02-25 19:52:39] 2025-02-26 00:52:20,727 | INFO | log transfer has not been attempted: IN_PROGRESS [2025-02-25 19:52:39] 2025-02-26 00:52:20,727 | INFO | job 6531064960 has state 'failed' - writing heartbeat [2025-02-25 19:52:39] 2025-02-26 00:52:20,728 | INFO | payload/TRF did not report the number of read events [2025-02-25 19:52:39] 2025-02-26 00:52:20,741 | INFO | executing command: lscpu [2025-02-25 19:52:39] File "/tmp/boinchome/slots/0/pilot3/pilot/common/exception.py", line 466, in run [2025-02-25 19:52:39] self._target(**self.kwargs) [2025-02-25 19:52:39] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2641, in queue_monitor [2025-02-25 19:52:39] update_server(job, args) [2025-02-25 19:52:39] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2690, in update_server [2025-02-25 19:52:39] send_state(job, args, job.state, metadata=metadata) [2025-02-25 19:52:39] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 430, in send_state [2025-02-25 19:52:39] data = get_data_structure(job, state, args, xml=xml, metadata=metadata) [2025-02-25 19:52:39] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 757, in get_data_structure [2025-02-25 19:52:39] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present [2025-02-25 19:52:39] File "/tmp/boinchome/slots/0/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores [2025-02-25 19:52:39] ec, stdout = lscpu() [2025-02-25 19:52:39] File "/tmp/boinchome/slots/0/pilot3/pilot/util/workernode.py", line 333, in lscpu [2025-02-25 19:52:39] ec, stdout, _ = execute(cmd) [2025-02-25 19:52:39] File "/tmp/boinchome/slots/0/pilot3/pilot/util/container.py", line 85, in execute [2025-02-25 19:52:39] process = subprocess.Popen( [2025-02-25 19:52:39] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__ [2025-02-25 19:52:39] self._execute_child(args, executable, preexec_fn, close_fds, [2025-02-25 19:52:39] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child [2025-02-25 19:52:39] raise child_exception_type(errno_num, err_msg, err_filename) [2025-02-25 19:52:39] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(107, 'Transport endpoint is not connected'), <traceback object at 0x7fd914135400>) [2025-02-25 19:52:39] Traceback (most recent call last): [2025-02-25 19:52:39] File "/tmp/boinchome/slots/0/pilot3/pilot/common/exception.py", line 466, in run [2025-02-25 19:52:39] self._target(**self.kwargs) [2025-02-25 19:52:39] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2641, in queue_monitor [2025-02-25 19:52:39] update_server(job, args) [2025-02-25 19:52:39] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2690, in update_server [2025-02-25 19:52:39] send_state(job, args, job.state, metadata=metadata) [2025-02-25 19:52:39] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 430, in send_state [2025-02-25 19:52:39] data = get_data_structure(job, state, args, xml=xml, metadata=metadata) [2025-02-25 19:52:39] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 757, in get_data_structure [2025-02-25 19:52:39] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present [2025-02-25 19:52:39] File "/tmp/boinchome/slots/0/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores [2025-02-25 19:52:39] ec, stdout = lscpu() [2025-02-25 19:52:39] File "/tmp/boinchome/slots/0/pilot3/pilot/util/workernode.py", line 333, in lscpu [2025-02-25 19:52:39] ec, stdout, _ = execute(cmd) [2025-02-25 19:52:39] File "/tmp/boinchome/slots/0/pilot3/pilot/util/container.py", line 85, in execute [2025-02-25 