| Name | riQODm4pQ66nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmUXvKDmjHhqFo_1 |
| Workunit | 230527148 |
| Created | 25 Feb 2025, 20:45:34 UTC |
| Sent | 25 Feb 2025, 20:45:39 UTC |
| Report deadline | 5 Mar 2025, 20:45:39 UTC |
| Received | 26 Feb 2025, 1:00:06 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 0 (0x00000000) |
| Computer ID | 10830555 |
| Run time | 4 hours 13 min 31 sec |
| CPU time | 12 hours 31 min 49 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 47.63 GFLOPS |
| Application version | ATLAS Simulation v3.01 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 2.42 GB |
| Peak swap size | 3.08 GB |
| Peak disk usage | 850.16 MB |
Stderr output
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 15:45:59 (76524): wrapper (7.7.26015): starting 15:45:59 (76524): wrapper: running run_atlas (--nthreads 8) [2025-02-25 15:45:59] Arguments: --nthreads 8 [2025-02-25 15:45:59] Threads: 8 [2025-02-25 15:45:59] Checking for CVMFS [2025-02-25 15:45:59] Probing /cvmfs/atlas.cern.ch... OK [2025-02-25 15:45:59] Probing /cvmfs/atlas-condb.cern.ch... OK [2025-02-25 15:45:59] Running cvmfs_config stat atlas.cern.ch [2025-02-25 15:46:00] /usr/bin/cvmfs_config: line 944: cd: /cvmfs/ligo.storage.igwn.org: Permission denied [2025-02-25 15:46:00] [2025-02-25 15:46:00] CVMFS is ok [2025-02-25 15:46:00] Efficiency of ATLAS tasks can be improved by the following measure(s): [2025-02-25 15:46:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io. [2025-02-25 15:46:00] Further information can be found at the LHC@home message board. [2025-02-25 15:46:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 [2025-02-25 15:46:00] Checking for apptainer binary... [2025-02-25 15:46:00] Using apptainer found in PATH at /usr/bin/apptainer [2025-02-25 15:46:00] Running /usr/bin/apptainer --version [2025-02-25 15:46:00] apptainer version 1.3.2-1.el7 [2025-02-25 15:46:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname [2025-02-25 15:46:03] c-212-15.aglt2.org [2025-02-25 15:46:03] apptainer works [2025-02-25 15:46:03] Set ATHENA_PROC_NUMBER=8 [2025-02-25 15:46:03] Set ATHENA_CORE_NUMBER=8 [2025-02-25 15:46:03] Starting ATLAS job with PandaID=6525187773 [2025-02-25 15:46:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh [2025-02-25 19:59:27] *** The last 200 lines of the pilot log: *** [2025-02-25 19:59:27] File "/tmp/boinchome/slots/5/pilot3/pilot/control/data.py", line 765, in create_log [2025-02-25 19:59:27] user.remove_redundant_files(workdir, piloterrors=piloterrors, debugmode=debugmode) [2025-02-25 19:59:27] File "/tmp/boinchome/slots/5/pilot3/pilot/user/atlas/common.py", line 2118, in remove_redundant_files [2025-02-25 19:59:27] list_work_dir(workdir) [2025-02-25 19:59:27] File "/tmp/boinchome/slots/5/pilot3/pilot/user/atlas/common.py", line 2064, in list_work_dir [2025-02-25 19:59:27] _, stdout, stderr = execute(cmd) [2025-02-25 19:59:27] File "/tmp/boinchome/slots/5/pilot3/pilot/util/container.py", line 85, in execute [2025-02-25 19:59:27] process = subprocess.Popen( [2025-02-25 19:59:27] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__ [2025-02-25 19:59:27] self._execute_child(args, executable, preexec_fn, close_fds, [2025-02-25 19:59:27] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child [2025-02-25 19:59:27] raise child_exception_type(errno_num, err_msg, err_filename) [2025-02-25 19:59:27] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash' [2025-02-25 19:59:27] [2025-02-25 19:59:27] None [2025-02-25 19:59:27] exception has been put in bucket queue belonging to thread 'copytool_out' [2025-02-25 19:59:27] setting graceful stop in 10 s since there is no point in continuing [2025-02-25 19:59:27] 2025-02-26 00:57:04,464 | WARNING | thread 'copytool_out' received an exception from bucket: [Errno 107] Transport endpoint is not connected: '/bin/bash' [2025-02-25 19:59:27] 2025-02-26 00:57:05,423 | INFO | monitor loop #976: job 0:6525187773 is in state 'failed' [2025-02-25 19:59:27] 2025-02-26 00:57:05,423 | INFO | will abort job monitoring soon since job state=failed (job is still in queue) [2025-02-25 19:59:27] 2025-02-26 00:57:07,926 | INFO | monitor loop #977: job 0:6525187773 is in state 'failed' [2025-02-25 19:59:27] 2025-02-26 00:57:07,926 | INFO | will abort job monitoring soon since job state=failed (job is still in queue) [2025-02-25 19:59:27] 2025-02-26 00:57:10,429 | INFO | monitor loop #978: job 0:6525187773 is in