Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:50:24 (3932719): wrapper (7.7.26015): starting
18:50:24 (3932719): wrapper: running run_atlas (--nthreads 12)
[2025-02-25 18:50:24] Arguments: --nthreads 12
[2025-02-25 18:50:24] Threads: 12
[2025-02-25 18:50:24] Checking for CVMFS
[2025-02-25 18:50:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-02-25 18:50:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-02-25 18:50:24] Running cvmfs_config stat atlas.cern.ch
[2025-02-25 18:50:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-02-25 18:50:25] 2.11.5.0 1791390 32726 341756 143059 0 484 44813196 45568001 10382 130560 0 165392363 99.645 206761624 28155 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-02-25 18:50:25] CVMFS is ok
[2025-02-25 18:50:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-25 18:50:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-25 18:50:25] Further information can be found at the LHC@home message board.
[2025-02-25 18:50:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-25 18:50:25] Checking for apptainer binary...
[2025-02-25 18:50:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-02-25 18:50:25] Running /usr/bin/apptainer --version
[2025-02-25 18:50:25] apptainer version 1.3.5-1.el9
[2025-02-25 18:50:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-25 18:50:25] WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0058.triumf.lcg
[2025-02-25 18:50:25] apptainer works
[2025-02-25 18:50:25] Set ATHENA_PROC_NUMBER=12
[2025-02-25 18:50:25] Set ATHENA_CORE_NUMBER=12
[2025-02-25 18:50:25] Starting ATLAS job with PandaID=6531002307
[2025-02-25 18:50:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-25 19:53:42]  *** The last 200 lines of the pilot log: ***
[2025-02-25 19:53:42]  lfn=log.43401171._001548.job.log.tgz.1
[2025-02-25 19:53:42]  mtime=0
[2025-02-25 19:53:42]  protocol_id=None
[2025-02-25 19:53:42]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-02-25 19:53:42]  replicas=None
[2025-02-25 19:53:42]  scope=mc23_13p6TeV
[2025-02-25 19:53:42]  status=None
[2025-02-25 19:53:42]  status_code=0
[2025-02-25 19:53:42]  storage_token=
[2025-02-25 19:53:42]  surl=/home/boinc/slots/0/PanDA_Pilot-6531002307/log.43401171._001548.job.log.tgz.1
[2025-02-25 19:53:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6a/d6/log.43401171._001548.job.log.tgz.1
[2025-02-25 19:53:42]  workdir=None
[2025-02-25 19:53:42] ]
[2025-02-25 19:53:42] 2025-02-26 03:53:25,606 | INFO     | transferring file log.43401171._001548.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6531002307/log.43401171._001548.job.log.tgz.1 to /home/boinc/slots/0/log.
[2025-02-25 19:53:42] 2025-02-26 03:53:25,606 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6531002307/log.43401171._001548.job.log.tgz.1 /home/boinc/slots/0/log.43401171._001548.job.log.t
[2025-02-25 19:53:42] 2025-02-26 03:53:25,617 | INFO     | adding to output.list: log.43401171._001548.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6a/d6/log.43401171._001548.job.log.tg
[2025-02-25 19:53:42] 2025-02-26 03:53:25,618 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-02-25 19:53:42] 2025-02-26 03:53:25,618 | INFO     | summary of transferred files:
[2025-02-25 19:53:42] 2025-02-26 03:53:25,618 | INFO     |  -- lfn=log.43401171._001548.job.log.tgz.1, status_code=0, status=transferred
[2025-02-25 19:53:42] 2025-02-26 03:53:25,619 | INFO     | stage-out finished correctly
[2025-02-25 19:53:42] 2025-02-26 03:53:26,683 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-02-25 19:53:42] 2025-02-26 03:53:26,925 | INFO     | job 6531002307 has state=finished