19:52:39] process = subprocess.Popen( [2025-02-25 19:52:39] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__ [2025-02-25 19:52:39] self._execute_child(args, executable, preexec_fn, close_fds, [2025-02-25 19:52:39] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child [2025-02-25 19:52:39] raise child_exception_type(errno_num, err_msg, err_filename) [2025-02-25 19:52:39] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash' [2025-02-25 19:52:39] [2025-02-25 19:52:39] None [2025-02-25 19:52:39] exception has been put in bucket queue belonging to thread 'queue_monitor' [2025-02-25 19:52:39] setting graceful stop in 10 s since there is no point in continuing [2025-02-25 19:52:39] 2025-02-26 00:52:22,586 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:52:24,602 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:52:26,613 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:52:28,627 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:52:30,641 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140570484664128)>', '<ExcThread(queue_monitor, started 140569380648704)>'] [2025-02-25 19:52:39] 2025-02-26 00:52:32,653 | INFO | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 140570484664128)>']) [2025-02-25 19:52:39] 2025-02-26 00:52:37,683 | INFO | all workflow threads have been joined [2025-02-25 19:52:39] 2025-02-26 00:52:37,683 | INFO | end of generic workflow (traces error code: 0) [2025-02-25 19:52:39] 2025-02-26 00:52:37,683 | INFO | traces error code: 0 [2025-02-25 19:52:39] 2025-02-26 00:52:37,684 | INFO | pilot has finished (exit code=0, shell exit code=0) [2025-02-25 19:52:39] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2025-02-25 19:52:39] ==== pilot stdout END ==== [2025-02-25 19:52:39] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2025-02-25 19:52:39] ==== wrapper stdout RESUME ==== [2025-02-25 19:52:39] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2025-02-25 19:52:39] pilotpid: 1939 [2025-02-25 19:52:39] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2025-02-25 19:52:39] Pilot exit status: 135 [2025-02-25 19:52:39] ./runpilot2-wrapper.sh: line 1015: /usr/bin/cat: Transport endpoint is not connected [2025-02-25 19:52:39] ./runpilot2-wrapper.sh: line 1015: /usr/bin/cut: Transport endpoint is not connected [2025-02-25 19:52:39] ./runpilot2-wrapper.sh: line 1015: xargs: command not found [2025-02-25 19:52:39] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2025-02-25 19:52:39] pandaids: [2025-02-25 19:52:39] ./runpilot2-wrapper.sh: line 516: /usr/bin/ps: Transport endpoint is not connected [2025-02-25 19:52:39] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2025-02-25 19:52:39] No supervise_pilot CHILD process found [2025-02-25 19:52:39] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2025-02-25 19:52:39] Test setup, not cleaning [2025-02-25 19:52:39] ./runpilot2-wrapper.sh: line 534: /usr/bin/date: Transport endpoint is not connected [2025-02-25 19:52:39] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2025-02-25 19:52:39] apfmon messages muted [2025-02-25 19:52:39] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2025-02-25 19:52:39] ==== wrapper stdout END ==== [2025-02-25 19:52:39] ./runpilot2-wrapper.sh: line 10: /usr/bin/date: Transport endpoint is not connected [2025-02-25 19:52:39] ==== wrapper stderr END ==== [2025-02-25 19:52:39] *** Error codes and diagnostics *** [2025-02-25 19:52:39] *** Listing of results directory *** [2025-02-25 19:52:39] total 