Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:32:25 (791284): wrapper (7.7.26015): starting
23:32:25 (791284): wrapper: running run_atlas (--nthreads 4)
[2025-02-26 23:32:25] Arguments: --nthreads 4
[2025-02-26 23:32:25] Threads: 4
[2025-02-26 23:32:25] Checking for CVMFS
[2025-02-26 23:32:25] No cvmfs_config command found, will try listing directly
[2025-02-26 23:32:25] CVMFS is ok
[2025-02-26 23:32:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-26 23:32:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-26 23:32:25] Further information can be found at the LHC@home message board.
[2025-02-26 23:32:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-26 23:32:25] Checking for apptainer binary...
[2025-02-26 23:32:25] which: no apptainer in ((null))
[2025-02-26 23:32:25] apptainer is not installed, using version from CVMFS
[2025-02-26 23:32:25] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-26 23:32:25] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2025-02-26 23:32:25] apptainer works
[2025-02-26 23:32:25] Set ATHENA_PROC_NUMBER=4
[2025-02-26 23:32:25] Set ATHENA_CORE_NUMBER=4
[2025-02-26 23:32:25] Starting ATLAS job with PandaID=6524045592
[2025-02-26 23:32:25] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-27 05:34:03]  *** The last 200 lines of the pilot log: ***
[2025-02-27 05:34:03] 2025-02-27 04:33:43,362 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-02-27 05:34:03] 2025-02-27 04:33:43,362 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-02-27 05:34:03] 2025-02-27 04:33:43,368 | INFO     | fitting pss+swap vs Time
[2025-02-27 05:34:03] 2025-02-27 04:33:43,369 | INFO     | model: linear, x: [1740609193.0, 1740609254.0, 1740609315.0, 1740609376.0, 1740609437.0, 1740609498.0, 1740609559.0, 1740609620.0, 1740609681.0, 1740609742.0, 1740
[2025-02-27 05:34:03] 2025-02-27 04:33:43,369 | INFO     | sum of square deviations: 13872669410.0
[2025-02-27 05:34:03] 2025-02-27 04:33:43,372 | INFO     | sum of deviations: 112976332037.00005
[2025-02-27 05:34:03] 2025-02-27 04:33:43,373 | INFO     | mean x: 1740619990.0
[2025-02-27 05:34:03] 2025-02-27 04:33:43,373 | INFO     | mean y: 2334300.166197183
[2025-02-27 05:34:03] 2025-02-27 04:33:43,373 | INFO     | -- intersect: -14172937677.318323
[2025-02-27 05:34:03] 2025-02-27 04:33:43,373 | INFO     | intersect: -14172937677.318323
[2025-02-27 05:34:03] 2025-02-27 04:33:43,373 | INFO     | chi2: 4.0674172440892145
[2025-02-27 05:34:03] 2025-02-27 04:33:43,374 | INFO     | model: linear, x: [1740609193.0, 1740609254.0, 1740609315.0, 1740609376.0, 1740609437.0, 1740609498.0, 1740609559.0, 1740609620.0, 1740609681.0, 1740609742.0, 1740
[2025-02-27 05:34:03] 2025-02-27 04:33:43,374 | INFO     | sum of square deviations: 13294714387.5
