Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:43:48 (5015): wrapper (7.7.26015): starting
06:43:48 (5015): wrapper: running run_atlas (--nthreads 12)
[2025-02-25 06:43:48] Arguments: --nthreads 12
[2025-02-25 06:43:48] Threads: 12
[2025-02-25 06:43:48] Checking for CVMFS
[2025-02-25 06:43:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-02-25 06:43:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-02-25 06:43:49] Running cvmfs_config stat atlas.cern.ch
[2025-02-25 06:43:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-02-25 06:43:49] 2.11.2.0 5277 293095 153128 143037 3 58 18972216 20275200 1 130560 0 24504235 99.986 7639376 40968 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-02-25 06:43:49] CVMFS is ok
[2025-02-25 06:43:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-25 06:43:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-25 06:43:49] Further information can be found at the LHC@home message board.
[2025-02-25 06:43:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-25 06:43:49] Checking for apptainer binary...
[2025-02-25 06:43:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-02-25 06:43:49] Running /usr/bin/apptainer --version
[2025-02-25 06:43:49] apptainer version 1.3.2-1.el7
[2025-02-25 06:43:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-25 06:43:50] c-205-15.aglt2.org
[2025-02-25 06:43:50] apptainer works
[2025-02-25 06:43:50] Set ATHENA_PROC_NUMBER=12
[2025-02-25 06:43:50] Set ATHENA_CORE_NUMBER=12
[2025-02-25 06:43:50] Starting ATLAS job with PandaID=6530163486
[2025-02-25 06:43:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-25 08:09:43]  *** The last 200 lines of the pilot log: ***
[2025-02-25 08:09:43]  mtime=0
[2025-02-25 08:09:43]  protocol_id=None
[2025-02-25 08:09:43]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-02-25 08:09:43]  replicas=None
[2025-02-25 08:09:43]  scope=mc23_13p6TeV
[2025-02-25 08:09:43]  status=None
[2025-02-25 08:09:43]  status_code=0
[2025-02-25 08:09:43]  storage_token=
[2025-02-25 08:09:43]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6530163486/log.43401121._001391.job.log.tgz.1
[2025-02-25 08:09:43]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1f/f6/log.43401121._001391.job.log.tgz.1
[2025-02-25 08:09:43]  workdir=None
[2025-02-25 08:09:43] ]
[2025-02-25 08:09:43] 2025-02-25 13:09:15,603 | INFO     | transferring file log.43401121._001391.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6530163486/log.43401121._001391.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-02-25 08:09:43] 2025-02-25 13:09:15,603 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6530163486/log.43401121._001391.job.log.tgz.1 /tmp/boinchome/slots/0/log.43401121._001391.job
[2025-02-25 08:09:43] 2025-02-25 13:09:15,624 | INFO     | adding to output.list: log.43401121._001391.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1f/f6/log.43401121._001391.job.log.tg
[2025-02-25 08:09:43] 2025-02-25 13:09:15,625 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-02-25 08:09:43] 2025-02-25 13:09:15,625 | INFO     | summary of transferred files:
[2025-02-25 08:09:43] 2025-02-25 13:09:15,626 | INFO     |  -- lfn=log.43401121._001391.job.log.tgz.1, status_code=0, status=transferred
[2025-02-25 08:09:43] 2025-02-25 13:09:15,626 | INFO     | stage-out finished correctly
[2025-02-25 08:09:43] 2025-02-25 13:09:16,235 | WARNING  | process 15035 can no longer be monitored (due to stat problems) - aborting
[2025-02-25 08:09:43] 2025-02-25 13:09:16,236 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6530163486/memory_monitor_summary.json (trf name=prmon)