[2025-02-25 19:53:42] 2025-02-26 03:53:26,925 | INFO     | preparing for final server update for job 6531002307 in state='finished'
[2025-02-25 19:53:42] 2025-02-26 03:53:26,926 | INFO     | this job has now completed (state=finished)
[2025-02-25 19:53:42] 2025-02-26 03:53:26,926 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-02-25 19:53:42] 2025-02-26 03:53:26,926 | INFO     | log transfer has been attempted: DONE
[2025-02-25 19:53:42] 2025-02-26 03:53:26,926 | INFO     | job 6531002307 has finished - writing final server update
[2025-02-25 19:53:42] 2025-02-26 03:53:26,926 | INFO     | total number of processed events: 400 (read)
[2025-02-25 19:53:42] 2025-02-26 03:53:26,928 | INFO     | executing command: lscpu
[2025-02-25 19:53:42] 2025-02-26 03:53:26,960 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2025-02-25 19:53:42] 2025-02-26 03:53:26,972 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-02-25 19:53:42] 2025-02-26 03:53:29,648 | INFO     | CPU arch script returned: x86-64-v4
[2025-02-25 19:53:42] 2025-02-26 03:53:29,649 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6531002307/memory_monitor_summary.json (trf name=prmon)
[2025-02-25 19:53:42] 2025-02-26 03:53:29,649 | INFO     | extracted standard info from prmon json
[2025-02-25 19:53:42] 2025-02-26 03:53:29,650 | INFO     | extracted standard memory fields from prmon json
[2025-02-25 19:53:42] 2025-02-26 03:53:29,650 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-02-25 19:53:42] 2025-02-26 03:53:29,650 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-02-25 19:53:42] 2025-02-26 03:53:29,650 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-02-25 19:53:42] 2025-02-26 03:53:29,651 | INFO     | fitting pss+swap vs Time
[2025-02-25 19:53:42] 2025-02-26 03:53:29,651 | INFO     | model: linear, x: [1740538561.0, 1740538622.0, 1740538683.0, 1740538744.0, 1740538805.0, 1740538866.0, 1740538927.0, 1740538988.0, 1740539049.0, 1740539110.0, 1740
[2025-02-25 19:53:42] 2025-02-26 03:53:29,651 | INFO     | sum of square deviations: 51573060.0
[2025-02-25 19:53:42] 2025-02-26 03:53:29,651 | INFO     | sum of deviations: 11983912624.0
[2025-02-25 19:53:42] 2025-02-26 03:53:29,652 | INFO     | mean x: 1740540208.0
[2025-02-25 19:53:42] 2025-02-26 03:53:29,652 | INFO     | mean y: 2633534.8727272726
[2025-02-25 19:53:42] 2025-02-26 03:53:29,652 | INFO     | -- intersect: -404442667388.33765
[2025-02-25 19:53:42] 2025-02-26 03:53:29,652 | INFO     | intersect: -404442667388.33765
[2025-02-25 19:53:42] 2025-02-26 03:53:29,652 | INFO     | chi2: 1.7609704863980729
[2025-02-25 19:53:42] 2025-02-26 03:53:29,652 | INFO     | -- intersect: -404442667388.33765
[2025-02-25 19:53:42] 2025-02-26 03:53:29,652 | INFO     | current memory leak: 232.37 B/s (using 55 data points, chi2=1.76)
[2025-02-25 19:53:42] 2025-02-26 03:53:29,652 | INFO     | ..............................
[2025-02-25 19:53:42] 2025-02-26 03:53:29,653 | INFO     | . Timing measurements:
[2025-02-25 19:53:42] 2025-02-26 03:53:29,653 | INFO     | . get job = 0 s
[2025-02-25 19:53:42] 2025-02-26 03:53:29,653 | INFO     | . initial setup = 3 s
[2025-02-25 19:53:42] 2025-02-26 03:53:29,653 | INFO     | . payload setup = 4 s
[2025-02-25 19:53:42] 2025-02-26 03:53:29,653 | INFO     | . stage-in = 0 s
[2025-02-25 19:53:42] 2025-02-26 03:53:29,653 | INFO     | . payload execution = 3749 s
[2025-02-25 19:53:42] 2025-02-26 03:53:29,653 | INFO     | . stage-out = 0 s
[2025-02-25 19:53:42] 2025-02-26 03:53:29,653 | INFO     | . log creation = 0 s
[2025-02-25 19:53:42] 2025-02-26 03:53:29,653 | INFO     | ..............................