[2025-02-27 05:34:03] 2025-02-27 04:33:43,377 | INFO     | sum of deviations: 133027374704.5
[2025-02-27 05:34:03] 2025-02-27 04:33:43,377 | INFO     | mean x: 1740619837.5
[2025-02-27 05:34:03] 2025-02-27 04:33:43,378 | INFO     | mean y: 2339523.9514285713
[2025-02-27 05:34:03] 2025-02-27 04:33:43,378 | INFO     | -- intersect: -17414363128.86428
[2025-02-27 05:34:03] 2025-02-27 04:33:43,378 | INFO     | intersect: -17414363128.86428
[2025-02-27 05:34:03] 2025-02-27 04:33:43,378 | INFO     | chi2: 3.3179617440336493
[2025-02-27 05:34:03] 2025-02-27 04:33:43,378 | INFO     | current chi2=3.3179617440336493 (change=18.425832784789332 %)
[2025-02-27 05:34:03] 2025-02-27 04:33:43,378 | INFO     | right removable region: 349
[2025-02-27 05:34:03] 2025-02-27 04:33:43,379 | INFO     | model: linear, x: [1740609498.0, 1740609559.0, 1740609620.0, 1740609681.0, 1740609742.0, 1740609803.0, 1740609864.0, 1740609925.0, 1740609986.0, 1740610047.0, 1740
[2025-02-27 05:34:03] 2025-02-27 04:33:43,379 | INFO     | sum of square deviations: 13294714387.5
[2025-02-27 05:34:03] 2025-02-27 04:33:43,382 | INFO     | sum of deviations: 38902390344.0
[2025-02-27 05:34:03] 2025-02-27 04:33:43,382 | INFO     | mean x: 1740620142.5
[2025-02-27 05:34:03] 2025-02-27 04:33:43,382 | INFO     | mean y: 2353797.9942857143
[2025-02-27 05:34:03] 2025-02-27 04:33:43,382 | INFO     | -- intersect: -5090969928.300312
[2025-02-27 05:34:03] 2025-02-27 04:33:43,383 | INFO     | intersect: -5090969928.300312
[2025-02-27 05:34:03] 2025-02-27 04:33:43,383 | INFO     | chi2: 2.058737793081628
[2025-02-27 05:34:03] 2025-02-27 04:33:43,383 | INFO     | current chi2=2.058737793081628 (change=49.38464215655786 %)
[2025-02-27 05:34:03] 2025-02-27 04:33:43,383 | INFO     | model: linear, x: [1740609803.0, 1740609864.0, 1740609925.0, 1740609986.0, 1740610047.0, 1740610108.0, 1740610169.0, 1740610230.0, 1740610291.0, 1740610352.0, 1740
[2025-02-27 05:34:03] 2025-02-27 04:33:43,386 | INFO     | sum of square deviations: 12733038740.0
[2025-02-27 05:34:03] 2025-02-27 04:33:43,389 | INFO     | sum of deviations: -22071576747.000004
[2025-02-27 05:34:03] 2025-02-27 04:33:43,389 | INFO     | mean x: 1740620295.0
[2025-02-27 05:34:03] 2025-02-27 04:33:43,389 | INFO     | mean y: 2370354.7855072464
[2025-02-27 05:34:03] 2025-02-27 04:33:43,389 | INFO     | -- intersect: 3019578989.1855536
[2025-02-27 05:34:03] 2025-02-27 04:33:43,389 | INFO     | intersect: 3019578989.1855536
[2025-02-27 05:34:03] 2025-02-27 04:33:43,390 | INFO     | chi2: 0.863203082662498
[2025-02-27 05:34:03] 2025-02-27 04:33:43,390 | INFO     | current chi2=0.863203082662498 (change=58.0712470736543 %)
[2025-02-27 05:34:03] 2025-02-27 04:33:43,390 | INFO     | model: linear, x: [1740610108.0, 1740610169.0, 1740610230.0, 1740610291.0, 1740610352.0, 1740610413.0, 1740610474.0, 1740610535.0, 1740610596.0, 1740610657.0, 1740