state 'failed' [2025-02-25 19:59:27] 2025-02-26 00:57:10,430 | INFO | will abort job monitoring soon since job state=failed (job is still in queue) [2025-02-25 19:59:27] 2025-02-26 00:57:12,933 | INFO | monitor loop #979: job 0:6525187773 is in state 'failed' [2025-02-25 19:59:27] 2025-02-26 00:57:12,933 | INFO | will abort job monitoring soon since job state=failed (job is still in queue) [2025-02-25 19:59:27] 2025-02-26 00:57:14,331 | WARNING | aborting monitor loop since graceful_stop has been set (timing out remaining threads) [2025-02-25 19:59:27] 2025-02-26 00:57:14,331 | WARNING | job:job_monitor:received graceful stop - abort after this iteration [2025-02-25 19:59:27] 2025-02-26 00:57:14,331 | INFO | found 1 job(s) in 20 queues [2025-02-25 19:59:27] 2025-02-26 00:57:14,332 | INFO | aborting loop [2025-02-25 19:59:27] 2025-02-26 00:57:14,332 | INFO | aborting job 6525187773 [2025-02-25 19:59:27] 2025-02-26 00:57:14,332 | WARNING | could not find signal name for signal number None - using SIGTERM [2025-02-25 19:59:27] 2025-02-26 00:57:14,365 | WARNING | pilot monitor received instruction that args.graceful_stop has been set [2025-02-25 19:59:27] 2025-02-26 00:57:14,366 | INFO | job 6525187773 has state=failed [2025-02-25 19:59:27] 2025-02-26 00:57:14,366 | WARNING | will wait for a maximum of 300 s for threads to finish [2025-02-25 19:59:27] 2025-02-26 00:57:14,366 | INFO | preparing for final server update for job 6525187773 in state='failed' [2025-02-25 19:59:27] 2025-02-26 00:57:14,366 | WARNING | job_aborted has been set - aborting pilot monitoring [2025-02-25 19:59:27] 2025-02-26 00:57:14,366 | INFO | [monitor] control thread has ended [2025-02-25 19:59:27] 2025-02-26 00:57:14,974 | INFO | all job control threads have been joined [2025-02-25 19:59:27] 2025-02-26 00:57:15,206 | INFO | all data control threads have been joined [2025-02-25 19:59:27] 2025-02-26 00:57:15,337 | INFO | [job] job monitor thread has finished [2025-02-25 19:59:27] 2025-02-26 00:57:15,422 | INFO | all payload control threads have been joined [2025-02-25 19:59:27] 2025-02-26 00:57:15,682 | INFO | [payload] run_realtimelog thread has finished [2025-02-25 19:59:27] 2025-02-26 00:57:15,772 | INFO | [payload] validate_post thread has finished [2025-02-25 19:59:27] 2025-02-26 00:57:15,979 | INFO | [job] control thread has finished [2025-02-25 19:59:27] 2025-02-26 00:57:16,092 | INFO | [job] retrieve thread has finished [2025-02-25 19:59:27] 2025-02-26 00:57:16,125 | INFO | [payload] failed_post thread has finished [2025-02-25 19:59:27] 2025-02-26 00:57:16,211 | INFO | [data] control thread has finished [2025-02-25 19:59:27] 2025-02-26 00:57:16,424 | INFO | [payload] control thread has finished [2025-02-25 19:59:27] 2025-02-26 00:57:16,458 | WARNING | data:queue_monitoring:received graceful stop - abort after this iteration [2025-02-25 19:59:27] 2025-02-26 00:57:16,468 | INFO | [job] create_data_payload thread has finished [2025-02-25 19:59:27] 2025-02-26 00:57:16,520 | INFO | [data] copytool_in thread has finished [2025-02-25 19:59:27] 2025-02-26 00:57:16,537 | INFO | [payload] validate_pre thread has finished [2025-02-25 19:59:27] 2025-02-26 00:57:16,572 | INFO | [job] validate thread has finished [2025-02-25 19:59:27] 2025-02-26 00:57:19,768 | INFO | [payload] execute_payloads thread has finished [2025-02-25 19:59:27] 2025-02-26 00:57:20,467 | INFO | [data] queue_monitor thread has finished [2025-02-25 19:59:27] 2025-02-26 00:57:20,761 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:57:22,771 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:57:24,781 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:57:26,791 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:57:28,801 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:57:30,811 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:57:32,821 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:57:34,831 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:57:36,841 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:57:38,851 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:57:40,861 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:57:42,867 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:57:44,877 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:57:46,887 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:57:48,898 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:57:50,908 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:57:52,913 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:57:54,918 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:57:56,924 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:57:58,934 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:58:00,946 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:58:02,956 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:58:04,966 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:58:06,977 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:58:08,987 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:58:10,993 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:58:13,003 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:58:15,013 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:58:17,023 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:58:19,033 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:58:21,043 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:58:23,053 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:58:25,063 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:58:27,073 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:58:29,083 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:58:31,093 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:58:33,103 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:58:35,113 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:58:37,123 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:58:39,134 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:58:41,145 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:58:43,155 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:58:45,165 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:58:47,175 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:58:49,186 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:58:51,197 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:58:53,207 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:58:55,217 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:58:57,227 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:58:59,236 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:59:01,241 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:59:03,246 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:59:05,256 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:59:07,266 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:59:09,276 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:59:09,381 | INFO | proceeding with final server update [2025-02-25 19:59:27] 2025-02-26 00:59:09,382 | INFO | this job has now completed (state=failed) [2025-02-25 19:59:27] 2025-02-26 00:59:09,382 | INFO | pilot will not update the server (heartbeat message will be written to file) [2025-02-25 19:59:27] 2025-02-26 00:59:09,382 | INFO | log transfer has not been attempted: IN_PROGRESS [2025-02-25 19:59:27] 2025-02-26 00:59:09,382 | INFO | job 6525187773 has state 'failed' - writing heartbeat [2025-02-25 19:59:27] 2025-02-26 00:59:09,383 | INFO | payload/TRF did not report the number of read events [2025-02-25 19:59:27] 2025-02-26 00:59:09,386 | INFO | executing command: lscpu [2025-02-25 19:59:27] File "/tmp/boinchome/slots/5/pilot3/pilot/common/exception.py", line 466, in run [2025-02-25 19:59:27] self._target(**self.kwargs) [2025-02-25 19:59:27] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 2641, in queue_monitor [2025-02-25 19:59:27] update_server(job, args) [2025-02-25 19:59:27] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 2690, in update_server [2025-02-25 19:59:27] send_state(job, args, job.state, metadata=metadata) [2025-02-25 19:59:27] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 430, in send_state [2025-02-25 19:59:27] data = get_data_structure(job, state, args, xml=xml, metadata=metadata) [2025-02-25 19:59:27] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 757, in get_data_structure [2025-02-25 19:59:27] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present [2025-02-25 19:59:27] File "/tmp/boinchome/slots/5/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores [2025-02-25 19:59:27] ec, stdout = lscpu() [2025-02-25 19:59:27] File "/tmp/boinchome/slots/5/pilot3/pilot/util/workernode.py", line 333, in lscpu [2025-02-25 19:59:27] ec, stdout, _ = execute(cmd) [2025-02-25 19:59:27] File "/tmp/boinchome/slots/5/pilot3/pilot/util/container.py", line 