[2025-02-25 19:53:42] 2025-02-26 03:53:29,705 | INFO     | 
[2025-02-25 19:53:42] 2025-02-26 03:53:29,705 | INFO     | job summary report
[2025-02-25 19:53:42] 2025-02-26 03:53:29,705 | INFO     | --------------------------------------------------
[2025-02-25 19:53:42] 2025-02-26 03:53:29,706 | INFO     | PanDA job id: 6531002307
[2025-02-25 19:53:42] 2025-02-26 03:53:29,706 | INFO     | task id: 43401171
[2025-02-25 19:53:42] 2025-02-26 03:53:29,706 | INFO     | errors: (none)
[2025-02-25 19:53:42] 2025-02-26 03:53:29,706 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-25 19:53:42] 2025-02-26 03:53:29,706 | INFO     | pilot state: finished 
[2025-02-25 19:53:42] 2025-02-26 03:53:29,706 | INFO     | transexitcode: 0
[2025-02-25 19:53:42] 2025-02-26 03:53:29,706 | INFO     | exeerrorcode: 0
[2025-02-25 19:53:42] 2025-02-26 03:53:29,706 | INFO     | exeerrordiag: 
[2025-02-25 19:53:42] 2025-02-26 03:53:29,706 | INFO     | exitcode: 0
[2025-02-25 19:53:42] 2025-02-26 03:53:29,706 | INFO     | exitmsg: OK
[2025-02-25 19:53:42] 2025-02-26 03:53:29,706 | INFO     | cpuconsumptiontime: 27027 s
[2025-02-25 19:53:42] 2025-02-26 03:53:29,706 | INFO     | nevents: 400
[2025-02-25 19:53:42] 2025-02-26 03:53:29,706 | INFO     | neventsw: 0
[2025-02-25 19:53:42] 2025-02-26 03:53:29,706 | INFO     | pid: 3942704
[2025-02-25 19:53:42] 2025-02-26 03:53:29,706 | INFO     | pgrp: 3942704
[2025-02-25 19:53:42] 2025-02-26 03:53:29,706 | INFO     | corecount: 12
[2025-02-25 19:53:42] 2025-02-26 03:53:29,706 | INFO     | event service: False
[2025-02-25 19:53:42] 2025-02-26 03:53:29,706 | INFO     | sizes: {0: 2370382, 3: 2370588, 11: 2370616, 3756: 2396328, 3758: 2405263, 3759: 2405319, 3762: 2405617}
[2025-02-25 19:53:42] 2025-02-26 03:53:29,706 | INFO     | --------------------------------------------------
[2025-02-25 19:53:42] 2025-02-26 03:53:29,706 | INFO     | 
[2025-02-25 19:53:42] 2025-02-26 03:53:29,706 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-02-25 19:53:42] 2025-02-26 03:53:29,718 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-25 19:53:42] 2025-02-26 03:53:29,719 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-25 19:53:42] 2025-02-26 03:53:29,719 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-25 19:53:42] 2025-02-26 03:53:29,719 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-25 19:53:42] 2025-02-26 03:53:29,719 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-25 19:53:42] 2025-02-26 03:53:29,719 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-25 19:53:42] 2025-02-26 03:53:29,719 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-25 19:53:42] 2025-02-26 03:53:29,719 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-25 19:53:42] 2025-02-26 03:53:29,719 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-25 19:53:42] 2025-02-26 03:53:29,719 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-25 19:53:42] 2025-02-26 03:53:29,719 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-25 19:53:42] 2025-02-26 03:53:29,719 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-25 19:53:42] 2025-02-26 03:53:29,719 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-25 19:53:42] 2025-02-26 03:53:29,719 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-25 19:53:42] 2025-02-26 03:53:29,719 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-25 19:53:42] 2025-02-26 