Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:08:25 (23611): wrapper (7.7.26015): starting
18:08:25 (23611): wrapper: running run_atlas (--nthreads 12)
[2025-02-25 18:08:25] Arguments: --nthreads 12
[2025-02-25 18:08:25] Threads: 12
[2025-02-25 18:08:25] Checking for CVMFS
[2025-02-25 18:08:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-02-25 18:08:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-02-25 18:08:25] Running cvmfs_config stat atlas.cern.ch
[2025-02-25 18:08:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-02-25 18:08:25] 2.11.2.0 5277 293780 153248 143055 2 55 19497994 20275200 1 130560 0 25301951 99.986 7851934 41257 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-02-25 18:08:25] CVMFS is ok
[2025-02-25 18:08:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-25 18:08:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-25 18:08:25] Further information can be found at the LHC@home message board.
[2025-02-25 18:08:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-25 18:08:25] Checking for apptainer binary...
[2025-02-25 18:08:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-02-25 18:08:25] Running /usr/bin/apptainer --version
[2025-02-25 18:08:25] apptainer version 1.3.2-1.el7
[2025-02-25 18:08:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-25 18:08:27] c-205-15.aglt2.org
[2025-02-25 18:08:27] apptainer works
[2025-02-25 18:08:27] Set ATHENA_PROC_NUMBER=12
[2025-02-25 18:08:27] Set ATHENA_CORE_NUMBER=12
[2025-02-25 18:08:27] Starting ATLAS job with PandaID=6531060260
[2025-02-25 18:08:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-25 19:35:27]  *** The last 200 lines of the pilot log: ***
[2025-02-25 19:35:27]  storage_token=
[2025-02-25 19:35:27]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6531060260/log.43401155._000791.job.log.tgz.1
[2025-02-25 19:35:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3b/ca/log.43401155._000791.job.log.tgz.1
[2025-02-25 19:35:27]  workdir=None
[2025-02-25 19:35:27] ]
[2025-02-25 19:35:27] 2025-02-26 00:35:07,106 | INFO     | transferring file log.43401155._000791.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6531060260/log.43401155._000791.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-02-25 19:35:27] 2025-02-26 00:35:07,107 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6531060260/log.43401155._000791.job.log.tgz.1 /tmp/boinchome/slots/0/log.43401155._000791.job
[2025-02-25 19:35:27] 2025-02-26 00:35:07,129 | INFO     | adding to output.list: log.43401155._000791.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3b/ca/log.43401155._000791.job.log.tg
[2025-02-25 19:35:27] 2025-02-26 00:35:07,130 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-02-25 19:35:27] 2025-02-26 00:35:07,130 | INFO     | summary of transferred files:
[2025-02-25 19:35:27] 2025-02-26 00:35:07,130 | INFO     |  -- lfn=log.43401155._000791.job.log.tgz.1, status_code=0, status=transferred
[2025-02-25 19:35:27] 2025-02-26 00:35:07,130 | INFO     | stage-out finished correctly
[2025-02-25 19:35:27] 2025-02-26 00:35:07,214 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-02-25 19:35:27] 2025-02-26 00:35:07,292 | INFO     | job 6531060260 has state=finished
[2025-02-25 19:35:27] 2025-02-26 00:35:07,293 | INFO     | preparing for final server update for job 6531060260 in state='finished'
[2025-02-25 19:35:27] 2025-02-26 00:35:07,293 | INFO     | this job has now completed (state=finished)