[2025-02-27 05:34:03] 2025-02-27 04:33:43,390 | INFO     | sum of square deviations: 12187409905.0
[2025-02-27 05:34:03] 2025-02-27 04:33:43,393 | INFO     | sum of deviations: -29282277770.49999
[2025-02-27 05:34:03] 2025-02-27 04:33:43,393 | INFO     | mean x: 1740620447.5
[2025-02-27 05:34:03] 2025-02-27 04:33:43,393 | INFO     | mean y: 2372346.155882353
[2025-02-27 05:34:03] 2025-02-27 04:33:43,393 | INFO     | -- intersect: 4184502251.8544135
[2025-02-27 05:34:03] 2025-02-27 04:33:43,394 | INFO     | intersect: 4184502251.8544135
[2025-02-27 05:34:03] 2025-02-27 04:33:43,394 | INFO     | chi2: 0.8063171769617955
[2025-02-27 05:34:03] 2025-02-27 04:33:43,394 | INFO     | current chi2=0.8063171769617955 (change=6.590095290813994 %)
[2025-02-27 05:34:03] 2025-02-27 04:33:43,394 | INFO     | left removable region: 30
[2025-02-27 05:34:03] 2025-02-27 04:33:43,394 | INFO     | model: linear, x: [1740611023.0, 1740611084.0, 1740611145.0, 1740611206.0, 1740611267.0, 1740611328.0, 1740611389.0, 1740611450.0, 1740611511.0, 1740611572.0, 1740
[2025-02-27 05:34:03] 2025-02-27 04:33:43,395 | INFO     | sum of square deviations: 10065751520.0
[2025-02-27 05:34:03] 2025-02-27 04:33:43,397 | INFO     | sum of deviations: 5726312963.0
[2025-02-27 05:34:03] 2025-02-27 04:33:43,397 | INFO     | mean x: 1740620722.0
[2025-02-27 05:34:03] 2025-02-27 04:33:43,398 | INFO     | mean y: 2374070.670846395
[2025-02-27 05:34:03] 2025-02-27 04:33:43,398 | INFO     | -- intersect: -987848962.7758425
[2025-02-27 05:34:03] 2025-02-27 04:33:43,398 | INFO     | intersect: -987848962.7758425
[2025-02-27 05:34:03] 2025-02-27 04:33:43,398 | INFO     | chi2: 0.012212957485449032
[2025-02-27 05:34:03] 2025-02-27 04:33:43,398 | INFO     | -- intersect: -987848962.7758425
[2025-02-27 05:34:03] 2025-02-27 04:33:43,398 | INFO     | current memory leak: 0.57 B/s (using 319 data points, chi2=0.01)
[2025-02-27 05:34:03] 2025-02-27 04:33:43,399 | INFO     | ..............................
[2025-02-27 05:34:03] 2025-02-27 04:33:43,399 | INFO     | . Timing measurements:
[2025-02-27 05:34:03] 2025-02-27 04:33:43,399 | INFO     | . get job = 0 s
[2025-02-27 05:34:03] 2025-02-27 04:33:43,399 | INFO     | . initial setup = 1 s
[2025-02-27 05:34:03] 2025-02-27 04:33:43,400 | INFO     | . payload setup = 8 s
[2025-02-27 05:34:03] 2025-02-27 04:33:43,400 | INFO     | . stage-in = 0 s
[2025-02-27 05:34:03] 2025-02-27 04:33:43,400 | INFO     | . payload execution = 21625 s
[2025-02-27 05:34:03] 2025-02-27 04:33:43,400 | INFO     | . stage-out = 1 s
[2025-02-27 05:34:03] 2025-02-27 04:33:43,400 | INFO     | . log creation = 0 s
[2025-02-27 05:34:03] 2025-02-27 04:33:43,400 | INFO     | ..............................
