Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-26 02:59:49 (18544): Detected: vboxwrapper 26206
2025-02-26 02:59:49 (18544): Detected: BOINC client v8.0.2
2025-02-26 02:59:50 (18544): Detected: VirtualBox VboxManage Interface (Version: 7.0.18)
2025-02-26 02:59:50 (18544): Successfully copied 'init_data.xml' to the shared directory.
2025-02-26 02:59:50 (18544): Create VM. (boinc_c68f7581af102a6e, slot#5)
2025-02-26 02:59:51 (18544): Setting Memory Size for VM. (4800MB)
2025-02-26 02:59:51 (18544): Setting CPU Count for VM. (8)
2025-02-26 02:59:51 (18544): Setting Chipset Options for VM.
2025-02-26 02:59:52 (18544): Setting Graphics Controller Options for VM.
2025-02-26 02:59:52 (18544): Setting Boot Options for VM.
2025-02-26 02:59:52 (18544): Setting Network Configuration for NAT.
2025-02-26 02:59:52 (18544): Enabling VM Network Access.
2025-02-26 02:59:53 (18544): Disabling USB Support for VM.
2025-02-26 02:59:53 (18544): Disabling COM Port Support for VM.
2025-02-26 02:59:53 (18544): Disabling LPT Port Support for VM.
2025-02-26 02:59:53 (18544): Disabling Audio Support for VM.
2025-02-26 02:59:54 (18544): Disabling Clipboard Support for VM.
2025-02-26 02:59:54 (18544): Disabling Drag and Drop Support for VM.
2025-02-26 02:59:54 (18544): Adding storage controller(s) to VM.
2025-02-26 02:59:54 (18544): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-26 02:59:57 (18544): Adding VirtualBox Guest Additions to VM.
2025-02-26 02:59:57 (18544): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-26 02:59:58 (18544): forwarding host port 62006 to guest port 80
2025-02-26 02:59:58 (18544): Enabling remote desktop for VM.
2025-02-26 02:59:58 (18544): Enabling shared directory for VM.
2025-02-26 02:59:59 (18544): Starting VM using VBoxManage interface. (boinc_c68f7581af102a6e, slot#5)
2025-02-26 03:00:05 (18544): Successfully started VM. (PID = '20488')
2025-02-26 03:00:05 (18544): Reporting VM Process ID to BOINC.
2025-02-26 03:00:05 (18544): Guest Log: BIOS: VirtualBox 7.0.18
2025-02-26 03:00:05 (18544): Guest Log: CPUID EDX: 0x178bfbff
2025-02-26 03:00:05 (18544): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-26 03:00:05 (18544): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-26 03:00:05 (18544): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-26 03:00:05 (18544): Detected: Web Application Enabled (http://localhost:62006)
2025-02-26 03:00:05 (18544): Detected: Remote Desktop Enabled (localhost:62007)
2025-02-26 03:00:05 (18544): Preference change detected
2025-02-26 03:00:05 (18544): Setting CPU throttle for VM. (100%)
2025-02-26 03:00:05 (18544): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-26 03:00:07 (18544): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-26 03:00:07 (18544): Guest Log: BIOS: Booting from Hard Disk...