[2025-02-25 19:35:27] 2025-02-26 00:35:07,294 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-02-25 19:35:27] 2025-02-26 00:35:07,294 | INFO     | log transfer has been attempted: DONE
[2025-02-25 19:35:27] 2025-02-26 00:35:07,294 | INFO     | job 6531060260 has finished - writing final server update
[2025-02-25 19:35:27] 2025-02-26 00:35:07,294 | INFO     | total number of processed events: 400 (read)
[2025-02-25 19:35:27] 2025-02-26 00:35:07,296 | INFO     | executing command: lscpu
[2025-02-25 19:35:27] 2025-02-26 00:35:07,322 | INFO     | found 12 cores (6 cores per socket, 2 sockets)
[2025-02-25 19:35:27] 2025-02-26 00:35:07,337 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-02-25 19:35:27] 2025-02-26 00:35:10,074 | INFO     | PID=27789 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-02-25 19:35:27] 2025-02-26 00:35:12,058 | INFO     | CPU arch script returned: x86-64-v2
[2025-02-25 19:35:27] 2025-02-26 00:35:12,059 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6531060260/memory_monitor_summary.json (trf name=prmon)
[2025-02-25 19:35:27] 2025-02-26 00:35:12,064 | INFO     | extracted standard info from prmon json
[2025-02-25 19:35:27] 2025-02-26 00:35:12,065 | INFO     | extracted standard memory fields from prmon json
[2025-02-25 19:35:27] 2025-02-26 00:35:12,065 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-02-25 19:35:27] 2025-02-26 00:35:12,066 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-02-25 19:35:27] 2025-02-26 00:35:12,066 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-02-25 19:35:27] 2025-02-26 00:35:12,069 | INFO     | fitting pss+swap vs Time
[2025-02-25 19:35:27] 2025-02-26 00:35:12,069 | INFO     | model: linear, x: [1740525254.0, 1740525315.0, 1740525376.0, 1740525437.0, 1740525498.0, 1740525559.0, 1740525620.0, 1740525681.0, 1740525742.0, 1740525803.0, 1740
[2025-02-25 19:35:27] 2025-02-26 00:35:12,069 | INFO     | sum of square deviations: 147126479.5
[2025-02-25 19:35:27] 2025-02-26 00:35:12,070 | INFO     | sum of deviations: 29469606391.5
[2025-02-25 19:35:27] 2025-02-26 00:35:12,070 | INFO     | mean x: 1740527602.5
[2025-02-25 19:35:27] 2025-02-26 00:35:12,070 | INFO     | mean y: 2577732.0897435895
[2025-02-25 19:35:27] 2025-02-26 00:35:12,070 | INFO     | -- intersect: -348627142312.39874
[2025-02-25 19:35:27] 2025-02-26 00:35:12,071 | INFO     | intersect: -348627142312.39874
[2025-02-25 19:35:27] 2025-02-26 00:35:12,071 | INFO     | chi2: 2.6785717545224026
[2025-02-25 19:35:27] 2025-02-26 00:35:12,071 | INFO     | -- intersect: -348627142312.39874
[2025-02-25 19:35:27] 2025-02-26 00:35:12,071 | INFO     | current memory leak: 200.30 B/s (using 78 data points, chi2=2.68)
[2025-02-25 19:35:27] 2025-02-26 00:35:12,071 | INFO     | ..............................
[2025-02-25 19:35:27] 2025-02-26 00:35:12,072 | INFO     | . Timing measurements:
[2025-02-25 19:35:27] 2025-02-26 00:35:12,072 | INFO     | . get job = 0 s
[2025-02-25 19:35:27] 2025-02-26 00:35:12,072 | INFO     | . initial setup = 2 s
[2025-02-25 19:35:27] 2025-02-26 00:35:12,072 | INFO     | . payload setup = 7 s
[2025-02-25 19:35:27] 2025-02-26 00:35:12,072 | INFO     | . stage-in = 0 s
[2025-02-25 19:35:27] 2025-02-26 00:35:12,072 | INFO     | . payload execution = 5159 s
[2025-02-25 19:35:27] 2025-02-26 00:35:12,072 | INFO     | . stage-out = 0 s
[2025-02-25 19:35:27] 2025-02-26 00:35:12,072 | INFO     | . log creation = 0 s
[2025-02-25 19:35:27] 2025-02-26 00:35:12,073 | INFO     | ..............................