85, in execute [2025-02-25 19:59:27] process = subprocess.Popen( [2025-02-25 19:59:27] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__ [2025-02-25 19:59:27] self._execute_child(args, executable, preexec_fn, close_fds, [2025-02-25 19:59:27] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child [2025-02-25 19:59:27] raise child_exception_type(errno_num, err_msg, err_filename) [2025-02-25 19:59:27] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(107, 'Transport endpoint is not connected'), <traceback object at 0x7f8cdf5e1840>) [2025-02-25 19:59:27] Traceback (most recent call last): [2025-02-25 19:59:27] File "/tmp/boinchome/slots/5/pilot3/pilot/common/exception.py", line 466, in run [2025-02-25 19:59:27] self._target(**self.kwargs) [2025-02-25 19:59:27] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 2641, in queue_monitor [2025-02-25 19:59:27] update_server(job, args) [2025-02-25 19:59:27] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 2690, in update_server [2025-02-25 19:59:27] send_state(job, args, job.state, metadata=metadata) [2025-02-25 19:59:27] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 430, in send_state [2025-02-25 19:59:27] data = get_data_structure(job, state, args, xml=xml, metadata=metadata) [2025-02-25 19:59:27] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 757, in get_data_structure [2025-02-25 19:59:27] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present [2025-02-25 19:59:27] File "/tmp/boinchome/slots/5/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores [2025-02-25 19:59:27] ec, stdout = lscpu() [2025-02-25 19:59:27] File "/tmp/boinchome/slots/5/pilot3/pilot/util/workernode.py", line 333, in lscpu [2025-02-25 19:59:27] ec, stdout, _ = execute(cmd) [2025-02-25 19:59:27] File "/tmp/boinchome/slots/5/pilot3/pilot/util/container.py", line 85, in execute [2025-02-25 19:59:27] process = subprocess.Popen( [2025-02-25 19:59:27] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__ [2025-02-25 19:59:27] self._execute_child(args, executable, preexec_fn, close_fds, [2025-02-25 19:59:27] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child [2025-02-25 19:59:27] raise child_exception_type(errno_num, err_msg, err_filename) [2025-02-25 19:59:27] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash' [2025-02-25 19:59:27] [2025-02-25 19:59:27] None [2025-02-25 19:59:27] exception has been put in bucket queue belonging to thread 'queue_monitor' [2025-02-25 19:59:27] setting graceful stop in 10 s since there is no point in continuing [2025-02-25 19:59:27] 2025-02-26 00:59:11,286 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:59:13,296 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:59:15,307 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:59:17,317 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:59:19,327 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140243182835520)>', '<ExcThread(queue_monitor, started 140242082326272)>'] [2025-02-25 19:59:27] 2025-02-26 00:59:21,334 | INFO | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 140243182835520)>']) [2025-02-25 19:59:27] 2025-02-26 00:59:26,354 | INFO | all workflow threads have been joined [2025-02-25 19:59:27] 2025-02-26 00:59:26,354 | INFO | end of generic workflow (traces error code: 0) [2025-02-25 19:59:27] 2025-02-26 00:59:26,355 | INFO | traces error code: 0 [2025-02-25 19:59:27] 2025-02-26 00:59:26,355 | INFO | pilot has finished (exit code=0, shell exit code=0) [2025-02-25 19:59:27] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2025-02-25 19:59:27] ==== pilot stdout END ==== [2025-02-25 19:59:27] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2025-02-25 19:59:27] ==== wrapper stdout RESUME ==== [2025-02-25 19:59:27] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2025-02-25 19:59:27] pilotpid: 91779 [2025-02-25 19:59:27] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2025-02-25 19:59:27] Pilot exit status: 139 [2025-02-25 19:59:27] ./runpilot2-wrapper.sh: line 1015: /usr/bin/cat: Transport endpoint is not connected [2025-02-25 19:59:27] ./runpilot2-wrapper.sh: line 1015: xargs: command not found [2025-02-25 19:59:27] ./runpilot2-wrapper.sh: line 1015: /usr/bin/cut: Transport endpoint is not connected [2025-02-25 19:59:27] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2025-02-25 19:59:27] pandaids: [2025-02-25 19:59:27] ./runpilot2-wrapper.sh: line 516: /usr/bin/ps: Transport endpoint is not connected [2025-02-25 19:59:27] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2025-02-25 19:59:27] No supervise_pilot CHILD process found [2025-02-25 19:59:27] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2025-02-25 19:59:27] Test setup, not cleaning [2025-02-25 19:59:27] ./runpilot2-wrapper.sh: line 534: /usr/bin/date: Transport endpoint is not connected [2025-02-25 19:59:27] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2025-02-25 19:59:27] apfmon messages muted [2025-02-25 19:59:27] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2025-02-25 19:59:27] ==== wrapper stdout END ==== [2025-02-25 19:59:27] ./runpilot2-wrapper.sh: line 10: /usr/bin/date: Transport endpoint is not connected [2025-02-25 19:59:27] ==== wrapper stderr END ==== [2025-02-25 19:59:27] *** Error codes and diagnostics *** [2025-02-25 19:59:27] *** Listing of results directory *** [2025-02-25 19:59:27] total 340712 [2025-02-25 19:59:27] -rw-r--r-- 1 boincer umatlas 491065 Feb 23 07:59 pilot3.tar.gz [2025-02-25 19:59:27] -rwx------ 1 boincer umatlas 35865 Feb 23 08:04 runpilot2-wrapper.sh [2025-02-25 19:59:27] -rw-r--r-- 1 boincer umatlas 5118 Feb 23 08:04 queuedata.json [2025-02-25 19:59:27] -rw-r--r-- 1 boincer umatlas 100 Feb 25 15:45 wrapper_26015_x86_64-pc-linux-gnu [2025-02-25 19:59:27] -rwxr-xr-x 1 boincer umatlas 7986 Feb 25 15:45 run_atlas [2025-02-25 19:59:27] -rw-r--r-- 1 boincer umatlas 105 Feb 25 15:45 job.xml [2025-02-25 19:59:27] -rw-r--r-- 2 boincer umatlas 17569 Feb 25 15:45 start_atlas.sh [2025-02-25 19:59:27] drwxrwx--x 2 boincer umatlas 4096 Feb 25 15:45 shared [2025-02-25 19:59:27] -rw-r--r-- 2 boincer umatlas 503555 Feb 25 15:45 input.tar.gz [2025-02-25 19:59:27] -rw-r--r-- 2 boincer umatlas 342121211 Feb 25 15:45 EVNT.43092757._002037.pool.root.1 [2025-02-25 19:59:27] -rw-r--r-- 1 boincer umatlas 0 Feb 25 15:45 boinc_lockfile [2025-02-25 19:59:27] -rw-r--r-- 1 boincer umatlas 2549 Feb 25 15:46 pandaJob.out [2025-02-25 19:59:27] -rw------- 1 boincer umatlas 424 Feb 25 15:46 setup.sh.local [2025-02-25 19:59:27] -rw------- 1 boincer umatlas 987490 Feb 25 15:46 agis_schedconf.cvmfs.json [2025-02-25 19:59:27] -rw------- 1 boincer umatlas 1573632 Feb 25 15:46 agis_ddmendpoints.agis.ALL.json [2025-02-25 19:59:27] drwx------ 4 boincer umatlas 4096 Feb 25 15:46 pilot3 [2025-02-25 19:59:27] -rw------- 1 boincer umatlas 896 Feb 25 19:23 heartbeat.json [2025-02-25 19:59:27] -rw------- 1 boincer umatlas 95 Feb 25 19:56 pilot_heartbeat.json [2025-02-25 19:59:27] -rw------- 1 boincer umatlas 1084 Feb 25 19:57 memory_monitor_summary.json [2025-02-25 19:59:27] -rw-r--r-- 1 boincer umatlas 530 Feb 25 19:57 boinc_task_state.xml [2025-02-25 19:59:27] drwxrwx--- 2 boincer umatlas 4096 Feb 25 19:57 PanDA_Pilot-6525187773 [2025-02-25 19:59:27] -rw-r--r-- 1 boincer umatlas 6303 Feb 25 19:57 init_data.xml [2025-02-25 19:59:27] -rw------- 1 boincer umatlas 1487377 Feb 25 19:59 pilotlog.txt [2025-02-25 19:59:27] -rw------- 1 boincer umatlas 1513096 Feb 25 19:59 log.43205094._039399.job.log.1 [2025-02-25 19:59:27] -rw-r--r-- 1 boincer umatlas 428 Feb 25 19:59 runtime_log [2025-02-25 19:59:27] -rw------- 1 boincer umatlas 644 Feb 25 19:59 riQODm4pQ66nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmUXvKDmjHhqFo.diag [2025-02-25 19:59:27] -rw-r--r-- 1 boincer umatlas 28 Feb 25 19:59 wrapper_checkpoint.txt [2025-02-25 19:59:27] -rw-r--r-- 1 boincer umatlas 8192 Feb 25 19:59 boinc_mmap_file [2025-02-25 19:59:27] -rw-r--r-- 1 boincer umatlas 11303 Feb 25 19:59 runtime_log.err [2025-02-25 19:59:27] -rw-r--r-- 1 boincer umatlas 27580 Feb 25 19:59 stderr.txt [2025-02-25 19:59:27] No HITS result produced [2025-02-25 19:59:27] *** Contents of shared directory: *** [2025-02-25 19:59:27] total 334616 [2025-02-25 19:59:27] -rw-r--r-- 2 boincer umatlas 17569 Feb 25 15:45 start_atlas.sh [2025-02-25 19:59:27] -rw-r--r-- 2 boincer umatlas 503555 Feb 25 15:45 input.tar.gz [2025-02-25 19:59:27] -rw-r--r-- 2 boincer umatlas 342121211 Feb 25 15:45 ATLAS.root_0 19:59:29 (76524): run_atlas exited; CPU time 44060.309951 19:59:29 (76524): called boinc_finish(0) </stderr_txt> <message> upload failure: <file_xfer_error> <file_name>riQODm4pQ66nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmUXvKDmjHhqFo_1_r1542522777_ATLAS_result</file_name> <error_code>-161 (not found)</error_code> </file_xfer_error> </message> ]]>
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