[2025-02-25 08:09:43] 2025-02-25 13:09:16,293 | INFO     | number of running child processes to parent process 15035: 1
[2025-02-25 08:09:43] 2025-02-25 13:09:16,293 | INFO     | maximum number of monitored processes: 6
[2025-02-25 08:09:43] 2025-02-25 13:09:18,604 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-02-25 08:09:43] 2025-02-25 13:09:18,688 | INFO     | job 6530163486 has state=finished
[2025-02-25 08:09:43] 2025-02-25 13:09:18,688 | INFO     | preparing for final server update for job 6530163486 in state='finished'
[2025-02-25 08:09:43] 2025-02-25 13:09:18,689 | INFO     | this job has now completed (state=finished)
[2025-02-25 08:09:43] 2025-02-25 13:09:18,689 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-02-25 08:09:43] 2025-02-25 13:09:18,689 | INFO     | log transfer has been attempted: DONE
[2025-02-25 08:09:43] 2025-02-25 13:09:18,689 | INFO     | job 6530163486 has finished - writing final server update
[2025-02-25 08:09:43] 2025-02-25 13:09:18,690 | INFO     | total number of processed events: 400 (read)
[2025-02-25 08:09:43] 2025-02-25 13:09:18,691 | INFO     | executing command: lscpu
[2025-02-25 08:09:43] 2025-02-25 13:09:18,716 | INFO     | found 12 cores (6 cores per socket, 2 sockets)
[2025-02-25 08:09:43] 2025-02-25 13:09:18,729 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-02-25 08:09:43] 2025-02-25 13:09:18,796 | INFO     | monitor loop #375: job 0:6530163486 is in state 'finished'
[2025-02-25 08:09:43] 2025-02-25 13:09:18,796 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-25 08:09:43] 2025-02-25 13:09:21,299 | INFO     | monitor loop #376: job 0:6530163486 is in state 'finished'
[2025-02-25 08:09:43] 2025-02-25 13:09:21,299 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-25 08:09:43] 2025-02-25 13:09:23,689 | INFO     | CPU arch script returned: x86-64-v2
[2025-02-25 08:09:43] 2025-02-25 13:09:23,690 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6530163486/memory_monitor_summary.json (trf name=prmon)
[2025-02-25 08:09:43] 2025-02-25 13:09:23,691 | INFO     | extracted standard info from prmon json
[2025-02-25 08:09:43] 2025-02-25 13:09:23,691 | INFO     | extracted standard memory fields from prmon json
[2025-02-25 08:09:43] 2025-02-25 13:09:23,691 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-02-25 08:09:43] 2025-02-25 13:09:23,692 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-02-25 08:09:43] 2025-02-25 13:09:23,692 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-02-25 08:09:43] 2025-02-25 13:09:23,694 | INFO     | fitting pss+swap vs Time
[2025-02-25 08:09:43] 2025-02-25 13:09:23,695 | INFO     | model: linear, x: [1740484178.0, 1740484239.0, 1740484300.0, 1740484361.0, 1740484422.0, 1740484483.0, 1740484544.0, 1740484605.0, 1740484666.0, 1740484727.0, 1740
[2025-02-25 08:09:43] 2025-02-25 13:09:23,695 | INFO     | sum of square deviations: 141539398.0
[2025-02-25 08:09:43] 2025-02-25 13:09:23,696 | INFO     | sum of deviations: 22646925392.00001
[2025-02-25 08:09:43] 2025-02-25 13:09:23,696 | INFO     | mean x: 1740486496.0
[2025-02-25 08:09:43] 2025-02-25 13:09:23,696 | INFO     | mean y: 2577861.675324675
[2025-02-25 08:09:43] 2025-02-25 13:09:23,696 | INFO     | -- intersect: -278482906587.6475
[2025-02-25 08:09:43] 2025-02-25 13:09:23,696 | INFO     | intersect: -278482906587.6475
[2025-02-25 08:09:43] 2025-02-25 13:09:23,697 | INFO     | chi2: 2.010161308915712
[2025-02-25 08:09:43] 2025-02-25 13:09:23,697 | INFO     | -- intersect: -278482906587.6475
[2025-02-25 08:09:43] 2025-02-25 13:09:23,697 | INFO     | current memory leak: 160.00 B/s (using 77 data points, chi2=2.01)
[2025-02-25 08:09:43] 2025-02-25 13:09:23,698 | INFO     | ..............................