[2025-02-25 19:35:27] 2025-02-26 00:35:12,145 | WARNING  | process 2230 can no longer be monitored (due to stat problems) - aborting
[2025-02-25 19:35:27] 2025-02-26 00:35:12,158 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6531060260/memory_monitor_summary.json (trf name=prmon)
[2025-02-25 19:35:27] 2025-02-26 00:35:12,159 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6531060260/memory_monitor_summary.json (trf name=prmon)
[2025-02-25 19:35:27] 2025-02-26 00:35:12,161 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4317042 B
[2025-02-25 19:35:27] 2025-02-26 00:35:12,161 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15771 B
[2025-02-25 19:35:27] 2025-02-26 00:35:12,161 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-02-25 19:35:27] 2025-02-26 00:35:12,177 | INFO     | sufficient remaining disk space (29350690816 B)
[2025-02-25 19:35:27] 2025-02-26 00:35:12,177 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-02-25 19:35:27] 2025-02-26 00:35:12,178 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6531060260: 4618984 B (within 2537553920 B limit)
[2025-02-25 19:35:27] 2025-02-26 00:35:12,179 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6531060260/HITS.43401155._000791.pool.root.1 does not exist (skip from workdir size calculation)
[2025-02-25 19:35:27] 2025-02-26 00:35:12,179 | INFO     | total size of present files: 0 B (workdir size: 4618984 B)
[2025-02-25 19:35:27] 2025-02-26 00:35:12,179 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6531060260/HITS.43401155._000791.pool.root.1 since it does not exist
[2025-02-25 19:35:27] 2025-02-26 00:35:12,236 | INFO     | number of running child processes to parent process 2230: 1
[2025-02-25 19:35:27] 2025-02-26 00:35:12,237 | INFO     | maximum number of monitored processes: 6
[2025-02-25 19:35:27] 2025-02-26 00:35:12,237 | INFO     | aborting job monitoring since job object (job id=6531060260) has expired
[2025-02-25 19:35:27] 2025-02-26 00:35:12,615 | INFO     | 
[2025-02-25 19:35:27] 2025-02-26 00:35:12,616 | INFO     | job summary report
[2025-02-25 19:35:27] 2025-02-26 00:35:12,616 | INFO     | --------------------------------------------------
[2025-02-25 19:35:27] 2025-02-26 00:35:12,616 | INFO     | PanDA job id: 6531060260
[2025-02-25 19:35:27] 2025-02-26 00:35:12,616 | INFO     | task id: 43401155
[2025-02-25 19:35:27] 2025-02-26 00:35:12,616 | INFO     | errors: (none)
[2025-02-25 19:35:27] 2025-02-26 00:35:12,616 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-25 19:35:27] 2025-02-26 00:35:12,617 | INFO     | pilot state: finished 
[2025-02-25 19:35:27] 2025-02-26 00:35:12,617 | INFO     | transexitcode: 0
[2025-02-25 19:35:27] 2025-02-26 00:35:12,617 | INFO     | exeerrorcode: 0
[2025-02-25 19:35:27] 2025-02-26 00:35:12,617 | INFO     | exeerrordiag: 
[2025-02-25 19:35:27] 2025-02-26 00:35:12,617 | INFO     | exitcode: 0
[2025-02-25 19:35:27] 2025-02-26 00:35:12,617 | INFO     | exitmsg: OK
[2025-02-25 19:35:27] 2025-02-26 00:35:12,618 | INFO     | cpuconsumptiontime: 48609 s
[2025-02-25 19:35:27] 2025-02-26 00:35:12,618 | INFO     | nevents: 400
[2025-02-25 19:35:27] 2025-02-26 00:35:12,618 | INFO     | neventsw: 0
[2025-02-25 19:35:27] 2025-02-26 00:35:12,618 | INFO     | pid: 2230
[2025-02-25 19:35:27] 2025-02-26 00:35:12,618 | INFO     | pgrp: 2230
[2025-02-25 19:35:27] 2025-02-26 00:35:12,618 | INFO     | corecount: 12
[2025-02-25 19:35:27] 2025-02-26 00:35:12,618 | INFO     | event service: False