2025-02-26 03:00:09 (18544): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-26 03:00:09 (18544): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-26 03:00:09 (18544): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-26 03:00:09 (18544): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-26 03:00:09 (18544): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-26 03:00:09 (18544): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-26 03:00:09 (18544): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-26 03:00:09 (18544): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-26 03:00:09 (18544): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-26 03:00:09 (18544): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-26 03:00:09 (18544): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-26 03:00:09 (18544): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-26 03:00:09 (18544): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-26 03:00:09 (18544): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-26 03:00:09 (18544): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-26 03:00:09 (18544): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-26 03:00:09 (18544): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-26 03:00:09 (18544): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-26 03:00:09 (18544): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-26 03:00:09 (18544): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-26 03:00:09 (18544): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-26 03:00:09 (18544): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-26 03:00:09 (18544): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-26 03:00:09 (18544): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-26 03:00:09 (18544): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-26 03:00:09 (18544): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-26 03:00:09 (18544): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-26 03:00:09 (18544): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-26 03:00:09 (18544): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-26 03:00:09 (18544): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-26 03:00:09 (18544): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-26 03:00:09 (18544): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-26 03:00:16 (18544): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-26 03:00:16 (18544): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-26 03:00:21 (18544): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-26 03:00:21 (18544): Guest Log: 00:00:00.000120 main     Log opened 2025-02-26T03:00:19.254508000Z
2025-02-26 03:00:21 (18544): Guest Log: 00:00:00.000190 main     OS Product: Linux
2025-02-26 03:00:21 (18544): Guest Log: 00:00:00.000217 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-26 03:00:21 (18544): Guest Log: 00:00:00.000239 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-26 03:00:21 (18544): Guest Log: 00:00:00.000262 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-26 03:00:21 (18544): Guest Log: 00:00:00.000262 main     Process ID: 1365
2025-02-26 03:00:21 (18544): Guest Log: 00:00:00.000263 main     Package type: LINUX_64BITS_GENERIC
2025-02-26 03:00:21 (18544): Guest Log: 00:00:00.001421 main     5.2.32 r132073 started. Verbose level = 0
2025-02-26 03:00:21 (18544): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-26 03:00:21 (18544): Guest Log: [INFO] Mounting shared directory
2025-02-26 03:00:21 (18544): Guest Log: [INFO] Checking for init_data.xml
2025-02-26 03:00:31 (18544): Guest Log: 00:00:10.004904 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 517 772 000ns (GuestNow=1 740 535 230 739 745 000 ns GuestLast=1 740 538 819 257 517 000 ns fSetTimeLastLoop=true )
2025-02-26 03:02:58 (18544): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-26 03:02:58 (18544): Guest Log: [INFO] Detected branch: prod
2025-02-26 03:02:58 (18544): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-26 03:02:58 (18544): Guest Log: Copying input files
