Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:40:32 (23511): wrapper (7.7.26015): starting
11:40:32 (23511): wrapper: running run_atlas (--nthreads 12)
[2025-02-25 11:40:32] Arguments: --nthreads 12
[2025-02-25 11:40:32] Threads: 12
[2025-02-25 11:40:32] Checking for CVMFS
[2025-02-25 11:40:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-02-25 11:40:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-02-25 11:40:33] Running cvmfs_config stat atlas.cern.ch
[2025-02-25 11:40:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-02-25 11:40:33] 2.11.2.0 3563 296113 192640 143045 2 56 12728579 20275201 1 130560 0 23920885 99.991 6691223 45236 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-02-25 11:40:33] CVMFS is ok
[2025-02-25 11:40:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-25 11:40:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-25 11:40:33] Further information can be found at the LHC@home message board.
[2025-02-25 11:40:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-25 11:40:33] Checking for apptainer binary...
[2025-02-25 11:40:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-02-25 11:40:33] Running /usr/bin/apptainer --version
[2025-02-25 11:40:33] apptainer version 1.3.2-1.el7
[2025-02-25 11:40:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-25 11:40:34] c-205-13.aglt2.org
[2025-02-25 11:40:34] apptainer works
[2025-02-25 11:40:34] Set ATHENA_PROC_NUMBER=12
[2025-02-25 11:40:34] Set ATHENA_CORE_NUMBER=12
[2025-02-25 11:40:34] Starting ATLAS job with PandaID=6530518340
[2025-02-25 11:40:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-25 13:01:56]  *** The last 200 lines of the pilot log: ***
[2025-02-25 13:01:56]  lfn=log.43401171._001104.job.log.tgz.1
[2025-02-25 13:01:56]  mtime=0
[2025-02-25 13:01:56]  protocol_id=None
[2025-02-25 13:01:56]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-02-25 13:01:56]  replicas=None
[2025-02-25 13:01:56]  scope=mc23_13p6TeV
[2025-02-25 13:01:56]  status=None
[2025-02-25 13:01:56]  status_code=0
[2025-02-25 13:01:56]  storage_token=
[2025-02-25 13:01:56]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6530518340/log.43401171._001104.job.log.tgz.1
[2025-02-25 13:01:56]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e4/8e/log.43401171._001104.job.log.tgz.1
[2025-02-25 13:01:56]  workdir=None
[2025-02-25 13:01:56] ]
[2025-02-25 13:01:56] 2025-02-25 18:01:33,799 | INFO     | transferring file log.43401171._001104.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6530518340/log.43401171._001104.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-02-25 13:01:56] 2025-02-25 18:01:33,799 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6530518340/log.43401171._001104.job.log.tgz.1 /tmp/boinchome/slots/0/log.43401171._001104.job
[2025-02-25 13:01:56] 2025-02-25 18:01:33,821 | INFO     | adding to output.list: log.43401171._001104.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e4/8e/log.43401171._001104.job.log.tg
[2025-02-25 13:01:56] 2025-02-25 18:01:33,822 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-02-25 13:01:56] 2025-02-25 18:01:33,823 | INFO     | summary of transferred files:
[2025-02-25 13:01:56] 2025-02-25 18:01:33,823 | INFO     |  -- lfn=log.43401171._001104.job.log.tgz.1, status_code=0, status=transferred
[2025-02-25 13:01:56] 2025-02-25 18:01:33,823 | INFO     | stage-out finished correctly
[2025-02-25 13:01:56] 2025-02-25 18:01:36,302 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-02-25 13:01:56] 2025-02-25 18:01:36,663 | WARNING  | process 2047 can no longer be monitored (due to stat problems) - aborting
[2025-02-25 13:01:56] 2025-02-25 18:01:36,663 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6530518340/memory_monitor_summary.json (trf name=prmon)