254556 [2025-02-25 19:52:39] -rw-r--r-- 1 boincer umatlas 491065 Feb 25 17:04 pilot3.tar.gz [2025-02-25 19:52:39] -rwx------ 1 boincer umatlas 35865 Feb 25 17:25 runpilot2-wrapper.sh [2025-02-25 19:52:39] -rw-r--r-- 1 boincer umatlas 5118 Feb 25 17:26 queuedata.json [2025-02-25 19:52:39] -rw-r--r-- 1 boincer umatlas 100 Feb 25 18:43 wrapper_26015_x86_64-pc-linux-gnu [2025-02-25 19:52:39] -rwxr-xr-x 1 boincer umatlas 7986 Feb 25 18:43 run_atlas [2025-02-25 19:52:39] -rw-r--r-- 1 boincer umatlas 105 Feb 25 18:43 job.xml [2025-02-25 19:52:39] -rw-r--r-- 2 boincer umatlas 256149590 Feb 25 18:43 EVNT.43401153._000078.pool.root.1 [2025-02-25 19:52:39] -rw-r--r-- 2 boincer umatlas 17569 Feb 25 18:43 start_atlas.sh [2025-02-25 19:52:39] drwxrwx--x 2 boincer umatlas 4096 Feb 25 18:43 shared [2025-02-25 19:52:39] -rw-r--r-- 2 boincer umatlas 503550 Feb 25 18:43 input.tar.gz [2025-02-25 19:52:39] -rw-r--r-- 1 boincer umatlas 0 Feb 25 18:43 boinc_lockfile [2025-02-25 19:52:39] -rw-r--r-- 1 boincer umatlas 2539 Feb 25 18:43 pandaJob.out [2025-02-25 19:52:39] -rw------- 1 boincer umatlas 424 Feb 25 18:43 setup.sh.local [2025-02-25 19:52:39] -rw------- 1 boincer umatlas 987490 Feb 25 18:44 agis_schedconf.cvmfs.json [2025-02-25 19:52:39] -rw------- 1 boincer umatlas 1573632 Feb 25 18:44 agis_ddmendpoints.agis.ALL.json [2025-02-25 19:52:39] drwx------ 4 boincer umatlas 4096 Feb 25 18:44 pilot3 [2025-02-25 19:52:39] -rw------- 1 boincer umatlas 899 Feb 25 19:46 heartbeat.json [2025-02-25 19:52:39] -rw-r--r-- 1 boincer umatlas 6301 Feb 25 19:48 init_data.xml [2025-02-25 19:52:39] -rw-r--r-- 1 boincer umatlas 528 Feb 25 19:50 boinc_task_state.xml [2025-02-25 19:52:39] -rw------- 1 boincer umatlas 1041 Feb 25 19:50 memory_monitor_summary.json [2025-02-25 19:52:39] drwxrwx--- 2 boincer umatlas 4096 Feb 25 19:50 PanDA_Pilot-6531064960 [2025-02-25 19:52:39] -rw------- 1 boincer umatlas 95 Feb 25 19:50 pilot_heartbeat.json [2025-02-25 19:52:39] -rw-r--r-- 1 boincer umatlas 8192 Feb 25 19:52 boinc_mmap_file [2025-02-25 19:52:39] -rw-r--r-- 1 boincer umatlas 26 Feb 25 19:52 wrapper_checkpoint.txt [2025-02-25 19:52:39] -rw------- 1 boincer umatlas 363520 Feb 25 19:52 pilotlog.txt [2025-02-25 19:52:39] -rw------- 1 boincer umatlas 388292 Feb 25 19:52 log.43401155._001935.job.log.1 [2025-02-25 19:52:39] -rw-r--r-- 1 boincer umatlas 428 Feb 25 19:52 runtime_log [2025-02-25 19:52:39] -rw------- 1 boincer umatlas 638 Feb 25 19:52 4R2NDmbXI76nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmpMxKDmjyLu0m.diag [2025-02-25 19:52:39] -rw-r--r-- 1 boincer umatlas 11303 Feb 25 19:52 runtime_log.err [2025-02-25 19:52:39] -rw-r--r-- 1 boincer umatlas 27854 Feb 25 19:52 stderr.txt [2025-02-25 19:52:39] No HITS result produced [2025-02-25 19:52:39] *** Contents of shared directory: *** [2025-02-25 19:52:39] total 250660 [2025-02-25 19:52:39] -rw-r--r-- 2 boincer umatlas 256149590 Feb 25 18:43 ATLAS.root_0 [2025-02-25 19:52:39] -rw-r--r-- 2 boincer umatlas 17569 Feb 25 18:43 start_atlas.sh [2025-02-25 19:52:39] -rw-r--r-- 2 boincer umatlas 503550 Feb 25 18:43 input.tar.gz 19:52:41 (83518): run_atlas exited; CPU time 8102.363701 19:52:41 (83518): called boinc_finish(0) </stderr_txt> <message> upload failure: <file_xfer_error> <file_name>4R2NDmbXI76nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmpMxKDmjyLu0m_0_r2066724905_ATLAS_result</file_name> <error_code>-161 (not found)</error_code> </file_xfer_error> </message> ]]>
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