[2025-02-25 08:09:43] 2025-02-25 13:09:23,698 | INFO     | . Timing measurements:
[2025-02-25 08:09:43] 2025-02-25 13:09:23,698 | INFO     | . get job = 0 s
[2025-02-25 08:09:43] 2025-02-25 13:09:23,698 | INFO     | . initial setup = 2 s
[2025-02-25 08:09:43] 2025-02-25 13:09:23,698 | INFO     | . payload setup = 7 s
[2025-02-25 08:09:43] 2025-02-25 13:09:23,698 | INFO     | . stage-in = 0 s
[2025-02-25 08:09:43] 2025-02-25 13:09:23,698 | INFO     | . payload execution = 5084 s
[2025-02-25 08:09:43] 2025-02-25 13:09:23,698 | INFO     | . stage-out = 0 s
[2025-02-25 08:09:43] 2025-02-25 13:09:23,698 | INFO     | . log creation = 0 s
[2025-02-25 08:09:43] 2025-02-25 13:09:23,699 | INFO     | ..............................
[2025-02-25 08:09:43] 2025-02-25 13:09:24,247 | INFO     | 
[2025-02-25 08:09:43] 2025-02-25 13:09:24,247 | INFO     | job summary report
[2025-02-25 08:09:43] 2025-02-25 13:09:24,247 | INFO     | --------------------------------------------------
[2025-02-25 08:09:43] 2025-02-25 13:09:24,248 | INFO     | PanDA job id: 6530163486
[2025-02-25 08:09:43] 2025-02-25 13:09:24,248 | INFO     | task id: 43401121
[2025-02-25 08:09:43] 2025-02-25 13:09:24,248 | INFO     | errors: (none)
[2025-02-25 08:09:43] 2025-02-25 13:09:24,248 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-25 08:09:43] 2025-02-25 13:09:24,248 | INFO     | pilot state: finished 
[2025-02-25 08:09:43] 2025-02-25 13:09:24,248 | INFO     | transexitcode: 0
[2025-02-25 08:09:43] 2025-02-25 13:09:24,249 | INFO     | exeerrorcode: 0
[2025-02-25 08:09:43] 2025-02-25 13:09:24,249 | INFO     | exeerrordiag: 
[2025-02-25 08:09:43] 2025-02-25 13:09:24,249 | INFO     | exitcode: 0
[2025-02-25 08:09:43] 2025-02-25 13:09:24,249 | INFO     | exitmsg: OK
[2025-02-25 08:09:43] 2025-02-25 13:09:24,249 | INFO     | cpuconsumptiontime: 48155 s
[2025-02-25 08:09:43] 2025-02-25 13:09:24,249 | INFO     | nevents: 400
[2025-02-25 08:09:43] 2025-02-25 13:09:24,249 | INFO     | neventsw: 0
[2025-02-25 08:09:43] 2025-02-25 13:09:24,250 | INFO     | pid: 15035
[2025-02-25 08:09:43] 2025-02-25 13:09:24,250 | INFO     | pgrp: 15035
[2025-02-25 08:09:43] 2025-02-25 13:09:24,250 | INFO     | corecount: 12
[2025-02-25 08:09:43] 2025-02-25 13:09:24,250 | INFO     | event service: False
[2025-02-25 08:09:43] 2025-02-25 13:09:24,250 | INFO     | sizes: {0: 2383363, 1: 2383363, 5: 2383597, 11: 2383653, 5095: 2409820, 5096: 2418761, 5099: 2418945, 5104: 2419115}
[2025-02-25 08:09:43] 2025-02-25 13:09:24,250 | INFO     | --------------------------------------------------
[2025-02-25 08:09:43] 2025-02-25 13:09:24,251 | INFO     | 
[2025-02-25 08:09:43] 2025-02-25 13:09:24,251 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-02-25 08:09:43] 2025-02-25 13:09:24,276 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-25 08:09:43] 2025-02-25 13:09:24,276 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-25 08:09:43] 2025-02-25 13:09:24,276 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-25 08:09:43] 2025-02-25 13:09:24,276 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-25 08:09:43] 2025-02-25 13:09:24,276 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-25 08:09:43] 2025-02-25 13:09:24,276 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-25 08:09:43] 2025-02-25 13:09:24,276 