2025-02-26 03:02:59 (18544): Guest Log: Copied input files into RunAtlas.
2025-02-26 03:02:59 (18544): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-26 03:02:59 (18544): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-26 03:02:59 (18544): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-26 03:02:59 (18544): Guest Log: Further information can be found at the LHC@home message board.
2025-02-26 03:05:17 (18544): VM state change detected. (old = 'running', new = 'paused')
2025-02-26 03:05:37 (18544): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-26 03:05:37 (18544): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-26 03:05:37 (18544): Guest Log: 2.6.3.0 1692 2 32156 143058 4 1 3117296 4096000 0 65024 0 0 n/a 1 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-02-26 03:05:37 (18544): Guest Log: copied the webapp to /var/www
2025-02-26 03:05:37 (18544): Guest Log: ATHENA_PROC_NUMBER=8
2025-02-26 03:05:37 (18544): Guest Log: ATHENA_CORE_NUMBER=8
2025-02-26 03:05:37 (18544): VM state change detected. (old = 'paused', new = 'running')
2025-02-26 03:05:38 (18544): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-26 03:05:38 (18544): Guest Log:  *** Starting ATLAS job. (PandaID=6531021792 taskID=43401155) ***
2025-02-26 03:17:41 (18544): Guest Log:  *** Job finished ***
2025-02-26 03:17:41 (18544): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-26 03:17:41 (18544): Guest Log: 2025-02-26 02:16:37,868 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-02-26 03:17:41 (18544): Guest Log: 2025-02-26 02:16:37,892 | INFO     | [job] control thread has finished
2025-02-26 03:17:41 (18544): Guest Log: 2025-02-26 02:16:42,150 | INFO     | [data] queue_monitor thread has finished
2025-02-26 03:17:41 (18544): Guest Log: 2025-02-26 02:16:44,121 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140485506975552)>', '<ExcThread(monitor, started 140484588582656)>']
2025-02-26 03:17:41 (18544): Guest Log: 2025-02-26 02:16:44,252 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-26 03:17:41 (18544): Guest Log: 2025-02-26 02:16:44,252 | INFO     | [monitor] control thread has ended
2025-02-26 03:17:41 (18544): Guest Log: 2025-02-26 02:16:49,126 | INFO     | all workflow threads have been joined
2025-02-26 03:17:41 (18544): Guest Log: 2025-02-26 02:16:49,126 | INFO     | end of generic workflow (traces error code: 0)
2025-02-26 03:17:41 (18544): Guest Log: 2025-02-26 02:16:49,126 | INFO     | traces error code: 0
2025-02-26 03:17:41 (18544): Guest Log: 2025-02-26 02:16:49,126 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-26 03:17:41 (18544): Guest Log: 2025-02-26 02:16:49,196 [wrapper] ==== pilot stdout END ====
2025-02-26 03:17:41 (18544): Guest Log: 2025-02-26 02:16:49,199 [wrapper] ==== wrapper stdout RESUME ====
2025-02-26 03:17:41 (18544): Guest Log: 2025-02-26 02:16:49,204 [wrapper] pilotpid: 6106
2025-02-26 03:17:41 (18544): Guest Log: 2025-02-26 02:16:49,208 [wrapper] Pilot exit status: 0
2025-02-26 03:17:41 (18544): Guest Log: 2025-02-26 02:17:20,727 [wrapper] pandaids: 6531021792
2025-02-26 03:17:41 (18544): Guest Log: 2025-02-26 02:17:20,757 [wrapper] cleanup supervisor_pilot  6112 6107
2025-02-26 03:17:41 (18544): Guest Log: 2025-02-26 02:17:20,762 [wrapper] Test setup, not cleaning
2025-02-26 03:17:41 (18544): Guest Log: 2025-02-26 02:17:20,771 [wrapper] apfmon messages muted
2025-02-26 03:17:41 (18544): Guest Log: 2025-02-26 02:17:20,776 [wrapper] ==== wrapper stdout END ====
2025-02-26 03:17:41 (18544): Guest Log: 2025-02-26 02:17:20,780 [wrapper] ==== wrapper stderr END ====
2025-02-26 03:17:41 (18544): Guest Log:  *** Error codes and diagnostics ***
2025-02-26 03:17:41 (18544): Guest Log:     "exeErrorCode": 65,
2025-02-26 03:17:41 (18544): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
2025-02-26 03:17:41 (18544): Guest Log:     "pilotErrorCode": 1305,
2025-02-26 03:17:41 (18544): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute 2025-02-26 02:14:00,988 CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
2025-02-26 03:17:41 (18544): Guest Log:  *** Listing of results directory ***