[2025-02-25 13:01:56] 2025-02-25 18:01:36,724 | INFO     | number of running child processes to parent process 2047: 1
[2025-02-25 13:01:56] 2025-02-25 18:01:36,724 | INFO     | maximum number of monitored processes: 6
[2025-02-25 13:01:56] 2025-02-25 18:01:37,437 | INFO     | job 6530518340 has state=finished
[2025-02-25 13:01:56] 2025-02-25 18:01:37,437 | INFO     | preparing for final server update for job 6530518340 in state='finished'
[2025-02-25 13:01:56] 2025-02-25 18:01:37,443 | INFO     | this job has now completed (state=finished)
[2025-02-25 13:01:56] 2025-02-25 18:01:37,443 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-02-25 13:01:56] 2025-02-25 18:01:37,443 | INFO     | log transfer has been attempted: DONE
[2025-02-25 13:01:56] 2025-02-25 18:01:37,443 | INFO     | job 6530518340 has finished - writing final server update
[2025-02-25 13:01:56] 2025-02-25 18:01:37,444 | INFO     | total number of processed events: 400 (read)
[2025-02-25 13:01:56] 2025-02-25 18:01:37,445 | INFO     | executing command: lscpu
[2025-02-25 13:01:56] 2025-02-25 18:01:37,472 | INFO     | found 12 cores (6 cores per socket, 2 sockets)
[2025-02-25 13:01:56] 2025-02-25 18:01:37,485 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-02-25 13:01:56] 2025-02-25 18:01:39,228 | INFO     | monitor loop #354: job 0:6530518340 is in state 'finished'
[2025-02-25 13:01:56] 2025-02-25 18:01:39,228 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-25 13:01:56] 2025-02-25 18:01:41,730 | INFO     | monitor loop #355: job 0:6530518340 is in state 'finished'
[2025-02-25 13:01:56] 2025-02-25 18:01:41,730 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-25 13:01:56] 2025-02-25 18:01:42,410 | INFO     | CPU arch script returned: x86-64-v2
[2025-02-25 13:01:56] 2025-02-25 18:01:42,410 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6530518340/memory_monitor_summary.json (trf name=prmon)
[2025-02-25 13:01:56] 2025-02-25 18:01:42,411 | INFO     | extracted standard info from prmon json
[2025-02-25 13:01:56] 2025-02-25 18:01:42,411 | INFO     | extracted standard memory fields from prmon json
[2025-02-25 13:01:56] 2025-02-25 18:01:42,411 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-02-25 13:01:56] 2025-02-25 18:01:42,412 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-02-25 13:01:56] 2025-02-25 18:01:42,412 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-02-25 13:01:56] 2025-02-25 18:01:42,415 | INFO     | fitting pss+swap vs Time
[2025-02-25 13:01:56] 2025-02-25 18:01:42,415 | INFO     | model: linear, x: [1740501981.0, 1740502042.0, 1740502103.0, 1740502164.0, 1740502225.0, 1740502286.0, 1740502347.0, 1740502408.0, 1740502469.0, 1740502530.0, 1740
[2025-02-25 13:01:56] 2025-02-25 18:01:42,415 | INFO     | sum of square deviations: 115715658.0
[2025-02-25 13:01:56] 2025-02-25 18:01:42,416 | INFO     | sum of deviations: 19278847754.5
[2025-02-25 13:01:56] 2025-02-25 18:01:42,416 | INFO     | mean x: 1740504146.5
[2025-02-25 13:01:56] 2025-02-25 18:01:42,416 | INFO     | mean y: 2612975.9583333335
[2025-02-25 13:01:56] 2025-02-25 18:01:42,416 | INFO     | -- intersect: -289974690324.2525
[2025-02-25 13:01:56] 2025-02-25 18:01:42,416 | INFO     | intersect: -289974690324.2525
[2025-02-25 13:01:56] 2025-02-25 18:01:42,417 | INFO     | chi2: 2.235097840757308
[2025-02-25 13:01:56] 2025-02-25 18:01:42,417 | INFO     | -- intersect: -289974690324.2525
[2025-02-25 13:01:56] 2025-02-25 18:01:42,417 | INFO     | current memory leak: 166.61 B/s (using 72 data points, chi2=2.24)
[2025-02-25 13:01:56] 2025-02-25 18:01:42,417 | INFO     | ..............................