03:53:29,719 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-25 19:53:42] 2025-02-26 03:53:29,719 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-25 19:53:42] 2025-02-26 03:53:29,719 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-25 19:53:42] 2025-02-26 03:53:29,719 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-25 19:53:42] 2025-02-26 03:53:29,720 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-25 19:53:42] 2025-02-26 03:53:29,720 | INFO     | job 6531002307 has completed (purged errors)
[2025-02-25 19:53:42] 2025-02-26 03:53:29,720 | INFO     | overall cleanup function is called
[2025-02-25 19:53:42] 2025-02-26 03:53:29,976 | WARNING  | process 3942704 can no longer be monitored (due to stat problems) - aborting
[2025-02-25 19:53:42] 2025-02-26 03:53:30,106 | INFO     | using path: /home/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-02-25 19:53:42] 2025-02-26 03:53:30,107 | INFO     | using path: /home/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-02-25 19:53:42] 2025-02-26 03:53:30,108 | INFO     | skipping file size check of payload stdout file (/home/boinc/slots/0/PanDA_Pilot-6531002307/payload.stdout) since it has not been created yet
[2025-02-25 19:53:42] 2025-02-26 03:53:30,108 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-02-25 19:53:42] 2025-02-26 03:53:30,117 | INFO     | sufficient remaining disk space (1311568297984 B)
[2025-02-25 19:53:42] 2025-02-26 03:53:30,118 | WARNING  | skipping size check of workdir since it has not been created yet
[2025-02-25 19:53:42] 2025-02-26 03:53:30,118 | INFO     | output file size check: skipping output file /home/boinc/slots/0/PanDA_Pilot-6531002307/HITS.43401171._001548.pool.root.1 since it does not exist
[2025-02-25 19:53:42] 2025-02-26 03:53:30,196 | INFO     | number of running child processes to parent process 3942704: 1
[2025-02-25 19:53:42] 2025-02-26 03:53:30,196 | INFO     | maximum number of monitored processes: 6
[2025-02-25 19:53:42] 2025-02-26 03:53:30,197 | INFO     | aborting job monitoring since job object (job id=6531002307) has expired
[2025-02-25 19:53:42] 2025-02-26 03:53:30,726 | INFO     | --- collectZombieJob: --- 10, [3942704]
[2025-02-25 19:53:42] 2025-02-26 03:53:30,726 | INFO     | zombie collector waiting for pid 3942704
[2025-02-25 19:53:42] 2025-02-26 03:53:30,727 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-25 19:53:42] 2025-02-26 03:53:30,727 | INFO     | collected zombie processes
[2025-02-25 19:53:42] 2025-02-26 03:53:30,727 | INFO     | will attempt to kill all subprocesses of pid=3942704
[2025-02-25 19:53:42] 2025-02-26 03:53:30,809 | INFO     | process IDs to be killed: [3942704] (in reverse order)
[2025-02-25 19:53:42] 2025-02-26 03:53:30,868 | WARNING  | found no corresponding commands to process id(s)
[2025-02-25 19:53:42] 2025-02-26 03:53:30,869 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-25 19:53:42] 2025-02-26 03:53:30,875 | INFO     | did not find any defunct processes belonging to 3942704
[2025-02-25 19:53:42] 2025-02-26 03:53:30,880 | INFO     | did not find any defunct processes belonging to 3942704
[2025-02-25 19:53:42] 2025-02-26 03:53:30,880 | INFO     | ready for new job
[2025-02-25 19:53:42] 2025-02-26 03:53:30,880 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-25 19:53:42] 2025-02-26 03:53:30,881 | INFO     | **************************************