[2025-02-27 05:34:03] 2025-02-27 04:33:43,682 | INFO     | 
[2025-02-27 05:34:03] 2025-02-27 04:33:43,682 | INFO     | job summary report
[2025-02-27 05:34:03] 2025-02-27 04:33:43,682 | INFO     | --------------------------------------------------
[2025-02-27 05:34:03] 2025-02-27 04:33:43,683 | INFO     | PanDA job id: 6524045592
[2025-02-27 05:34:03] 2025-02-27 04:33:43,683 | INFO     | task id: 43205094
[2025-02-27 05:34:03] 2025-02-27 04:33:43,683 | INFO     | errors: (none)
[2025-02-27 05:34:03] 2025-02-27 04:33:43,683 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-27 05:34:03] 2025-02-27 04:33:43,683 | INFO     | pilot state: finished 
[2025-02-27 05:34:03] 2025-02-27 04:33:43,683 | INFO     | transexitcode: 0
[2025-02-27 05:34:03] 2025-02-27 04:33:43,683 | INFO     | exeerrorcode: 0
[2025-02-27 05:34:03] 2025-02-27 04:33:43,683 | INFO     | exeerrordiag: 
[2025-02-27 05:34:03] 2025-02-27 04:33:43,683 | INFO     | exitcode: 0
[2025-02-27 05:34:03] 2025-02-27 04:33:43,683 | INFO     | exitmsg: OK
[2025-02-27 05:34:03] 2025-02-27 04:33:43,683 | INFO     | cpuconsumptiontime: 82663 s
[2025-02-27 05:34:03] 2025-02-27 04:33:43,684 | INFO     | nevents: 400
[2025-02-27 05:34:03] 2025-02-27 04:33:43,684 | INFO     | neventsw: 0
[2025-02-27 05:34:03] 2025-02-27 04:33:43,684 | INFO     | pid: 807550
[2025-02-27 05:34:03] 2025-02-27 04:33:43,684 | INFO     | pgrp: 807550
[2025-02-27 05:34:03] 2025-02-27 04:33:43,684 | INFO     | corecount: 4
[2025-02-27 05:34:03] 2025-02-27 04:33:43,684 | INFO     | event service: False
[2025-02-27 05:34:03] 2025-02-27 04:33:43,684 | INFO     | sizes: {0: 2363780, 1: 2363780, 7: 2364014, 11: 2364042, 21637: 2397413, 21639: 2406376, 21640: 2406560, 21646: 2406730}
[2025-02-27 05:34:03] 2025-02-27 04:33:43,684 | INFO     | --------------------------------------------------
[2025-02-27 05:34:03] 2025-02-27 04:33:43,684 | INFO     | 
[2025-02-27 05:34:03] 2025-02-27 04:33:43,684 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/0
[2025-02-27 05:34:03] 2025-02-27 04:33:43,714 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-27 05:34:03] 2025-02-27 04:33:43,714 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-27 05:34:03] 2025-02-27 04:33:43,715 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-27 05:34:03] 2025-02-27 04:33:43,715 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-27 05:34:03] 2025-02-27 04:33:43,715 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-27 05:34:03] 2025-02-27 04:33:43,715 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-27 05:34:03] 2025-02-27 04:33:43,715 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-27 05:34:03] 2025-02-27 04:33:43,715 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-27 05:34:03] 2025-02-27 04:33:43,715 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-27 05:34:03] 2025-02-27 04:33:43,716 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-27 05:34:03] 2025-02-27 04:33:43,716 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-27 05:34:03] 2025-02-27 04:33:43,716 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-27 05:34:03] 2025-02-27 04:33:43,716 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-27 05:34:03] 2025-02-27 04:33:43,716 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-27 05:34:03] 2025-02-27 04:33:43,716 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-27 05:34:03] 2025-02-27 04:33:43,716 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-27 05:34:03] 2025-02-27 04:33:43,716 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-27 05:34:03] 2025-02-27 04:33:43,717 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-27 05:34:03] 2025-02-27 04:33:43,717 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-27 05:34:03] 2025-02-27 04:33:43,717 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-27 05:34:03] 2025-02-27 04:33:43,717 | INFO     | job 6524045592 has completed (purged errors)
[2025-02-27 05:34:03] 2025-02-27 04:33:43,717 | INFO     | overall cleanup function is called