[2025-02-25 13:01:56] 2025-02-25 18:01:42,417 | INFO     | . Timing measurements:
[2025-02-25 13:01:56] 2025-02-25 18:01:42,417 | INFO     | . get job = 0 s
[2025-02-25 13:01:56] 2025-02-25 18:01:42,418 | INFO     | . initial setup = 2 s
[2025-02-25 13:01:56] 2025-02-25 18:01:42,418 | INFO     | . payload setup = 7 s
[2025-02-25 13:01:56] 2025-02-25 18:01:42,418 | INFO     | . stage-in = 0 s
[2025-02-25 13:01:56] 2025-02-25 18:01:42,418 | INFO     | . payload execution = 4818 s
[2025-02-25 13:01:56] 2025-02-25 18:01:42,418 | INFO     | . stage-out = 0 s
[2025-02-25 13:01:56] 2025-02-25 18:01:42,418 | INFO     | . log creation = 0 s
[2025-02-25 13:01:56] 2025-02-25 18:01:42,418 | INFO     | ..............................
[2025-02-25 13:01:56] 2025-02-25 18:01:42,504 | INFO     | 
[2025-02-25 13:01:56] 2025-02-25 18:01:42,505 | INFO     | job summary report
[2025-02-25 13:01:56] 2025-02-25 18:01:42,508 | INFO     | --------------------------------------------------
[2025-02-25 13:01:56] 2025-02-25 18:01:42,508 | INFO     | PanDA job id: 6530518340
[2025-02-25 13:01:56] 2025-02-25 18:01:42,508 | INFO     | task id: 43401171
[2025-02-25 13:01:56] 2025-02-25 18:01:42,508 | INFO     | errors: (none)
[2025-02-25 13:01:56] 2025-02-25 18:01:42,508 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-25 13:01:56] 2025-02-25 18:01:42,508 | INFO     | pilot state: finished 
[2025-02-25 13:01:56] 2025-02-25 18:01:42,509 | INFO     | transexitcode: 0
[2025-02-25 13:01:56] 2025-02-25 18:01:42,509 | INFO     | exeerrorcode: 0
[2025-02-25 13:01:56] 2025-02-25 18:01:42,509 | INFO     | exeerrordiag: 
[2025-02-25 13:01:56] 2025-02-25 18:01:42,509 | INFO     | exitcode: 0
[2025-02-25 13:01:56] 2025-02-25 18:01:42,509 | INFO     | exitmsg: OK
[2025-02-25 13:01:56] 2025-02-25 18:01:42,510 | INFO     | cpuconsumptiontime: 44499 s
[2025-02-25 13:01:56] 2025-02-25 18:01:42,510 | INFO     | nevents: 400
[2025-02-25 13:01:56] 2025-02-25 18:01:42,510 | INFO     | neventsw: 0
[2025-02-25 13:01:56] 2025-02-25 18:01:42,510 | INFO     | pid: 2047
[2025-02-25 13:01:56] 2025-02-25 18:01:42,510 | INFO     | pgrp: 2047
[2025-02-25 13:01:56] 2025-02-25 18:01:42,511 | INFO     | corecount: 12
[2025-02-25 13:01:56] 2025-02-25 18:01:42,511 | INFO     | event service: False
[2025-02-25 13:01:56] 2025-02-25 18:01:42,511 | INFO     | sizes: {0: 2376772, 1: 2376971, 6: 2377177, 11: 2377205, 4829: 2403231, 4830: 2412355, 4833: 2412355, 4839: 2412525}
[2025-02-25 13:01:56] 2025-02-25 18:01:42,511 | INFO     | --------------------------------------------------
[2025-02-25 13:01:56] 2025-02-25 18:01:42,511 | INFO     | 
[2025-02-25 13:01:56] 2025-02-25 18:01:42,512 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-02-25 13:01:56] 2025-02-25 18:01:42,566 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-25 13:01:56] 2025-02-25 18:01:42,566 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-25 13:01:56] 2025-02-25 18:01:42,567 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-25 13:01:56] 2025-02-25 18:01:42,567 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-25 13:01:56] 2025-02-25 18:01:42,567 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-25 13:01:56] 2025-02-25 18:01:42,567 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-25 13:01:56] 2025-02-25 18:01:42,567 