[2025-02-25 19:35:27] 2025-02-26 00:35:12,618 | INFO     | sizes: {0: 2370206, 1: 2370405, 6: 2370611, 11: 2370639, 5170: 2396803, 5171: 2405928, 5176: 2406042}
[2025-02-25 19:35:27] 2025-02-26 00:35:12,618 | INFO     | --------------------------------------------------
[2025-02-25 19:35:27] 2025-02-26 00:35:12,619 | INFO     | 
[2025-02-25 19:35:27] 2025-02-26 00:35:12,619 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-02-25 19:35:27] 2025-02-26 00:35:12,641 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-25 19:35:27] 2025-02-26 00:35:12,642 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-25 19:35:27] 2025-02-26 00:35:12,642 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-25 19:35:27] 2025-02-26 00:35:12,642 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-25 19:35:27] 2025-02-26 00:35:12,642 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-25 19:35:27] 2025-02-26 00:35:12,642 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-25 19:35:27] 2025-02-26 00:35:12,643 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-25 19:35:27] 2025-02-26 00:35:12,643 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-25 19:35:27] 2025-02-26 00:35:12,643 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-25 19:35:27] 2025-02-26 00:35:12,643 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-25 19:35:27] 2025-02-26 00:35:12,643 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-25 19:35:27] 2025-02-26 00:35:12,643 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-25 19:35:27] 2025-02-26 00:35:12,643 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-25 19:35:27] 2025-02-26 00:35:12,644 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-25 19:35:27] 2025-02-26 00:35:12,644 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-25 19:35:27] 2025-02-26 00:35:12,644 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-25 19:35:27] 2025-02-26 00:35:12,644 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-25 19:35:27] 2025-02-26 00:35:12,644 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-25 19:35:27] 2025-02-26 00:35:12,645 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-25 19:35:27] 2025-02-26 00:35:12,645 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-25 19:35:27] 2025-02-26 00:35:12,645 | INFO     | job 6531060260 has completed (purged errors)
[2025-02-25 19:35:27] 2025-02-26 00:35:12,645 | INFO     | overall cleanup function is called
[2025-02-25 19:35:27] 2025-02-26 00:35:13,653 | INFO     | --- collectZombieJob: --- 10, [2230]
[2025-02-25 19:35:27] 2025-02-26 00:35:13,653 | INFO     | zombie collector waiting for pid 2230
[2025-02-25 19:35:27] 2025-02-26 00:35:13,654 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-25 19:35:27] 2025-02-26 00:35:13,654 | INFO     | collected zombie processes
[2025-02-25 19:35:27] 2025-02-26 00:35:13,654 | INFO     | will attempt to kill all subprocesses of pid=2230
[2025-02-25 19:35:27] 2025-02-26 00:35:13,716 | INFO     | process IDs to be killed: [2230] (in reverse order)
[2025-02-25 19:35:27] 2025-02-26 00:35:13,766 | WARNING  | found no corresponding commands to process id(s)
[2025-02-25 19:35:27] 2025-02-26 00:35:13,766 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-25 19:35:27] 2025-02-26 00:35:13,770 | INFO     | did not find any defunct processes belonging to 2230
[2025-02-25 19:35:27] 2025-02-26 00:35:13,772 | INFO     | did not find any defunct processes belonging to 2230
[2025-02-25 19:35:27] 2025-02-26 00:35:13,773 | INFO     | ready for new job