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-25 08:09:43] 2025-02-25 13:09:24,276 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-25 08:09:43] 2025-02-25 13:09:24,277 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-25 08:09:43] 2025-02-25 13:09:24,277 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-25 08:09:43] 2025-02-25 13:09:24,277 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-25 08:09:43] 2025-02-25 13:09:24,277 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-25 08:09:43] 2025-02-25 13:09:24,277 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-25 08:09:43] 2025-02-25 13:09:24,277 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-25 08:09:43] 2025-02-25 13:09:24,277 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-25 08:09:43] 2025-02-25 13:09:24,277 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-25 08:09:43] 2025-02-25 13:09:24,277 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-25 08:09:43] 2025-02-25 13:09:24,278 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-25 08:09:43] 2025-02-25 13:09:24,278 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-25 08:09:43] 2025-02-25 13:09:24,278 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-25 08:09:43] 2025-02-25 13:09:24,278 | INFO     | job 6530163486 has completed (purged errors)
[2025-02-25 08:09:43] 2025-02-25 13:09:24,278 | INFO     | overall cleanup function is called
[2025-02-25 08:09:43] 2025-02-25 13:09:25,286 | INFO     | --- collectZombieJob: --- 10, [15035]
[2025-02-25 08:09:43] 2025-02-25 13:09:25,286 | INFO     | zombie collector waiting for pid 15035
[2025-02-25 08:09:43] 2025-02-25 13:09:25,292 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-25 08:09:43] 2025-02-25 13:09:25,292 | INFO     | collected zombie processes
[2025-02-25 08:09:43] 2025-02-25 13:09:25,292 | INFO     | will attempt to kill all subprocesses of pid=15035
[2025-02-25 08:09:43] 2025-02-25 13:09:25,351 | INFO     | process IDs to be killed: [15035] (in reverse order)
[2025-02-25 08:09:43] 2025-02-25 13:09:25,398 | WARNING  | found no corresponding commands to process id(s)
[2025-02-25 08:09:43] 2025-02-25 13:09:25,398 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-25 08:09:43] 2025-02-25 13:09:25,402 | INFO     | did not find any defunct processes belonging to 15035
[2025-02-25 08:09:43] 2025-02-25 13:09:25,406 | INFO     | did not find any defunct processes belonging to 15035
[2025-02-25 08:09:43] 2025-02-25 13:09:25,406 | INFO     | ready for new job
[2025-02-25 08:09:43] 2025-02-25 13:09:25,406 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-25 08:09:43] 2025-02-25 13:09:25,407 | INFO     | **************************************
[2025-02-25 08:09:43] 2025-02-25 13:09:25,408 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-25 08:09:43] 2025-02-25 13:09:25,408 | INFO     | **************************************
[2025-02-25 08:09:43] 2025-02-25 13:09:25,408 | INFO     | 
[2025-02-25 08:09:43] 2025-02-25 13:09:25,408 | INFO     | architecture information:
[2025-02-25 08:09:43] 2025-02-25 13:09:25,409 | INFO     | executing command: cat /etc/os-release
[2025-02-25 08:09:43] 2025-02-25 13:09:25,422 | INFO     | cat /etc/os-release:
[2025-02-25 08:09:43] NAME="CentOS Linux"
[2025-02-25 08:09:43] VERSION="7 (Core)"
[2025-02-25 08:09:43] ID="centos"
[2025-02-25 08:09:43] ID_LIKE="rhel fedora"
[2025-02-25 08:09:43] VERSION_ID="7"
[2025-02-25 08:09:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-25 08:09:43] ANSI_COLOR="0;31"
[2025-02-25 08:09:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-25 08:09:43] HOME_URL="https://www.centos.org/"
[2025-02-25 08:09:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-25 08:09:43] 
[2025-02-25 08:09:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-25 08:09:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-25 08:09:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-25 08:09:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-25 08:09:43] 
[2025-02-25 08:09:43] 2025-02-25 13:09:25,423 | INFO     | **************************************
[2025-02-25 08:09:43] 2025-02-25 13:09:25,926 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-02-25 08:09:43] 2025-02-25 13:09:25,941 | INFO     | sufficient remaining disk space (29355933696 B)
[2025-02-25 08:09:43] 2025-02-25 13:09:25,942 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-25 08:09:43] 2025-02-25 13:09:25,942 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-25 08:09:43] 2025-02-25 13:09:25,947 | INFO     | all payload control threads have been joined
[2025-02-25 08:09:43] 2025-02-25 13:09:26,108 | INFO     | all data control threads have been joined
[2025-02-25 08:09:43] 2025-02-25 13:09:26,228 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-25 08:09:43] 2025-02-25 13:09:26,305 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-02-25 08:09:43] 2025-02-25 13:09:26,305 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-02-25 08:09:43] 2025-02-25 13:09:26,305 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-25 08:09:43] 2025-02-25 13:09:26,306 | INFO     | will abort loop
[2025-02-25 08:09:43] 2025-02-25 13:09:26,947 | INFO     | [job] retrieve thread has finished
[2025-02-25 08:09:43] 2025-02-25 13:09:26,952 | INFO     | [payload] control thread has finished
[2025-02-25 08:09:43] 2025-02-25 13:09:26,958 | INFO     | PID=8631 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-02-25 08:09:43] 2025-02-25 13:09:26,959 | INFO     | found 0 job(s) in 20 queues
[2025-02-25 08:09:43] 2025-02-25 13:09:26,959 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-25 08:09:43] 2025-02-25 13:09:26,959 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-25 08:09:43] 2025-02-25 13:09:27,070 | INFO     | [payload] validate_post thread has finished
[2025-02-25 08:09:43] 2025-02-25 13:09:27,113 | INFO     | [data] control thread has finished
[2025-02-25 08:09:43] 2025-02-25 13:09:27,161 | INFO     | [payload] validate_pre thread has finished
[2025-02-25 08:09:43] 2025-02-25 13:09:27,311 | INFO     | [job] job monitor thread has finished
[2025-02-25 08:09:43] 2025-02-25 13:09:27,506 | INFO     | all job control threads have been joined
[2025-02-25 08:09:43] 2025-02-25 13:09:27,535 | INFO     | [data] copytool_in thread has finished
[2025-02-25 08:09:43] 2025-02-25 13:09:27,612 | INFO     | [payload] failed_post thread has finished
[2025-02-25 08:09:43] 2025-02-25 13:09:27,793 | INFO     | [payload] execute_payloads thread has finished
[2025-02-25 08:09:43] 2025-02-25 13:09:28,076 | INFO     | [job] validate thread has finished
[2025-02-25 08:09:43] 2025-02-25 13:09:28,233 | INFO     | [data] copytool_out thread has finished
[2025-02-25 08:09:43] 2025-02-25 13:09:28,383 | INFO     | [job] create_data_payload thread has finished
[2025-02-25 08:09:43] 2025-02-25 13:09:28,512 | INFO     | [job] control thread has finished
[2025-02-25 08:09:43] 2025-02-25 13:09:28,793 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-25 08:09:43] 2025-02-25 13:09:29,196 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-25 08:09:43] 2025-02-25 13:09:29,798 | INFO     | [job] queue monitor thread has finished
[2025-02-25 08:09:43] 2025-02-25 13:09:33,202 | INFO     | [data] queue_monitor thread has finished
[2025-02-25 08:09:43] 2025-02-25 13:09:36,907 | INFO     | job.realtimelogging is not enabled
[2025-02-25 08:09:43] 2025-02-25 13:09:37,912 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-25 08:09:43] 2025-02-25 13:09:38,024 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139725823182656)>', '<ExcThread(monitor, started 139725377611520)>']
[2025-02-25 08:09:43] 2025-02-25 13:09:39,014 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-25 08:09:43] 2025-02-25 13:09:39,014 | INFO     | [monitor] control thread has ended
[2025-02-25 08:09:43] 2025-02-25 13:09:43,049 | INFO     | all workflow threads have been joined
[2025-02-25 08:09:43] 2025-02-25 13:09:43,049 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-25 08:09:43] 2025-02-25 13:09:43,050 | INFO     | traces error code: 0
[2025-02-25 08:09:43] 2025-02-25 13:09:43,050 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-25 08:09:43] 2025-02-25 13:09:43,141 [wrapper] ==== pilot stdout END ====
[2025-02-25 08:09:43] 2025-02-25 13:09:43,145 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-25 08:09:43] 2025-02-25 13:09:43,149 [wrapper] pilotpid: 8631
[2025-02-25 08:09:43] 2025-02-25 13:09:43,153 [wrapper] Pilot exit status: 0
[2025-02-25 08:09:43] 2025-02-25 13:09:43,169 [wrapper] pandaids: 6530163486
[2025-02-25 08:09:43] 2025-02-25 13:09:43,207 [wrapper] cleanup supervisor_pilot 27012 8632
[2025-02-25 08:09:43] 2025-02-25 13:09:43,210 [wrapper] Test setup, not cleaning
[2025-02-25 08:09:43] 2025-02-25 13:09:43,218 [wrapper] apfmon messages muted
[2025-02-25 08:09:43] 2025-02-25 13:09:43,222 [wrapper] ==== wrapper stdout END ====
[2025-02-25 08:09:43] 2025-02-25 13:09:43,226 [wrapper] ==== wrapper stderr END ====
[2025-02-25 08:09:43]  *** Error codes and diagnostics ***
[2025-02-25 08:09:43]     "exeErrorCode": 0,
[2025-02-25 08:09:43]     "exeErrorDiag": "",
[2025-02-25 08:09:43]     "pilotErrorCode": 0,
[2025-02-25 08:09:43]     "pilotErrorDiag": "",
[2025-02-25 08:09:43]  *** Listing of results directory ***
[2025-02-25 08:09:43] total 438116
[2025-02-25 08:09:43] -rw-r--r-- 1 boincer umatlas    491065 Feb 25 06:17 pilot3.tar.gz
[2025-02-25 08:09:43] -rwx------ 1 boincer umatlas     35865 Feb 25 06:42 runpilot2-wrapper.sh
[2025-02-25 08:09:43] -rw-r--r-- 1 boincer umatlas      5118 Feb 25 06:42 queuedata.json
[2025-02-25 08:09:43] -rw-r--r-- 1 boincer umatlas       100 Feb 25 06:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-25 08:09:43] -rwxr-xr-x 1 boincer umatlas      7986 Feb 25 06:43 run_atlas
[2025-02-25 08:09:43] -rw-r--r-- 1 boincer umatlas       105 Feb 25 06:43 job.xml
[2025-02-25 08:09:43] -rw-r--r-- 2 boincer umatlas    503549 Feb 25 06:43 input.tar.gz
[2025-02-25 08:09:43] -rw-r--r-- 2 boincer umatlas 253463069 Feb 25 06:43 EVNT.43401119._000058.pool.root.1
[2025-02-25 08:09:43] -rw-r--r-- 2 boincer umatlas     17569 Feb 25 06:43 start_atlas.sh
[2025-02-25 08:09:43] drwxrwx--x 2 boincer umatlas      4096 Feb 25 06:43 shared
[2025-02-25 08:09:43] -rw-r--r-- 1 boincer umatlas         0 Feb 25 06:43 boinc_lockfile
[2025-02-25 08:09:43] -rw-r--r-- 1 boincer umatlas      2548 Feb 25 06:43 pandaJob.out
[2025-02-25 08:09:43] -rw------- 1 boincer umatlas       424 Feb 25 06:43 setup.sh.local
[2025-02-25 08:09:43] -rw------- 1 boincer umatlas    989526 Feb 25 06:44 agis_schedconf.cvmfs.json
[2025-02-25 08:09:43] -rw------- 1 boincer umatlas   1582519 Feb 25 06:44 agis_ddmendpoints.agis.ALL.json
[2025-02-25 08:09:43] drwx------ 4 boincer umatlas      4096 Feb 25 06:44 pilot3
[2025-02-25 08:09:43] -rw-r--r-- 1 boincer umatlas      5867 Feb 25 08:04 init_data.xml
[2025-02-25 08:09:43] -rw------- 1 boincer umatlas 189666178 Feb 25 08:08 HITS.43401121._001391.pool.root.1
[2025-02-25 08:09:43] -rw-r--r-- 1 boincer umatlas       529 Feb 25 08:08 boinc_task_state.xml
[2025-02-25 08:09:43] -rw------- 1 boincer umatlas        95 Feb 25 08:09 pilot_heartbeat.json
[2025-02-25 08:09:43] -rw------- 1 boincer umatlas      1044 Feb 25 08:09 memory_monitor_summary.json
[2025-02-25 08:09:43] -rw-r--r-- 1 boincer umatlas      8192 Feb 25 08:09 boinc_mmap_file
[2025-02-25 08:09:43] -rw-r--r-- 1 boincer umatlas        27 Feb 25 08:09 wrapper_checkpoint.txt
[2025-02-25 08:09:43] -rw------- 1 boincer umatlas    371506 Feb 25 08:09 log.43401121._001391.job.log.tgz.1
[2025-02-25 08:09:43] -rw------- 1 boincer umatlas      7757 Feb 25 08:09 heartbeat.json
[2025-02-25 08:09:43] -rw------- 1 boincer umatlas      4789 Feb 25 08:09 pilotlog.txt
[2025-02-25 08:09:43] -rw------- 1 boincer umatlas    477769 Feb 25 08:09 log.43401121._001391.job.log.1
[2025-02-25 08:09:43] -rw------- 1 boincer umatlas       357 Feb 25 08:09 output.list
[2025-02-25 08:09:43] -rw-r--r-- 1 boincer umatlas       620 Feb 25 08:09 runtime_log
[2025-02-25 08:09:43] -rw------- 1 boincer umatlas    870400 Feb 25 08:09 result.tar.gz
[2025-02-25 08:09:43] -rw-r--r-- 1 boincer umatlas     11015 Feb 25 08:09 runtime_log.err
[2025-02-25 08:09:43] -rw------- 1 boincer umatlas       658 Feb 25 08:09 R1fLDmFV866nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmmGwKDmdYxLBo.diag
[2025-02-25 08:09:43] -rw-r--r-- 1 boincer umatlas     21842 Feb 25 08:09 stderr.txt
[2025-02-25 08:09:43] HITS file was successfully produced:
[2025-02-25 08:09:43] -rw------- 1 boincer umatlas 189666178 Feb 25 08:08 shared/HITS.pool.root.1
[2025-02-25 08:09:43]  *** Contents of shared directory: ***
[2025-02-25 08:09:43] total 434112
[2025-02-25 08:09:43] -rw-r--r-- 2 boincer umatlas    503549 Feb 25 06:43 input.tar.gz
[2025-02-25 08:09:43] -rw-r--r-- 2 boincer umatlas 253463069 Feb 25 06:43 ATLAS.root_0
[2025-02-25 08:09:43] -rw-r--r-- 2 boincer umatlas     17569 Feb 25 06:43 start_atlas.sh
[2025-02-25 08:09:43] -rw------- 1 boincer umatlas 189666178 Feb 25 08:08 HITS.pool.root.1
[2025-02-25 08:09:43] -rw------- 1 boincer umatlas    870400 Feb 25 08:09 result.tar.gz
08:09:45 (5015): run_atlas exited; CPU time 48085.484536
08:09:45 (5015): called boinc_finish(0)

</stderr_txt>
]]>

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