[2025-02-27 05:34:03] 2025-02-27 04:33:44,726 | INFO     | --- collectZombieJob: --- 10, [807550]
[2025-02-27 05:34:03] 2025-02-27 04:33:44,726 | INFO     | zombie collector waiting for pid 807550
[2025-02-27 05:34:03] 2025-02-27 04:33:44,726 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-27 05:34:03] 2025-02-27 04:33:44,727 | INFO     | collected zombie processes
[2025-02-27 05:34:03] 2025-02-27 04:33:44,727 | INFO     | will attempt to kill all subprocesses of pid=807550
[2025-02-27 05:34:03] 2025-02-27 04:33:45,017 | INFO     | process IDs to be killed: [807550] (in reverse order)
[2025-02-27 05:34:03] 2025-02-27 04:33:45,272 | WARNING  | found no corresponding commands to process id(s)
[2025-02-27 05:34:03] 2025-02-27 04:33:45,272 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-27 05:34:03] 2025-02-27 04:33:45,294 | INFO     | did not find any defunct processes belonging to 807550
[2025-02-27 05:34:03] 2025-02-27 04:33:45,313 | INFO     | did not find any defunct processes belonging to 807550
[2025-02-27 05:34:03] 2025-02-27 04:33:45,314 | INFO     | ready for new job
[2025-02-27 05:34:03] 2025-02-27 04:33:45,314 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-27 05:34:03] 2025-02-27 04:33:45,317 | INFO     | **************************************
[2025-02-27 05:34:03] 2025-02-27 04:33:45,317 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-27 05:34:03] 2025-02-27 04:33:45,317 | INFO     | **************************************
[2025-02-27 05:34:03] 2025-02-27 04:33:45,317 | INFO     | 
[2025-02-27 05:34:03] 2025-02-27 04:33:45,325 | INFO     | architecture information:
[2025-02-27 05:34:03] 2025-02-27 04:33:45,325 | INFO     | executing command: cat /etc/os-release
[2025-02-27 05:34:03] 2025-02-27 04:33:45,345 | INFO     | cat /etc/os-release:
[2025-02-27 05:34:03] NAME="CentOS Linux"
[2025-02-27 05:34:03] VERSION="7 (Core)"
[2025-02-27 05:34:03] ID="centos"
[2025-02-27 05:34:03] ID_LIKE="rhel fedora"
[2025-02-27 05:34:03] VERSION_ID="7"
[2025-02-27 05:34:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-27 05:34:03] ANSI_COLOR="0;31"
[2025-02-27 05:34:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-27 05:34:03] HOME_URL="https://www.centos.org/"
[2025-02-27 05:34:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-27 05:34:03] 
[2025-02-27 05:34:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-27 05:34:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-27 05:34:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-27 05:34:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-27 05:34:03] 
[2025-02-27 05:34:03] 2025-02-27 04:33:45,346 | INFO     | **************************************
[2025-02-27 05:34:03] 2025-02-27 04:33:45,848 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/0
[2025-02-27 05:34:03] 2025-02-27 04:33:45,873 | INFO     | sufficient remaining disk space (3348916862976 B)
[2025-02-27 05:34:03] 2025-02-27 04:33:45,873 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-27 05:34:03] 2025-02-27 04:33:45,874 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-27 05:34:03] 2025-02-27 04:33:46,013 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-27 05:34:03] 2025-02-27 04:33:46,014 | INFO     | aborting loop
[2025-02-27 05:34:03] 2025-02-27 04:33:46,271 | INFO     | all job control threads have been joined
[2025-02-27 05:34:03] 2025-02-27 04:33:46,336 | INFO     | all payload control threads have been joined
[2025-02-27 05:34:03] 2025-02-27 04:33:46,351 | INFO     | found 0 job(s) in 20 queues
[2025-02-27 05:34:03] 2025-02-27 04:33:46,352 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-27 05:34:03] 2025-02-27 04:33:46,352 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-27 05:34:03] 2025-02-27 04:33:46,588 | INFO     | all data control threads have been joined
[2025-02-27 05:34:03] 2025-02-27 04:33:46,748 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-27 05:34:03] 2025-02-27 04:33:46,878 | INFO     | [job] retrieve thread has finished