[2025-02-25 19:35:27] 2025-02-26 00:35:13,773 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-25 19:35:27] 2025-02-26 00:35:13,774 | INFO     | **************************************
[2025-02-25 19:35:27] 2025-02-26 00:35:13,774 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-25 19:35:27] 2025-02-26 00:35:13,774 | INFO     | **************************************
[2025-02-25 19:35:27] 2025-02-26 00:35:13,774 | INFO     | 
[2025-02-25 19:35:27] 2025-02-26 00:35:13,775 | INFO     | architecture information:
[2025-02-25 19:35:27] 2025-02-26 00:35:13,776 | INFO     | executing command: cat /etc/os-release
[2025-02-25 19:35:27] 2025-02-26 00:35:13,790 | INFO     | cat /etc/os-release:
[2025-02-25 19:35:27] NAME="CentOS Linux"
[2025-02-25 19:35:27] VERSION="7 (Core)"
[2025-02-25 19:35:27] ID="centos"
[2025-02-25 19:35:27] ID_LIKE="rhel fedora"
[2025-02-25 19:35:27] VERSION_ID="7"
[2025-02-25 19:35:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-25 19:35:27] ANSI_COLOR="0;31"
[2025-02-25 19:35:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-25 19:35:27] HOME_URL="https://www.centos.org/"
[2025-02-25 19:35:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-25 19:35:27] 
[2025-02-25 19:35:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-25 19:35:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-25 19:35:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-25 19:35:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-25 19:35:27] 
[2025-02-25 19:35:27] 2025-02-26 00:35:13,791 | INFO     | **************************************
[2025-02-25 19:35:27] 2025-02-26 00:35:14,292 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-02-25 19:35:27] 2025-02-26 00:35:14,309 | INFO     | sufficient remaining disk space (29355933696 B)
[2025-02-25 19:35:27] 2025-02-26 00:35:14,309 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-25 19:35:27] 2025-02-26 00:35:14,310 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-25 19:35:27] 2025-02-26 00:35:14,310 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-02-25 19:35:27] 2025-02-26 00:35:14,310 | INFO     | found 0 job(s) in 20 queues
[2025-02-25 19:35:27] 2025-02-26 00:35:14,310 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-25 19:35:27] 2025-02-26 00:35:14,310 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-25 19:35:27] 2025-02-26 00:35:14,369 | INFO     | all job control threads have been joined
[2025-02-25 19:35:27] 2025-02-26 00:35:14,377 | INFO     | all data control threads have been joined
[2025-02-25 19:35:27] 2025-02-26 00:35:14,470 | INFO     | all payload control threads have been joined
[2025-02-25 19:35:27] 2025-02-26 00:35:14,740 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-02-25 19:35:27] 2025-02-26 00:35:14,740 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-02-25 19:35:27] 2025-02-26 00:35:14,741 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-25 19:35:27] 2025-02-26 00:35:14,741 | INFO     | will abort loop
[2025-02-25 19:35:27] 2025-02-26 00:35:15,223 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-25 19:35:27] 2025-02-26 00:35:15,315 | INFO     | [job] retrieve thread has finished
[2025-02-25 19:35:27] 2025-02-26 00:35:15,353 | INFO     | [payload] validate_post thread has finished
[2025-02-25 19:35:27] 2025-02-26 00:35:15,375 | INFO     | [job] control thread has finished
[2025-02-25 19:35:27] 2025-02-26 00:35:15,382 | INFO     | [data] control thread has finished
[2025-02-25 19:35:27] 2025-02-26 00:35:15,466 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-25 19:35:27] 2025-02-26 00:35:15,475 | INFO     | [payload] control thread has finished