2025-02-26 03:17:41 (18544): Guest Log: total 3848
2025-02-26 03:17:41 (18544): Guest Log: -rw-r--r--. 1 atlas atlas  491065 Feb 25 21:07 pilot3.tar.gz
2025-02-26 03:17:41 (18544): Guest Log: -rwx------. 1 atlas atlas   35865 Feb 25 21:51 runpilot2-wrapper.sh
2025-02-26 03:17:41 (18544): Guest Log: -rw-r--r--. 1 atlas atlas    5118 Feb 25 21:51 queuedata.json
2025-02-26 03:17:41 (18544): Guest Log: -rwxr-xr-x. 1 atlas atlas    9129 Feb 26 02:02 init_data.xml
2025-02-26 03:17:41 (18544): Guest Log: -rwxr-xr-x. 1 atlas atlas  503543 Feb 26 02:02 input.tar.gz
2025-02-26 03:17:41 (18544): Guest Log: -rwxr-xr-x. 1 atlas atlas   17569 Feb 26 02:02 start_atlas.sh
2025-02-26 03:17:41 (18544): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Feb 26 02:02 EVNT.43401153._000005.pool.root.1 -> /data/./ATLAS.root_0
2025-02-26 03:17:41 (18544): Guest Log: -rw-r--r--. 1 atlas atlas    2536 Feb 26 02:05 pandaJob.out
2025-02-26 03:17:41 (18544): Guest Log: -rw-------. 1 atlas atlas     424 Feb 26 02:05 setup.sh.local
2025-02-26 03:17:41 (18544): Guest Log: -rw-------. 1 atlas atlas  987490 Feb 26 02:11 agis_schedconf.cvmfs.json
2025-02-26 03:17:41 (18544): Guest Log: -rw-------. 1 atlas atlas 1573632 Feb 26 02:11 agis_ddmendpoints.agis.ALL.json
2025-02-26 03:17:41 (18544): Guest Log: drwx------. 4 atlas atlas    4096 Feb 26 02:11 pilot3
2025-02-26 03:17:41 (18544): Guest Log: -rw-------. 1 atlas atlas    1009 Feb 26 02:14 memory_monitor_summary.json
2025-02-26 03:17:41 (18544): Guest Log: -rw-------. 1 atlas atlas   20558 Feb 26 02:14 log.43401155._000120.job.log.tgz.1
2025-02-26 03:17:41 (18544): Guest Log: -rw-------. 1 atlas atlas      95 Feb 26 02:16 pilot_heartbeat.json
2025-02-26 03:17:41 (18544): Guest Log: -rw-------. 1 atlas atlas    8432 Feb 26 02:16 heartbeat.json
2025-02-26 03:17:41 (18544): Guest Log: -rw-------. 1 atlas atlas    4398 Feb 26 02:16 pilotlog.txt
2025-02-26 03:17:41 (18544): Guest Log: -rw-------. 1 atlas atlas   84836 Feb 26 02:17 log.43401155._000120.job.log.1
2025-02-26 03:17:41 (18544): Guest Log: -rw-------. 1 atlas atlas     188 Feb 26 02:17 output.list
2025-02-26 03:17:41 (18544): Guest Log: -rw-r--r--. 1 atlas atlas     620 Feb 26 02:17 runtime_log
2025-02-26 03:17:41 (18544): Guest Log: -rw-------. 1 atlas atlas  122880 Feb 26 02:17 result.tar.gz
2025-02-26 03:17:41 (18544): Guest Log: -rw-------. 1 atlas atlas     655 Feb 26 02:17 X8kMDmL1H76n9Rq4apOajLDm4fhM0noT9bVoFjIUDmfJgKDmD2Xe1m.diag
2025-02-26 03:17:41 (18544): Guest Log: -rw-r--r--. 1 atlas atlas   10830 Feb 26 02:17 runtime_log.err
2025-02-26 03:17:41 (18544): Guest Log: Looking for outputfile HITS.43401155._000120.pool.root.1
2025-02-26 03:17:41 (18544): Guest Log: No HITS file was produced
2025-02-26 03:17:41 (18544): Guest Log: Successfully finished the ATLAS job!
2025-02-26 03:17:41 (18544): Guest Log: Copying the results back to the shared directory!
2025-02-26 03:17:41 (18544): Guest Log:  *** Contents of shared directory: ***
2025-02-26 03:17:41 (18544): Guest Log: total 247592
2025-02-26 03:17:41 (18544): Guest Log: -rwxrwxrwx. 1 root root 252872066 Feb 26 01:59 ATLAS.root_0
2025-02-26 03:17:41 (18544): Guest Log: -rwxrwxrwx. 1 root root      9129 Feb 26 01:59 init_data.xml
2025-02-26 03:17:41 (18544): Guest Log: -rwxrwxrwx. 1 root root    503543 Feb 25 21:52 input.tar.gz
2025-02-26 03:17:41 (18544): Guest Log: -rwxrwxrwx. 1 root root    122880 Feb 26  2025 result.tar.gz
2025-02-26 03:17:41 (18544): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 25 21:52 start_atlas.sh
2025-02-26 03:17:41 (18544): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-26 03:17:41 (18544): VM Completion File Detected.
2025-02-26 03:17:41 (18544): Powering off VM.
2025-02-26 03:17:41 (18544): Successfully stopped VM.
2025-02-26 03:17:41 (18544): Deregistering VM. (boinc_c68f7581af102a6e, slot#5)
2025-02-26 03:17:42 (18544): Removing network bandwidth throttle group from VM.
2025-02-26 03:17:42 (18544): Removing VM from VirtualBox.
03:17:47 (18544): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN