Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:43:31 (18201): wrapper (7.7.26015): starting
16:43:31 (18201): wrapper: running run_atlas (--nthreads 12)
[2025-02-25 16:43:31] Arguments: --nthreads 12
[2025-02-25 16:43:31] Threads: 12
[2025-02-25 16:43:31] Checking for CVMFS
[2025-02-25 16:43:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-02-25 16:43:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-02-25 16:43:31] Running cvmfs_config stat atlas.cern.ch
[2025-02-25 16:43:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-02-25 16:43:31] 2.11.2.0 5277 293695 153556 143052 3 58 19358952 20275200 1 130560 0 25202062 99.986 7785508 41139 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-02-25 16:43:31] CVMFS is ok
[2025-02-25 16:43:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-25 16:43:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-25 16:43:31] Further information can be found at the LHC@home message board.
[2025-02-25 16:43:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-25 16:43:31] Checking for apptainer binary...
[2025-02-25 16:43:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-02-25 16:43:31] Running /usr/bin/apptainer --version
[2025-02-25 16:43:31] apptainer version 1.3.2-1.el7
[2025-02-25 16:43:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-25 16:43:33] c-205-15.aglt2.org
[2025-02-25 16:43:33] apptainer works
[2025-02-25 16:43:33] Set ATHENA_PROC_NUMBER=12
[2025-02-25 16:43:33] Set ATHENA_CORE_NUMBER=12
[2025-02-25 16:43:33] Starting ATLAS job with PandaID=6531002363
[2025-02-25 16:43:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-25 18:07:57]  *** The last 200 lines of the pilot log: ***
[2025-02-25 18:07:57]  scope=mc23_13p6TeV
[2025-02-25 18:07:57]  status=None
[2025-02-25 18:07:57]  status_code=0
[2025-02-25 18:07:57]  storage_token=
[2025-02-25 18:07:57]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6531002363/log.43401171._001604.job.log.tgz.1
[2025-02-25 18:07:57]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bd/f8/log.43401171._001604.job.log.tgz.1
[2025-02-25 18:07:57]  workdir=None
[2025-02-25 18:07:57] ]
[2025-02-25 18:07:57] 2025-02-25 23:07:34,769 | INFO     | transferring file log.43401171._001604.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6531002363/log.43401171._001604.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-02-25 18:07:57] 2025-02-25 23:07:34,769 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6531002363/log.43401171._001604.job.log.tgz.1 /tmp/boinchome/slots/0/log.43401171._001604.job
[2025-02-25 18:07:57] 2025-02-25 23:07:34,791 | INFO     | adding to output.list: log.43401171._001604.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bd/f8/log.43401171._001604.job.log.tg
[2025-02-25 18:07:57] 2025-02-25 23:07:34,792 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-02-25 18:07:57] 2025-02-25 23:07:34,793 | INFO     | summary of transferred files:
[2025-02-25 18:07:57] 2025-02-25 23:07:34,793 | INFO     |  -- lfn=log.43401171._001604.job.log.tgz.1, status_code=0, status=transferred
[2025-02-25 18:07:57] 2025-02-25 23:07:34,793 | INFO     | stage-out finished correctly
[2025-02-25 18:07:57] 2025-02-25 23:07:35,505 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-02-25 18:07:57] 2025-02-25 23:07:37,034 | INFO     | job 6531002363 has state=finished
[2025-02-25 18:07:57] 2025-02-25 23:07:37,034 | INFO     | preparing for final server update for job 6531002363 in state='finished'
[2025-02-25 18:07:57] 2025-02-25 23:07:37,035 | INFO     | this job has now completed (state=finished)
[2025-02-25 18:07:57] 2025-02-25 23:07:37,035 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-02-25 18:07:57] 2025-02-25 23:07:37,035 | INFO     | log transfer has been attempted: DONE
[2025-02-25 18:07:57] 2025-02-25 23:07:37,035 | INFO     | job 6531002363 has finished - writing final server update
[2025-02-25 18:07:57] 2025-02-25 23:07:37,035 | INFO     | total number of processed events: 400 (read)
[2025-02-25 18:07:57] 2025-02-25 23:07:37,037 | INFO     | executing command: lscpu
[2025-02-25 18:07:57] 2025-02-25 23:07:37,062 | INFO     | found 12 cores (6 cores per socket, 2 sockets)
[2025-02-25 18:07:57] 2025-02-25 23:07:37,076 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-02-25 18:07:57] 2025-02-25 23:07:40,790 | INFO     | PID=21805 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-02-25 18:07:57] 2025-02-25 23:07:42,394 | INFO     | CPU arch script returned: x86-64-v2
[2025-02-25 18:07:57] 2025-02-25 23:07:42,394 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6531002363/memory_monitor_summary.json (trf name=prmon)
[2025-02-25 18:07:57] 2025-02-25 23:07:42,395 | INFO     | extracted standard info from prmon json
[2025-02-25 18:07:57] 2025-02-25 23:07:42,396 | INFO     | extracted standard memory fields from prmon json
[2025-02-25 18:07:57] 2025-02-25 23:07:42,396 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-02-25 18:07:57] 2025-02-25 23:07:42,396 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-02-25 18:07:57] 2025-02-25 23:07:42,396 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-02-25 18:07:57] 2025-02-25 23:07:42,399 | INFO     | fitting pss+swap vs Time
[2025-02-25 18:07:57] 2025-02-25 23:07:42,399 | INFO     | model: linear, x: [1740520160.0, 1740520221.0, 1740520282.0, 1740520343.0, 1740520404.0, 1740520465.0, 1740520526.0, 1740520587.0, 1740520648.0, 1740520709.0, 1740
[2025-02-25 18:07:57] 2025-02-25 23:07:42,399 | INFO     | sum of square deviations: 130793150.0
[2025-02-25 18:07:57] 2025-02-25 23:07:42,399 | INFO     | sum of deviations: 19436140249.999996
[2025-02-25 18:07:57] 2025-02-25 23:07:42,400 | INFO     | mean x: 1740522417.0
[2025-02-25 18:07:57] 2025-02-25 23:07:42,400 | INFO     | mean y: 2599261.8933333335
[2025-02-25 18:07:57] 2025-02-25 23:07:42,400 | INFO     | -- intersect: -258642733502.71225
[2025-02-25 18:07:57] 2025-02-25 23:07:42,400 | INFO     | intersect: -258642733502.71225
[2025-02-25 18:07:57] 2025-02-25 23:07:42,404 | INFO     | chi2: 2.2546128798052347
[2025-02-25 18:07:57] 2025-02-25 23:07:42,404 | INFO     | -- intersect: -258642733502.71225
[2025-02-25 18:07:57] 2025-02-25 23:07:42,404 | INFO     | current memory leak: 148.60 B/s (using 75 data points, chi2=2.25)
[2025-02-25 18:07:57] 2025-02-25 23:07:42,405 | INFO     | ..............................
[2025-02-25 18:07:57] 2025-02-25 23:07:42,405 | INFO     | . Timing measurements:
[2025-02-25 18:07:57] 2025-02-25 23:07:42,405 | INFO     | . get job = 0 s
[2025-02-25 18:07:57] 2025-02-25 23:07:42,406 | INFO     | . initial setup = 2 s
[2025-02-25 18:07:57] 2025-02-25 23:07:42,406 | INFO     | . payload setup = 7 s
[2025-02-25 18:07:57] 2025-02-25 23:07:42,406 | INFO     | . stage-in = 0 s
[2025-02-25 18:07:57] 2025-02-25 23:07:42,406 | INFO     | . payload execution = 5000 s
[2025-02-25 18:07:57] 2025-02-25 23:07:42,406 | INFO     | . stage-out = 0 s
[2025-02-25 18:07:57] 2025-02-25 23:07:42,406 | INFO     | . log creation = 0 s
[2025-02-25 18:07:57] 2025-02-25 23:07:42,406 | INFO     | ..............................
[2025-02-25 18:07:57] 2025-02-25 23:07:42,466 | WARNING  | process 29125 can no longer be monitored (due to stat problems) - aborting
[2025-02-25 18:07:57] 2025-02-25 23:07:42,466 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6531002363/memory_monitor_summary.json (trf name=prmon)
[2025-02-25 18:07:57] 2025-02-25 23:07:42,483 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6531002363/memory_monitor_summary.json (trf name=prmon)
[2025-02-25 18:07:57] 2025-02-25 23:07:42,501 | INFO     | 
[2025-02-25 18:07:57] 2025-02-25 23:07:42,501 | INFO     | job summary report
[2025-02-25 18:07:57] 2025-02-25 23:07:42,502 | INFO     | --------------------------------------------------
[2025-02-25 18:07:57] 2025-02-25 23:07:42,502 | INFO     | PanDA job id: 6531002363
[2025-02-25 18:07:57] 2025-02-25 23:07:42,502 | INFO     | task id: 43401171
[2025-02-25 18:07:57] 2025-02-25 23:07:42,503 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4195005 B
[2025-02-25 18:07:57] 2025-02-25 23:07:42,503 | INFO     | errors: (none)
[2025-02-25 18:07:57] 2025-02-25 23:07:42,503 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15297 B
[2025-02-25 18:07:57] 2025-02-25 23:07:42,503 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-25 18:07:57] 2025-02-25 23:07:42,504 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-02-25 18:07:57] 2025-02-25 23:07:42,504 | INFO     | pilot state: finished 
[2025-02-25 18:07:57] 2025-02-25 23:07:42,504 | INFO     | transexitcode: 0
[2025-02-25 18:07:57] 2025-02-25 23:07:42,505 | INFO     | exeerrorcode: 0
[2025-02-25 18:07:57] 2025-02-25 23:07:42,505 | INFO     | exeerrordiag: 
[2025-02-25 18:07:57] 2025-02-25 23:07:42,505 | INFO     | exitcode: 0
[2025-02-25 18:07:57] 2025-02-25 23:07:42,505 | INFO     | exitmsg: OK
[2025-02-25 18:07:57] 2025-02-25 23:07:42,505 | INFO     | cpuconsumptiontime: 47109 s
[2025-02-25 18:07:57] 2025-02-25 23:07:42,509 | INFO     | nevents: 400
[2025-02-25 18:07:57] 2025-02-25 23:07:42,509 | INFO     | neventsw: 0
[2025-02-25 18:07:57] 2025-02-25 23:07:42,509 | INFO     | pid: 29125
[2025-02-25 18:07:57] 2025-02-25 23:07:42,509 | INFO     | pgrp: 29125
[2025-02-25 18:07:57] 2025-02-25 23:07:42,509 | INFO     | corecount: 12
[2025-02-25 18:07:57] 2025-02-25 23:07:42,510 | INFO     | event service: False
[2025-02-25 18:07:57] 2025-02-25 23:07:42,510 | INFO     | sizes: {0: 2370385, 5: 2370591, 11: 2370647, 5012: 2396730, 5013: 2405671, 5014: 2405727, 5021: 2406025}
[2025-02-25 18:07:57] 2025-02-25 23:07:42,510 | INFO     | --------------------------------------------------
[2025-02-25 18:07:57] 2025-02-25 23:07:42,510 | INFO     | 
[2025-02-25 18:07:57] 2025-02-25 23:07:42,510 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-02-25 18:07:57] 2025-02-25 23:07:42,523 | INFO     | sufficient remaining disk space (29355933696 B)
[2025-02-25 18:07:57] 2025-02-25 23:07:42,523 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-02-25 18:07:57] 2025-02-25 23:07:42,524 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6531002363: 4495361 B (within 2537553920 B limit)
[2025-02-25 18:07:57] 2025-02-25 23:07:42,525 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6531002363/HITS.43401171._001604.pool.root.1 does not exist (skip from workdir size calculation)
[2025-02-25 18:07:57] 2025-02-25 23:07:42,525 | INFO     | total size of present files: 0 B (workdir size: 4495361 B)
[2025-02-25 18:07:57] 2025-02-25 23:07:42,525 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6531002363/HITS.43401171._001604.pool.root.1 since it does not exist
[2025-02-25 18:07:57] 2025-02-25 23:07:42,535 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-25 18:07:57] 2025-02-25 23:07:42,536 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-25 18:07:57] 2025-02-25 23:07:42,536 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-25 18:07:57] 2025-02-25 23:07:42,536 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-25 18:07:57] 2025-02-25 23:07:42,536 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-25 18:07:57] 2025-02-25 23:07:42,536 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-25 18:07:57] 2025-02-25 23:07:42,537 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-25 18:07:57] 2025-02-25 23:07:42,537 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-25 18:07:57] 2025-02-25 23:07:42,537 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-25 18:07:57] 2025-02-25 23:07:42,537 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-25 18:07:57] 2025-02-25 23:07:42,537 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-25 18:07:57] 2025-02-25 23:07:42,537 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-25 18:07:57] 2025-02-25 23:07:42,538 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-25 18:07:57] 2025-02-25 23:07:42,538 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-25 18:07:57] 2025-02-25 23:07:42,538 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-25 18:07:57] 2025-02-25 23:07:42,538 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-25 18:07:57] 2025-02-25 23:07:42,538 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-25 18:07:57] 2025-02-25 23:07:42,538 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-25 18:07:57] 2025-02-25 23:07:42,538 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-25 18:07:57] 2025-02-25 23:07:42,539 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-25 18:07:57] 2025-02-25 23:07:42,539 | INFO     | job 6531002363 has completed (purged errors)
[2025-02-25 18:07:57] 2025-02-25 23:07:42,539 | INFO     | overall cleanup function is called
[2025-02-25 18:07:57] 2025-02-25 23:07:42,586 | INFO     | number of running child processes to parent process 29125: 1
[2025-02-25 18:07:57] 2025-02-25 23:07:42,586 | INFO     | maximum number of monitored processes: 6
[2025-02-25 18:07:57] 2025-02-25 23:07:42,586 | INFO     | aborting job monitoring since job object (job id=6531002363) has expired
[2025-02-25 18:07:57] 2025-02-25 23:07:43,547 | INFO     | --- collectZombieJob: --- 10, [29125]
[2025-02-25 18:07:57] 2025-02-25 23:07:43,547 | INFO     | zombie collector waiting for pid 29125
[2025-02-25 18:07:57] 2025-02-25 23:07:43,547 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-25 18:07:57] 2025-02-25 23:07:43,548 | INFO     | collected zombie processes
[2025-02-25 18:07:57] 2025-02-25 23:07:43,548 | INFO     | will attempt to kill all subprocesses of pid=29125
[2025-02-25 18:07:57] 2025-02-25 23:07:43,607 | INFO     | process IDs to be killed: [29125] (in reverse order)
[2025-02-25 18:07:57] 2025-02-25 23:07:43,656 | WARNING  | found no corresponding commands to process id(s)
[2025-02-25 18:07:57] 2025-02-25 23:07:43,657 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-25 18:07:57] 2025-02-25 23:07:43,659 | INFO     | did not find any defunct processes belonging to 29125
[2025-02-25 18:07:57] 2025-02-25 23:07:43,661 | INFO     | did not find any defunct processes belonging to 29125
[2025-02-25 18:07:57] 2025-02-25 23:07:43,661 | INFO     | ready for new job
[2025-02-25 18:07:57] 2025-02-25 23:07:43,662 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-25 18:07:57] 2025-02-25 23:07:43,663 | INFO     | **************************************
[2025-02-25 18:07:57] 2025-02-25 23:07:43,663 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-25 18:07:57] 2025-02-25 23:07:43,663 | INFO     | **************************************
[2025-02-25 18:07:57] 2025-02-25 23:07:43,663 | INFO     | 
[2025-02-25 18:07:57] 2025-02-25 23:07:43,663 | INFO     | architecture information:
[2025-02-25 18:07:57] 2025-02-25 23:07:43,664 | INFO     | executing command: cat /etc/os-release
[2025-02-25 18:07:57] 2025-02-25 23:07:43,679 | INFO     | cat /etc/os-release:
[2025-02-25 18:07:57] NAME="CentOS Linux"
[2025-02-25 18:07:57] VERSION="7 (Core)"
[2025-02-25 18:07:57] ID="centos"
[2025-02-25 18:07:57] ID_LIKE="rhel fedora"
[2025-02-25 18:07:57] VERSION_ID="7"
[2025-02-25 18:07:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-25 18:07:57] ANSI_COLOR="0;31"
[2025-02-25 18:07:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-25 18:07:57] HOME_URL="https://www.centos.org/"
[2025-02-25 18:07:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-25 18:07:57] 
[2025-02-25 18:07:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-25 18:07:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-25 18:07:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-25 18:07:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-25 18:07:57] 
[2025-02-25 18:07:57] 2025-02-25 23:07:43,679 | INFO     | **************************************
[2025-02-25 18:07:57] 2025-02-25 23:07:44,182 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-02-25 18:07:57] 2025-02-25 23:07:44,198 | INFO     | sufficient remaining disk space (29361176576 B)
[2025-02-25 18:07:57] 2025-02-25 23:07:44,198 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-25 18:07:57] 2025-02-25 23:07:44,199 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-25 18:07:57] 2025-02-25 23:07:44,199 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-25 18:07:57] 2025-02-25 23:07:44,199 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-25 18:07:57] 2025-02-25 23:07:44,199 | INFO     | aborting loop
[2025-02-25 18:07:57] 2025-02-25 23:07:44,801 | INFO     | found 0 job(s) in 20 queues
[2025-02-25 18:07:57] 2025-02-25 23:07:44,801 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-25 18:07:57] 2025-02-25 23:07:44,802 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-25 18:07:57] 2025-02-25 23:07:44,958 | INFO     | all payload control threads have been joined
[2025-02-25 18:07:57] 2025-02-25 23:07:45,169 | INFO     | all data control threads have been joined
[2025-02-25 18:07:57] 2025-02-25 23:07:45,204 | INFO     | [job] retrieve thread has finished
[2025-02-25 18:07:57] 2025-02-25 23:07:45,205 | INFO     | [job] queue monitor thread has finished
[2025-02-25 18:07:57] 2025-02-25 23:07:45,206 | INFO     | [job] job monitor thread has finished
[2025-02-25 18:07:57] 2025-02-25 23:07:45,391 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-25 18:07:57] 2025-02-25 23:07:45,400 | INFO     | [payload] execute_payloads thread has finished
[2025-02-25 18:07:57] 2025-02-25 23:07:45,434 | INFO     | all job control threads have been joined
[2025-02-25 18:07:57] 2025-02-25 23:07:45,599 | INFO     | [payload] validate_pre thread has finished
[2025-02-25 18:07:57] 2025-02-25 23:07:45,903 | INFO     | [data] copytool_in thread has finished
[2025-02-25 18:07:57] 2025-02-25 23:07:45,963 | INFO     | [payload] control thread has finished
[2025-02-25 18:07:57] 2025-02-25 23:07:46,092 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-25 18:07:57] 2025-02-25 23:07:46,145 | INFO     | [payload] validate_post thread has finished
[2025-02-25 18:07:57] 2025-02-25 23:07:46,175 | INFO     | [data] control thread has finished
[2025-02-25 18:07:57] 2025-02-25 23:07:46,268 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-25 18:07:57] 2025-02-25 23:07:46,439 | INFO     | [job] control thread has finished
[2025-02-25 18:07:57] 2025-02-25 23:07:46,572 | INFO     | [job] validate thread has finished
[2025-02-25 18:07:57] 2025-02-25 23:07:46,657 | INFO     | [job] create_data_payload thread has finished
[2025-02-25 18:07:57] 2025-02-25 23:07:46,764 | INFO     | [payload] failed_post thread has finished
[2025-02-25 18:07:57] 2025-02-25 23:07:47,396 | INFO     | [data] copytool_out thread has finished
[2025-02-25 18:07:57] 2025-02-25 23:07:50,098 | INFO     | [data] queue_monitor thread has finished
[2025-02-25 18:07:57] 2025-02-25 23:07:51,786 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139625946044224)>', '<ExcThread(monitor, started 139625150539520)>']
[2025-02-25 18:07:57] 2025-02-25 23:07:51,836 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-25 18:07:57] 2025-02-25 23:07:51,836 | INFO     | [monitor] control thread has ended
[2025-02-25 18:07:57] 2025-02-25 23:07:56,812 | INFO     | all workflow threads have been joined
[2025-02-25 18:07:57] 2025-02-25 23:07:56,812 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-25 18:07:57] 2025-02-25 23:07:56,812 | INFO     | traces error code: 0
[2025-02-25 18:07:57] 2025-02-25 23:07:56,813 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-25 18:07:57] 2025-02-25 23:07:56,899 [wrapper] ==== pilot stdout END ====
[2025-02-25 18:07:57] 2025-02-25 23:07:56,904 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-25 18:07:57] 2025-02-25 23:07:56,907 [wrapper] pilotpid: 21805
[2025-02-25 18:07:57] 2025-02-25 23:07:56,911 [wrapper] Pilot exit status: 0
[2025-02-25 18:07:57] 2025-02-25 23:07:56,928 [wrapper] pandaids: 6531002363
[2025-02-25 18:07:57] 2025-02-25 23:07:56,972 [wrapper] cleanup supervisor_pilot 17808 21806
[2025-02-25 18:07:57] 2025-02-25 23:07:56,976 [wrapper] Test setup, not cleaning
[2025-02-25 18:07:57] 2025-02-25 23:07:56,983 [wrapper] apfmon messages muted
[2025-02-25 18:07:57] 2025-02-25 23:07:56,987 [wrapper] ==== wrapper stdout END ====
[2025-02-25 18:07:57] 2025-02-25 23:07:56,991 [wrapper] ==== wrapper stderr END ====
[2025-02-25 18:07:57]  *** Error codes and diagnostics ***
[2025-02-25 18:07:57]     "exeErrorCode": 0,
[2025-02-25 18:07:57]     "exeErrorDiag": "",
[2025-02-25 18:07:57]     "pilotErrorCode": 0,
[2025-02-25 18:07:57]     "pilotErrorDiag": "",
[2025-02-25 18:07:57]  *** Listing of results directory ***
[2025-02-25 18:07:57] total 433320
[2025-02-25 18:07:57] -rw-r--r-- 1 boincer umatlas    491065 Feb 25 16:07 pilot3.tar.gz
[2025-02-25 18:07:57] -rw-r--r-- 1 boincer umatlas      5118 Feb 25 16:38 queuedata.json
[2025-02-25 18:07:57] -rwx------ 1 boincer umatlas     35865 Feb 25 16:38 runpilot2-wrapper.sh
[2025-02-25 18:07:57] -rw-r--r-- 1 boincer umatlas       100 Feb 25 16:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-25 18:07:57] -rwxr-xr-x 1 boincer umatlas      7986 Feb 25 16:43 run_atlas
[2025-02-25 18:07:57] -rw-r--r-- 1 boincer umatlas       105 Feb 25 16:43 job.xml
[2025-02-25 18:07:57] -rw-r--r-- 2 boincer umatlas 252344901 Feb 25 16:43 EVNT.43401169._000064.pool.root.1
[2025-02-25 18:07:57] -rw-r--r-- 2 boincer umatlas     17569 Feb 25 16:43 start_atlas.sh
[2025-02-25 18:07:57] drwxrwx--x 2 boincer umatlas      4096 Feb 25 16:43 shared
[2025-02-25 18:07:57] -rw-r--r-- 2 boincer umatlas    503557 Feb 25 16:43 input.tar.gz
[2025-02-25 18:07:57] -rw-r--r-- 1 boincer umatlas         0 Feb 25 16:43 boinc_lockfile
[2025-02-25 18:07:57] -rw-r--r-- 1 boincer umatlas      2543 Feb 25 16:43 pandaJob.out
[2025-02-25 18:07:57] -rw------- 1 boincer umatlas       424 Feb 25 16:43 setup.sh.local
[2025-02-25 18:07:57] -rw------- 1 boincer umatlas    987482 Feb 25 16:43 agis_schedconf.cvmfs.json
[2025-02-25 18:07:57] -rw------- 1 boincer umatlas   1573632 Feb 25 16:43 agis_ddmendpoints.agis.ALL.json
[2025-02-25 18:07:57] drwx------ 4 boincer umatlas      4096 Feb 25 16:43 pilot3
[2025-02-25 18:07:57] -rw-r--r-- 1 boincer umatlas      5867 Feb 25 18:03 init_data.xml
[2025-02-25 18:07:57] -rw------- 1 boincer umatlas        95 Feb 25 18:06 pilot_heartbeat.json
[2025-02-25 18:07:57] -rw------- 1 boincer umatlas 185903768 Feb 25 18:07 HITS.43401171._001604.pool.root.1
[2025-02-25 18:07:57] -rw-r--r-- 1 boincer umatlas       529 Feb 25 18:07 boinc_task_state.xml
[2025-02-25 18:07:57] -rw------- 1 boincer umatlas      1044 Feb 25 18:07 memory_monitor_summary.json
[2025-02-25 18:07:57] -rw------- 1 boincer umatlas    365620 Feb 25 18:07 log.43401171._001604.job.log.tgz.1
[2025-02-25 18:07:57] -rw------- 1 boincer umatlas      7761 Feb 25 18:07 heartbeat.json
[2025-02-25 18:07:57] -rw-r--r-- 1 boincer umatlas      8192 Feb 25 18:07 boinc_mmap_file
[2025-02-25 18:07:57] -rw-r--r-- 1 boincer umatlas        27 Feb 25 18:07 wrapper_checkpoint.txt
[2025-02-25 18:07:57] -rw------- 1 boincer umatlas      4215 Feb 25 18:07 pilotlog.txt
[2025-02-25 18:07:57] -rw------- 1 boincer umatlas    470686 Feb 25 18:07 log.43401171._001604.job.log.1
[2025-02-25 18:07:57] -rw------- 1 boincer umatlas       357 Feb 25 18:07 output.list
[2025-02-25 18:07:57] -rw-r--r-- 1 boincer umatlas       620 Feb 25 18:07 runtime_log
[2025-02-25 18:07:57] -rw------- 1 boincer umatlas    860160 Feb 25 18:07 result.tar.gz
[2025-02-25 18:07:57] -rw-r--r-- 1 boincer umatlas     11015 Feb 25 18:07 runtime_log.err
[2025-02-25 18:07:57] -rw------- 1 boincer umatlas       658 Feb 25 18:07 Ey3KDmToH76n9Rq4apOajLDm4fhM0noT9bVoFjIUDmFHgKDmfB22dn.diag
[2025-02-25 18:07:57] -rw-r--r-- 1 boincer umatlas     22369 Feb 25 18:07 stderr.txt
[2025-02-25 18:07:57] HITS file was successfully produced:
[2025-02-25 18:07:57] -rw------- 1 boincer umatlas 185903768 Feb 25 18:07 shared/HITS.pool.root.1
[2025-02-25 18:07:57]  *** Contents of shared directory: ***
[2025-02-25 18:07:57] total 429336
[2025-02-25 18:07:57] -rw-r--r-- 2 boincer umatlas 252344901 Feb 25 16:43 ATLAS.root_0
[2025-02-25 18:07:57] -rw-r--r-- 2 boincer umatlas     17569 Feb 25 16:43 start_atlas.sh
[2025-02-25 18:07:57] -rw-r--r-- 2 boincer umatlas    503557 Feb 25 16:43 input.tar.gz
[2025-02-25 18:07:57] -rw------- 1 boincer umatlas 185903768 Feb 25 18:07 HITS.pool.root.1
[2025-02-25 18:07:57] -rw------- 1 boincer umatlas    860160 Feb 25 18:07 result.tar.gz
18:07:58 (18201): run_atlas exited; CPU time 47049.622184
18:07:58 (18201): called boinc_finish(0)

</stderr_txt>
]]>

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