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-25 13:01:56] 2025-02-25 18:01:42,568 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-25 13:01:56] 2025-02-25 18:01:42,568 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-25 13:01:56] 2025-02-25 18:01:42,568 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-25 13:01:56] 2025-02-25 18:01:42,569 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-25 13:01:56] 2025-02-25 18:01:42,569 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-25 13:01:56] 2025-02-25 18:01:42,569 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-25 13:01:56] 2025-02-25 18:01:42,569 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-25 13:01:56] 2025-02-25 18:01:42,569 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-25 13:01:56] 2025-02-25 18:01:42,570 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-25 13:01:56] 2025-02-25 18:01:42,570 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-25 13:01:56] 2025-02-25 18:01:42,570 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-25 13:01:56] 2025-02-25 18:01:42,570 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-25 13:01:56] 2025-02-25 18:01:42,570 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-25 13:01:56] 2025-02-25 18:01:42,570 | INFO     | job 6530518340 has completed (purged errors)
[2025-02-25 13:01:56] 2025-02-25 18:01:42,571 | INFO     | overall cleanup function is called
[2025-02-25 13:01:56] 2025-02-25 18:01:42,655 | INFO     | PID=27105 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-02-25 13:01:56] 2025-02-25 18:01:43,576 | INFO     | --- collectZombieJob: --- 10, [2047]
[2025-02-25 13:01:56] 2025-02-25 18:01:43,576 | INFO     | zombie collector waiting for pid 2047
[2025-02-25 13:01:56] 2025-02-25 18:01:43,577 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-25 13:01:56] 2025-02-25 18:01:43,577 | INFO     | collected zombie processes
[2025-02-25 13:01:56] 2025-02-25 18:01:43,577 | INFO     | will attempt to kill all subprocesses of pid=2047
[2025-02-25 13:01:56] 2025-02-25 18:01:43,641 | INFO     | process IDs to be killed: [2047] (in reverse order)
[2025-02-25 13:01:56] 2025-02-25 18:01:43,689 | WARNING  | found no corresponding commands to process id(s)
[2025-02-25 13:01:56] 2025-02-25 18:01:43,689 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-25 13:01:56] 2025-02-25 18:01:43,693 | INFO     | did not find any defunct processes belonging to 2047
[2025-02-25 13:01:56] 2025-02-25 18:01:43,696 | INFO     | did not find any defunct processes belonging to 2047
[2025-02-25 13:01:56] 2025-02-25 18:01:43,696 | INFO     | ready for new job
[2025-02-25 13:01:56] 2025-02-25 18:01:43,696 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-25 13:01:56] 2025-02-25 18:01:43,697 | INFO     | **************************************
[2025-02-25 13:01:56] 2025-02-25 18:01:43,698 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-25 13:01:56] 2025-02-25 18:01:43,698 | INFO     | **************************************
[2025-02-25 13:01:56] 2025-02-25 18:01:43,698 | INFO     | 
[2025-02-25 13:01:56] 2025-02-25 18:01:43,698 | INFO     | architecture information:
[2025-02-25 13:01:56] 2025-02-25 18:01:43,699 | INFO     | executing command: cat /etc/os-release
[2025-02-25 13:01:56] 2025-02-25 18:01:43,713 | INFO     | cat /etc/os-release:
[2025-02-25 13:01:56] NAME="CentOS Linux"
[2025-02-25 13:01:56] VERSION="7 (Core)"
[2025-02-25 13:01:56] ID="centos"
[2025-02-25 13:01:56] ID_LIKE="rhel fedora"
[2025-02-25 13:01:56] VERSION_ID="7"
[2025-02-25 13:01:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-25 13:01:56] ANSI_COLOR="0;31"
[2025-02-25 13:01:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-25 13:01:56] HOME_URL="https://www.centos.org/"
[2025-02-25 13:01:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-25 13:01:56] 
[2025-02-25 13:01:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-25 13:01:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-25 13:01:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-25 13:01:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-25 13:01:56] 
[2025-02-25 13:01:56] 2025-02-25 18:01:43,713 | INFO     | **************************************
[2025-02-25 13:01:56] 2025-02-25 18:01:44,215 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-02-25 13:01:56] 2025-02-25 18:01:44,231 | INFO     | sufficient remaining disk space (29376905216 B)
[2025-02-25 13:01:56] 2025-02-25 18:01:44,232 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-25 13:01:56] 2025-02-25 18:01:44,232 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-25 13:01:56] 2025-02-25 18:01:44,232 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-25 13:01:56] 2025-02-25 18:01:44,233 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-02-25 13:01:56] 2025-02-25 18:01:44,233 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-02-25 13:01:56] 2025-02-25 18:01:44,234 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-25 13:01:56] 2025-02-25 18:01:44,234 | INFO     | will abort loop
[2025-02-25 13:01:56] 2025-02-25 18:01:44,285 | INFO     | all data control threads have been joined
[2025-02-25 13:01:56] 2025-02-25 18:01:44,424 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-25 13:01:56] 2025-02-25 18:01:44,661 | INFO     | found 0 job(s) in 20 queues
[2025-02-25 13:01:56] 2025-02-25 18:01:44,661 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-25 13:01:56] 2025-02-25 18:01:44,661 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-25 13:01:56] 2025-02-25 18:01:44,947 | INFO     | all payload control threads have been joined
[2025-02-25 13:01:56] 2025-02-25 18:01:45,236 | INFO     | [job] queue monitor thread has finished
[2025-02-25 13:01:56] 2025-02-25 18:01:45,237 | INFO     | [job] retrieve thread has finished
[2025-02-25 13:01:56] 2025-02-25 18:01:45,239 | INFO     | [job] job monitor thread has finished
[2025-02-25 13:01:56] 2025-02-25 18:01:45,271 | INFO     | [payload] validate_post thread has finished
[2025-02-25 13:01:56] 2025-02-25 18:01:45,291 | INFO     | [data] control thread has finished
[2025-02-25 13:01:56] 2025-02-25 18:01:45,464 | INFO     | [payload] execute_payloads thread has finished
[2025-02-25 13:01:56] 2025-02-25 18:01:45,480 | INFO     | [job] validate thread has finished
[2025-02-25 13:01:56] 2025-02-25 18:01:45,489 | INFO     | all job control threads have been joined
[2025-02-25 13:01:56] 2025-02-25 18:01:45,771 | INFO     | [job] create_data_payload thread has finished
[2025-02-25 13:01:56] 2025-02-25 18:01:45,952 | INFO     | [payload] control thread has finished