[2025-02-25 19:53:42] 2025-02-26 03:53:30,881 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-25 19:53:42] 2025-02-26 03:53:30,881 | INFO     | **************************************
[2025-02-25 19:53:42] 2025-02-26 03:53:30,881 | INFO     | 
[2025-02-25 19:53:42] 2025-02-26 03:53:30,883 | INFO     | architecture information:
[2025-02-25 19:53:42] 2025-02-26 03:53:30,883 | INFO     | executing command: cat /etc/os-release
[2025-02-25 19:53:42] 2025-02-26 03:53:30,892 | INFO     | cat /etc/os-release:
[2025-02-25 19:53:42] NAME="CentOS Linux"
[2025-02-25 19:53:42] VERSION="7 (Core)"
[2025-02-25 19:53:42] ID="centos"
[2025-02-25 19:53:42] ID_LIKE="rhel fedora"
[2025-02-25 19:53:42] VERSION_ID="7"
[2025-02-25 19:53:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-25 19:53:42] ANSI_COLOR="0;31"
[2025-02-25 19:53:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-25 19:53:42] HOME_URL="https://www.centos.org/"
[2025-02-25 19:53:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-25 19:53:42] 
[2025-02-25 19:53:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-25 19:53:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-25 19:53:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-25 19:53:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-25 19:53:42] 
[2025-02-25 19:53:42] 2025-02-26 03:53:30,892 | INFO     | **************************************
[2025-02-25 19:53:42] 2025-02-26 03:53:31,394 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-02-25 19:53:42] 2025-02-26 03:53:31,405 | INFO     | sufficient remaining disk space (1311556763648 B)
[2025-02-25 19:53:42] 2025-02-26 03:53:31,405 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-25 19:53:42] 2025-02-26 03:53:31,405 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-25 19:53:42] 2025-02-26 03:53:31,405 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-25 19:53:42] 2025-02-26 03:53:31,405 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-25 19:53:42] 2025-02-26 03:53:31,406 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-25 19:53:42] 2025-02-26 03:53:31,406 | INFO     | aborting loop
[2025-02-25 19:53:42] 2025-02-26 03:53:31,494 | INFO     | found 0 job(s) in 20 queues
[2025-02-25 19:53:42] 2025-02-26 03:53:31,494 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-25 19:53:42] 2025-02-26 03:53:31,494 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-25 19:53:42] 2025-02-26 03:53:31,720 | INFO     | all data control threads have been joined
[2025-02-25 19:53:42] 2025-02-26 03:53:32,410 | INFO     | [job] retrieve thread has finished
[2025-02-25 19:53:42] 2025-02-26 03:53:32,411 | INFO     | [job] queue monitor thread has finished
[2025-02-25 19:53:42] 2025-02-26 03:53:32,411 | INFO     | [job] job monitor thread has finished
[2025-02-25 19:53:42] 2025-02-26 03:53:32,524 | INFO     | all payload control threads have been joined
[2025-02-25 19:53:42] 2025-02-26 03:53:32,608 | INFO     | [payload] failed_post thread has finished
[2025-02-25 19:53:42] 2025-02-26 03:53:32,652 | INFO     | [job] validate thread has finished
[2025-02-25 19:53:42] 2025-02-26 03:53:32,722 | INFO     | [data] control thread has finished
[2025-02-25 19:53:42] 2025-02-26 03:53:32,738 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-25 19:53:42] 2025-02-26 03:53:32,932 | INFO     | [payload] execute_payloads thread has finished
[2025-02-25 19:53:42] 2025-02-26 03:53:33,104 | INFO     | all job control threads have been joined
[2025-02-25 19:53:42] 2025-02-26 03:53:33,212 | INFO     | [job] create_data_payload thread has finished
[2025-02-25 19:53:42] 2025-02-26 03:53:33,411 | INFO     | [data] copytool_out thread has finished
[2025-02-25 19:53:42] 2025-02-26 03:53:33,486 | INFO     | [payload] validate_post thread has finished
[2025-02-25 19:53:42] 2025-02-26 03:53:33,512 | INFO     | [payload] validate_pre thread has finished
[2025-02-25 19:53:42] 2025-02-26 03:53:33,529 | INFO     | [payload] control thread has finished
[2025-02-25 19:53:42] 2025-02-26 03:53:33,543 | INFO     | [data] copytool_in thread has finished
[2025-02-25 19:53:42] 2025-02-26 03:53:33,868 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-25 19:53:42] 2025-02-26 03:53:34,109 | INFO     | [job] control thread has finished
[2025-02-25 19:53:42] 2025-02-26 03:53:36,743 | INFO     | [data] queue_monitor thread has finished
[2025-02-25 19:53:42] 2025-02-26 03:53:37,654 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139999559415616)>', '<ExcThread(monitor, started 139998879803136)>']
[2025-02-25 19:53:42] 2025-02-26 03:53:38,523 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-25 19:53:42] 2025-02-26 03:53:38,523 | INFO     | [monitor] control thread has ended
[2025-02-25 19:53:42] 2025-02-26 03:53:42,679 | INFO     | all workflow threads have been joined
[2025-02-25 19:53:42] 2025-02-26 03:53:42,679 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-25 19:53:42] 2025-02-26 03:53:42,680 | INFO     | traces error code: 0
[2025-02-25 19:53:42] 2025-02-26 03:53:42,680 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-25 19:53:42] 2025-02-26 03:53:42,779 [wrapper] ==== pilot stdout END ====
[2025-02-25 19:53:42] 2025-02-26 03:53:42,781 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-25 19:53:42] 2025-02-26 03:53:42,783 [wrapper] pilotpid: 3936300
[2025-02-25 19:53:42] 2025-02-26 03:53:42,784 [wrapper] Pilot exit status: 0
[2025-02-25 19:53:42] 2025-02-26 03:53:42,792 [wrapper] pandaids: 6531002307
[2025-02-25 19:53:42] 2025-02-26 03:53:42,830 [wrapper] cleanup supervisor_pilot 4137097 3936301
[2025-02-25 19:53:42] 2025-02-26 03:53:42,832 [wrapper] Test setup, not cleaning
[2025-02-25 19:53:42] 2025-02-26 03:53:42,835 [wrapper] apfmon messages muted
[2025-02-25 19:53:42] 2025-02-26 03:53:42,837 [wrapper] ==== wrapper stdout END ====
[2025-02-25 19:53:42] 2025-02-26 03:53:42,838 [wrapper] ==== wrapper stderr END ====
[2025-02-25 19:53:42]  *** Error codes and diagnostics ***
[2025-02-25 19:53:42]     "exeErrorCode": 0,
[2025-02-25 19:53:42]     "exeErrorDiag": "",
[2025-02-25 19:53:42]     "pilotErrorCode": 0,
[2025-02-25 19:53:42]     "pilotErrorDiag": "",
[2025-02-25 19:53:42]  *** Listing of results directory ***
[2025-02-25 19:53:42] total 428016
[2025-02-25 19:53:42] -rw-r--r--. 1 boinc boinc    491065 Feb 25 13:07 pilot3.tar.gz
[2025-02-25 19:53:42] -rw-r--r--. 1 boinc boinc      5118 Feb 25 13:38 queuedata.json
[2025-02-25 19:53:42] -rwx------. 1 boinc boinc     35865 Feb 25 13:38 runpilot2-wrapper.sh
[2025-02-25 19:53:42] -rw-r--r--. 1 boinc boinc       100 Feb 25 18:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-25 19:53:42] -rwxr-xr-x. 1 boinc boinc      7986 Feb 25 18:50 run_atlas
[2025-02-25 19:53:42] -rw-r--r--. 1 boinc boinc       105 Feb 25 18:50 job.xml
[2025-02-25 19:53:42] -rw-r--r--. 1 boinc boinc      6603 Feb 25 18:50 init_data.xml
[2025-02-25 19:53:42] -rw-r--r--. 2 boinc boinc 248891281 Feb 25 18:50 EVNT.43401169._000062.pool.root.1
[2025-02-25 19:53:42] -rw-r--r--. 2 boinc boinc     17569 Feb 25 18:50 start_atlas.sh
[2025-02-25 19:53:42] drwxrwx--x. 2 boinc boinc      4096 Feb 25 18:50 shared
[2025-02-25 19:53:42] -rw-r--r--. 2 boinc boinc    503555 Feb 25 18:50 input.tar.gz
[2025-02-25 19:53:42] -rw-r--r--. 1 boinc boinc         0 Feb 25 18:50 boinc_lockfile
[2025-02-25 19:53:42] -rw-r--r--. 1 boinc boinc      2543 Feb 25 18:50 pandaJob.out
[2025-02-25 19:53:42] -rw-------. 1 boinc boinc       424 Feb 25 18:50 setup.sh.local
[2025-02-25 19:53:42] -rw-------. 1 boinc boinc    987482 Feb 25 18:50 agis_schedconf.cvmfs.json
[2025-02-25 19:53:42] -rw-------. 1 boinc boinc   1573632 Feb 25 18:50 agis_ddmendpoints.agis.ALL.json
[2025-02-25 19:53:42] drwx------. 4 boinc boinc      4096 Feb 25 18:50 pilot3
[2025-02-25 19:53:42] -rw-------. 1 boinc boinc 184122817 Feb 25 19:52 HITS.43401171._001548.pool.root.1
[2025-02-25 19:53:42] -rw-r--r--. 1 boinc boinc       529 Feb 25 19:52 boinc_task_state.xml
[2025-02-25 19:53:42] -rw-------. 1 boinc boinc      1050 Feb 25 19:53 memory_monitor_summary.json
[2025-02-25 19:53:42] -rw-------. 1 boinc boinc    348366 Feb 25 19:53 log.43401171._001548.job.log.tgz.1
[2025-02-25 19:53:42] -rw-------. 1 boinc boinc      7736 Feb 25 19:53 heartbeat.json
[2025-02-25 19:53:42] -rw-------. 1 boinc boinc        95 Feb 25 19:53 pilot_heartbeat.json
[2025-02-25 19:53:42] -rw-r--r--. 1 boinc boinc      8192 Feb 25 19:53 boinc_mmap_file
[2025-02-25 19:53:42] -rw-r--r--. 1 boinc boinc        27 Feb 25 19:53 wrapper_checkpoint.txt
[2025-02-25 19:53:42] -rw-------. 1 boinc boinc      4214 Feb 25 19:53 pilotlog.txt
[2025-02-25 19:53:42] -rw-------. 1 boinc boinc    387834 Feb 25 19:53 log.43401171._001548.job.log.1
[2025-02-25 19:53:42] -rw-------. 1 boinc boinc       357 Feb 25 19:53 output.list
[2025-02-25 19:53:42] -rw-r--r--. 1 boinc boinc       620 Feb 25 19:53 runtime_log
[2025-02-25 19:53:42] -rw-------. 1 boinc boinc    757760 Feb 25 19:53 result.tar.gz
[2025-02-25 19:53:42] -rw-r--r--. 1 boinc boinc     11144 Feb 25 19:53 runtime_log.err
[2025-02-25 19:53:42] -rw-------. 1 boinc boinc       659 Feb 25 19:53 ofRKDmToH76n9Rq4apOajLDm4fhM0noT9bVoFjIUDmoGgKDmy34e3n.diag
[2025-02-25 19:53:42] -rw-r--r--. 1 boinc boinc     22011 Feb 25 19:53 stderr.txt
[2025-02-25 19:53:42] HITS file was successfully produced:
[2025-02-25 19:53:42] -rw-------. 1 boinc boinc 184122817 Feb 25 19:52 shared/HITS.pool.root.1
[2025-02-25 19:53:42]  *** Contents of shared directory: ***
[2025-02-25 19:53:42] total 424128
[2025-02-25 19:53:42] -rw-r--r--. 2 boinc boinc 248891281 Feb 25 18:50 ATLAS.root_0
[2025-02-25 19:53:42] -rw-r--r--. 2 boinc boinc     17569 Feb 25 18:50 start_atlas.sh
[2025-02-25 19:53:42] -rw-r--r--. 2 boinc boinc    503555 Feb 25 18:50 input.tar.gz
[2025-02-25 19:53:42] -rw-------. 1 boinc boinc 184122817 Feb 25 19:52 HITS.pool.root.1
[2025-02-25 19:53:42] -rw-------. 1 boinc boinc    757760 Feb 25 19:53 result.tar.gz
19:53:44 (3932719): run_atlas exited; CPU time 26989.801715
19:53:44 (3932719): called boinc_finish(0)

</stderr_txt>
]]>

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