[2025-02-25 19:35:27] 2025-02-26 00:35:15,514 | INFO     | [payload] validate_pre thread has finished
[2025-02-25 19:35:27] 2025-02-26 00:35:15,743 | INFO     | [job] job monitor thread has finished
[2025-02-25 19:35:27] 2025-02-26 00:35:16,073 | INFO     | [payload] failed_post thread has finished
[2025-02-25 19:35:27] 2025-02-26 00:35:16,109 | INFO     | [data] copytool_in thread has finished
[2025-02-25 19:35:27] 2025-02-26 00:35:16,277 | INFO     | [payload] execute_payloads thread has finished
[2025-02-25 19:35:27] 2025-02-26 00:35:16,446 | INFO     | [job] validate thread has finished
[2025-02-25 19:35:27] 2025-02-26 00:35:16,612 | INFO     | [job] create_data_payload thread has finished
[2025-02-25 19:35:27] 2025-02-26 00:35:17,169 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-25 19:35:27] 2025-02-26 00:35:17,227 | INFO     | [data] copytool_out thread has finished
[2025-02-25 19:35:27] 2025-02-26 00:35:17,799 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-25 19:35:27] 2025-02-26 00:35:18,175 | INFO     | [job] queue monitor thread has finished
[2025-02-25 19:35:27] 2025-02-26 00:35:21,801 | INFO     | [data] queue_monitor thread has finished
[2025-02-25 19:35:27] 2025-02-26 00:35:22,581 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140695667599168)>', '<ExcThread(monitor, started 140694404462336)>']
[2025-02-25 19:35:27] 2025-02-26 00:35:23,353 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-25 19:35:27] 2025-02-26 00:35:23,353 | INFO     | [monitor] control thread has ended
[2025-02-25 19:35:27] 2025-02-26 00:35:27,609 | INFO     | all workflow threads have been joined
[2025-02-25 19:35:27] 2025-02-26 00:35:27,620 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-25 19:35:27] 2025-02-26 00:35:27,620 | INFO     | traces error code: 0
[2025-02-25 19:35:27] 2025-02-26 00:35:27,621 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-25 19:35:27] 2025-02-26 00:35:27,721 [wrapper] ==== pilot stdout END ====
[2025-02-25 19:35:27] 2025-02-26 00:35:27,725 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-25 19:35:27] 2025-02-26 00:35:27,729 [wrapper] pilotpid: 27789
[2025-02-25 19:35:27] 2025-02-26 00:35:27,733 [wrapper] Pilot exit status: 0
[2025-02-25 19:35:27] 2025-02-26 00:35:27,749 [wrapper] pandaids: 6531060260
[2025-02-25 19:35:27] 2025-02-26 00:35:27,784 [wrapper] cleanup supervisor_pilot 23484 27790
[2025-02-25 19:35:27] 2025-02-26 00:35:27,787 [wrapper] Test setup, not cleaning
[2025-02-25 19:35:27] 2025-02-26 00:35:27,794 [wrapper] apfmon messages muted
[2025-02-25 19:35:27] 2025-02-26 00:35:27,798 [wrapper] ==== wrapper stdout END ====
[2025-02-25 19:35:27] 2025-02-26 00:35:27,802 [wrapper] ==== wrapper stderr END ====
[2025-02-25 19:35:27]  *** Error codes and diagnostics ***
[2025-02-25 19:35:27]     "exeErrorCode": 0,
[2025-02-25 19:35:27]     "exeErrorDiag": "",
[2025-02-25 19:35:27]     "pilotErrorCode": 0,
[2025-02-25 19:35:27]     "pilotErrorDiag": "",
[2025-02-25 19:35:27]  *** Listing of results directory ***
[2025-02-25 19:35:27] total 437808
[2025-02-25 19:35:27] -rw-r--r-- 1 boincer umatlas    491065 Feb 25 17:04 pilot3.tar.gz
[2025-02-25 19:35:27] -rwx------ 1 boincer umatlas     35865 Feb 25 17:24 runpilot2-wrapper.sh
[2025-02-25 19:35:27] -rw-r--r-- 1 boincer umatlas      5118 Feb 25 17:24 queuedata.json
[2025-02-25 19:35:27] -rw-r--r-- 1 boincer umatlas       100 Feb 25 18:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-25 19:35:27] -rwxr-xr-x 1 boincer umatlas      7986 Feb 25 18:08 run_atlas
[2025-02-25 19:35:27] -rw-r--r-- 1 boincer umatlas       105 Feb 25 18:08 job.xml
[2025-02-25 19:35:27] -rw-r--r-- 2 boincer umatlas 253152002 Feb 25 18:08 EVNT.43401153._000032.pool.root.1
[2025-02-25 19:35:27] -rw-r--r-- 2 boincer umatlas     17569 Feb 25 18:08 start_atlas.sh
[2025-02-25 19:35:27] drwxrwx--x 2 boincer umatlas      4096 Feb 25 18:08 shared
[2025-02-25 19:35:27] -rw-r--r-- 2 boincer umatlas    503546 Feb 25 18:08 input.tar.gz
[2025-02-25 19:35:27] -rw-r--r-- 1 boincer umatlas         0 Feb 25 18:08 boinc_lockfile
[2025-02-25 19:35:27] -rw-r--r-- 1 boincer umatlas      2537 Feb 25 18:08 pandaJob.out
[2025-02-25 19:35:27] -rw------- 1 boincer umatlas       424 Feb 25 18:08 setup.sh.local
[2025-02-25 19:35:27] -rw------- 1 boincer umatlas    987490 Feb 25 18:08 agis_schedconf.cvmfs.json
[2025-02-25 19:35:27] -rw------- 1 boincer umatlas   1573632 Feb 25 18:08 agis_ddmendpoints.agis.ALL.json
[2025-02-25 19:35:27] drwx------ 4 boincer umatlas      4096 Feb 25 18:08 pilot3
[2025-02-25 19:35:27] -rw-r--r-- 1 boincer umatlas      5867 Feb 25 19:31 init_data.xml
[2025-02-25 19:35:27] -rw------- 1 boincer umatlas 189668916 Feb 25 19:34 HITS.43401155._000791.pool.root.1
[2025-02-25 19:35:27] -rw------- 1 boincer umatlas        95 Feb 25 19:34 pilot_heartbeat.json
[2025-02-25 19:35:27] -rw------- 1 boincer umatlas      1043 Feb 25 19:35 memory_monitor_summary.json
[2025-02-25 19:35:27] -rw-r--r-- 1 boincer umatlas      8192 Feb 25 19:35 boinc_mmap_file
[2025-02-25 19:35:27] -rw-r--r-- 1 boincer umatlas        27 Feb 25 19:35 wrapper_checkpoint.txt
[2025-02-25 19:35:27] -rw------- 1 boincer umatlas    372082 Feb 25 19:35 log.43401155._000791.job.log.tgz.1
[2025-02-25 19:35:27] -rw-r--r-- 1 boincer umatlas       529 Feb 25 19:35 boinc_task_state.xml
[2025-02-25 19:35:27] -rw------- 1 boincer umatlas      7756 Feb 25 19:35 heartbeat.json
[2025-02-25 19:35:27] -rw------- 1 boincer umatlas      4524 Feb 25 19:35 pilotlog.txt
[2025-02-25 19:35:27] -rw------- 1 boincer umatlas    483273 Feb 25 19:35 log.43401155._000791.job.log.1
[2025-02-25 19:35:27] -rw------- 1 boincer umatlas       357 Feb 25 19:35 output.list
[2025-02-25 19:35:27] -rw-r--r-- 1 boincer umatlas       620 Feb 25 19:35 runtime_log
[2025-02-25 19:35:27] -rw------- 1 boincer umatlas    870400 Feb 25 19:35 result.tar.gz
[2025-02-25 19:35:27] -rw-r--r-- 1 boincer umatlas     11015 Feb 25 19:35 runtime_log.err
[2025-02-25 19:35:27] -rw------- 1 boincer umatlas       658 Feb 25 19:35 7JkLDmVWI76nsSi4ap6QjLDmwznN0nGgGQJmkKkKDm0HxKDmpOTQDo.diag
[2025-02-25 19:35:27] -rw-r--r-- 1 boincer umatlas     22612 Feb 25 19:35 stderr.txt
[2025-02-25 19:35:27] HITS file was successfully produced:
[2025-02-25 19:35:27] -rw------- 1 boincer umatlas 189668916 Feb 25 19:34 shared/HITS.pool.root.1
[2025-02-25 19:35:27]  *** Contents of shared directory: ***
[2025-02-25 19:35:27] total 433808
[2025-02-25 19:35:27] -rw-r--r-- 2 boincer umatlas 253152002 Feb 25 18:08 ATLAS.root_0
[2025-02-25 19:35:27] -rw-r--r-- 2 boincer umatlas     17569 Feb 25 18:08 start_atlas.sh
[2025-02-25 19:35:27] -rw-r--r-- 2 boincer umatlas    503546 Feb 25 18:08 input.tar.gz
[2025-02-25 19:35:27] -rw------- 1 boincer umatlas 189668916 Feb 25 19:34 HITS.pool.root.1
[2025-02-25 19:35:27] -rw------- 1 boincer umatlas    870400 Feb 25 19:35 result.tar.gz
19:35:29 (23611): run_atlas exited; CPU time 48536.440524
19:35:29 (23611): called boinc_finish(0)

</stderr_txt>
]]>

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