[2025-02-25 13:01:56] 2025-02-25 18:01:45,955 | INFO     | [payload] validate_pre thread has finished
[2025-02-25 13:01:56] 2025-02-25 18:01:46,021 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-25 13:01:56] 2025-02-25 18:01:46,212 | INFO     | [data] copytool_in thread has finished
[2025-02-25 13:01:56] 2025-02-25 18:01:46,303 | INFO     | [payload] failed_post thread has finished
[2025-02-25 13:01:56] 2025-02-25 18:01:46,430 | INFO     | [data] copytool_out thread has finished
[2025-02-25 13:01:56] 2025-02-25 18:01:46,494 | INFO     | [job] control thread has finished
[2025-02-25 13:01:56] 2025-02-25 18:01:46,892 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-25 13:01:56] 2025-02-25 18:01:50,897 | INFO     | [data] queue_monitor thread has finished
[2025-02-25 13:01:56] 2025-02-25 18:01:51,279 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139917466261312)>', '<ExcThread(monitor, started 139916814055168)>']
[2025-02-25 13:01:56] 2025-02-25 18:01:51,697 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-25 13:01:56] 2025-02-25 18:01:51,697 | INFO     | [monitor] control thread has ended
[2025-02-25 13:01:56] 2025-02-25 18:01:56,304 | INFO     | all workflow threads have been joined
[2025-02-25 13:01:56] 2025-02-25 18:01:56,305 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-25 13:01:56] 2025-02-25 18:01:56,305 | INFO     | traces error code: 0
[2025-02-25 13:01:56] 2025-02-25 18:01:56,305 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-25 13:01:56] 2025-02-25 18:01:56,393 [wrapper] ==== pilot stdout END ====
[2025-02-25 13:01:56] 2025-02-25 18:01:56,397 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-25 13:01:56] 2025-02-25 18:01:56,401 [wrapper] pilotpid: 27105
[2025-02-25 13:01:56] 2025-02-25 18:01:56,405 [wrapper] Pilot exit status: 0
[2025-02-25 13:01:56] 2025-02-25 18:01:56,419 [wrapper] pandaids: 6530518340
[2025-02-25 13:01:56] 2025-02-25 18:01:56,456 [wrapper] cleanup supervisor_pilot 25716 27106
[2025-02-25 13:01:56] 2025-02-25 18:01:56,460 [wrapper] Test setup, not cleaning
[2025-02-25 13:01:56] 2025-02-25 18:01:56,467 [wrapper] apfmon messages muted
[2025-02-25 13:01:56] 2025-02-25 18:01:56,472 [wrapper] ==== wrapper stdout END ====
[2025-02-25 13:01:56] 2025-02-25 18:01:56,476 [wrapper] ==== wrapper stderr END ====
[2025-02-25 13:01:56]  *** Error codes and diagnostics ***
[2025-02-25 13:01:56]     "exeErrorCode": 0,
[2025-02-25 13:01:56]     "exeErrorDiag": "",
[2025-02-25 13:01:56]     "pilotErrorCode": 0,
[2025-02-25 13:01:56]     "pilotErrorDiag": "",
[2025-02-25 13:01:56]  *** Listing of results directory ***
[2025-02-25 13:01:56] total 423336
[2025-02-25 13:01:56] -rw-r--r-- 1 boincer umatlas    491065 Feb 25 10:18 pilot3.tar.gz
[2025-02-25 13:01:56] -rw-r--r-- 1 boincer umatlas      5118 Feb 25 10:36 queuedata.json
[2025-02-25 13:01:56] -rwx------ 1 boincer umatlas     35865 Feb 25 10:36 runpilot2-wrapper.sh
[2025-02-25 13:01:56] -rw-r--r-- 1 boincer umatlas       100 Feb 25 11:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-25 13:01:56] -rwxr-xr-x 1 boincer umatlas      7986 Feb 25 11:40 run_atlas
[2025-02-25 13:01:56] -rw-r--r-- 1 boincer umatlas       105 Feb 25 11:40 job.xml
[2025-02-25 13:01:56] -rw-r--r-- 2 boincer umatlas 247114424 Feb 25 11:40 EVNT.43401169._000044.pool.root.1
[2025-02-25 13:01:56] -rw-r--r-- 2 boincer umatlas     17569 Feb 25 11:40 start_atlas.sh
[2025-02-25 13:01:56] drwxrwx--x 2 boincer umatlas      4096 Feb 25 11:40 shared
[2025-02-25 13:01:56] -rw-r--r-- 2 boincer umatlas    503557 Feb 25 11:40 input.tar.gz
[2025-02-25 13:01:56] -rw-r--r-- 1 boincer umatlas         0 Feb 25 11:40 boinc_lockfile
[2025-02-25 13:01:56] -rw-r--r-- 1 boincer umatlas      2542 Feb 25 11:40 pandaJob.out
[2025-02-25 13:01:56] -rw------- 1 boincer umatlas       424 Feb 25 11:40 setup.sh.local
[2025-02-25 13:01:56] -rw------- 1 boincer umatlas    988282 Feb 25 11:40 agis_schedconf.cvmfs.json
[2025-02-25 13:01:56] -rw------- 1 boincer umatlas   1577983 Feb 25 11:40 agis_ddmendpoints.agis.ALL.json
[2025-02-25 13:01:56] drwx------ 4 boincer umatlas      4096 Feb 25 11:40 pilot3
[2025-02-25 13:01:56] -rw-r--r-- 1 boincer umatlas      5869 Feb 25 12:57 init_data.xml
[2025-02-25 13:01:56] -rw------- 1 boincer umatlas        95 Feb 25 13:00 pilot_heartbeat.json
[2025-02-25 13:01:56] -rw------- 1 boincer umatlas 180985733 Feb 25 13:01 HITS.43401171._001104.pool.root.1
[2025-02-25 13:01:56] -rw------- 1 boincer umatlas      1044 Feb 25 13:01 memory_monitor_summary.json
[2025-02-25 13:01:56] -rw-r--r-- 1 boincer umatlas       529 Feb 25 13:01 boinc_task_state.xml
[2025-02-25 13:01:56] -rw------- 1 boincer umatlas    349840 Feb 25 13:01 log.43401171._001104.job.log.tgz.1
[2025-02-25 13:01:56] -rw------- 1 boincer umatlas      7755 Feb 25 13:01 heartbeat.json
[2025-02-25 13:01:56] -rw-r--r-- 1 boincer umatlas      8192 Feb 25 13:01 boinc_mmap_file
[2025-02-25 13:01:56] -rw-r--r-- 1 boincer umatlas        27 Feb 25 13:01 wrapper_checkpoint.txt
[2025-02-25 13:01:56] -rw------- 1 boincer umatlas      4401 Feb 25 13:01 pilotlog.txt
[2025-02-25 13:01:56] -rw------- 1 boincer umatlas    453925 Feb 25 13:01 log.43401171._001104.job.log.1
[2025-02-25 13:01:56] -rw------- 1 boincer umatlas       357 Feb 25 13:01 output.list
[2025-02-25 13:01:56] -rw-r--r-- 1 boincer umatlas       620 Feb 25 13:01 runtime_log
[2025-02-25 13:01:56] -rw------- 1 boincer umatlas    819200 Feb 25 13:01 result.tar.gz
[2025-02-25 13:01:56] -rw-r--r-- 1 boincer umatlas     11015 Feb 25 13:01 runtime_log.err
[2025-02-25 13:01:56] -rw------- 1 boincer umatlas       658 Feb 25 13:01 0kDNDmTAC76n9Rq4apOajLDm4fhM0noT9bVoFjIUDmg1fKDmK5PBCn.diag
[2025-02-25 13:01:56] -rw-r--r-- 1 boincer umatlas     21801 Feb 25 13:01 stderr.txt
[2025-02-25 13:01:56] HITS file was successfully produced:
[2025-02-25 13:01:56] -rw------- 1 boincer umatlas 180985733 Feb 25 13:01 shared/HITS.pool.root.1
[2025-02-25 13:01:56]  *** Contents of shared directory: ***
[2025-02-25 13:01:56] total 419380
[2025-02-25 13:01:56] -rw-r--r-- 2 boincer umatlas 247114424 Feb 25 11:40 ATLAS.root_0
[2025-02-25 13:01:56] -rw-r--r-- 2 boincer umatlas     17569 Feb 25 11:40 start_atlas.sh
[2025-02-25 13:01:56] -rw-r--r-- 2 boincer umatlas    503557 Feb 25 11:40 input.tar.gz
[2025-02-25 13:01:56] -rw------- 1 boincer umatlas 180985733 Feb 25 13:01 HITS.pool.root.1
[2025-02-25 13:01:56] -rw------- 1 boincer umatlas    819200 Feb 25 13:01 result.tar.gz
13:01:58 (23511): run_atlas exited; CPU time 44437.081777
13:01:58 (23511): called boinc_finish(0)

</stderr_txt>
]]>

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