[2025-02-27 05:34:03] 2025-02-27 04:33:47,018 | INFO     | [job] job monitor thread has finished
[2025-02-27 05:34:03] 2025-02-27 04:33:47,136 | INFO     | [payload] validate_post thread has finished
[2025-02-27 05:34:03] 2025-02-27 04:33:47,189 | INFO     | [data] copytool_in thread has finished
[2025-02-27 05:34:03] 2025-02-27 04:33:47,276 | INFO     | [job] control thread has finished
[2025-02-27 05:34:03] 2025-02-27 04:33:47,342 | INFO     | [payload] control thread has finished
[2025-02-27 05:34:03] 2025-02-27 04:33:47,543 | INFO     | [payload] validate_pre thread has finished
[2025-02-27 05:34:03] 2025-02-27 04:33:47,593 | INFO     | [data] control thread has finished
[2025-02-27 05:34:03] 2025-02-27 04:33:47,829 | INFO     | [payload] execute_payloads thread has finished
[2025-02-27 05:34:03] 2025-02-27 04:33:47,871 | INFO     | [job] create_data_payload thread has finished
[2025-02-27 05:34:03] 2025-02-27 04:33:47,909 | INFO     | [job] validate thread has finished
[2025-02-27 05:34:03] 2025-02-27 04:33:47,980 | INFO     | [payload] failed_post thread has finished
[2025-02-27 05:34:03] 2025-02-27 04:33:48,204 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-27 05:34:03] 2025-02-27 04:33:48,505 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-27 05:34:03] 2025-02-27 04:33:48,753 | INFO     | [data] copytool_out thread has finished
[2025-02-27 05:34:03] 2025-02-27 04:33:49,510 | INFO     | [job] queue monitor thread has finished
[2025-02-27 05:34:03] 2025-02-27 04:33:52,210 | INFO     | [data] queue_monitor thread has finished
[2025-02-27 05:34:03] 2025-02-27 04:33:56,783 | INFO     | job.realtimelogging is not enabled
[2025-02-27 05:34:03] 2025-02-27 04:33:57,790 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-27 05:34:03] 2025-02-27 04:33:57,874 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23183127615296)>', '<ExcThread(monitor, started 23182419420928)>']
[2025-02-27 05:34:03] 2025-02-27 04:33:58,407 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-27 05:34:03] 2025-02-27 04:33:58,408 | INFO     | [monitor] control thread has ended
[2025-02-27 05:34:03] 2025-02-27 04:34:02,900 | INFO     | all workflow threads have been joined
[2025-02-27 05:34:03] 2025-02-27 04:34:02,900 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-27 05:34:03] 2025-02-27 04:34:02,901 | INFO     | traces error code: 0
[2025-02-27 05:34:03] 2025-02-27 04:34:02,901 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-27 05:34:03] 2025-02-27 04:34:03,045 [wrapper] ==== pilot stdout END ====
[2025-02-27 05:34:03] 2025-02-27 04:34:03,049 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-27 05:34:03] 2025-02-27 04:34:03,053 [wrapper] pilotpid: 797575
[2025-02-27 05:34:03] 2025-02-27 04:34:03,056 [wrapper] Pilot exit status: 0
[2025-02-27 05:34:03] 2025-02-27 04:34:03,071 [wrapper] pandaids: 6524045592
[2025-02-27 05:34:03] 2025-02-27 04:34:03,207 [wrapper] cleanup supervisor_pilot 2448248 797576
[2025-02-27 05:34:03] 2025-02-27 04:34:03,211 [wrapper] Test setup, not cleaning
[2025-02-27 05:34:03] 2025-02-27 04:34:03,220 [wrapper] apfmon messages muted
[2025-02-27 05:34:03] 2025-02-27 04:34:03,225 [wrapper] ==== wrapper stdout END ====
[2025-02-27 05:34:03] 2025-02-27 04:34:03,229 [wrapper] ==== wrapper stderr END ====
[2025-02-27 05:34:03]  *** Error codes and diagnostics ***
[2025-02-27 05:34:03]     "exeErrorCode": 0,
[2025-02-27 05:34:03]     "exeErrorDiag": "",
[2025-02-27 05:34:03]     "pilotErrorCode": 0,
[2025-02-27 05:34:03]     "pilotErrorDiag": "",
[2025-02-27 05:34:03]  *** Listing of results directory ***
[2025-02-27 05:34:03] total 667400
[2025-02-27 05:34:03] -rw-r--r-- 1 boinc boinc    491065 Feb 23 09:18 pilot3.tar.gz
[2025-02-27 05:34:03] -rw-r--r-- 1 boinc boinc      5118 Feb 23 09:21 queuedata.json
[2025-02-27 05:34:03] -rwx------ 1 boinc boinc     35865 Feb 23 09:24 runpilot2-wrapper.sh
[2025-02-27 05:34:03] -rw-r--r-- 1 boinc boinc       100 Feb 26 23:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-27 05:34:03] -rwxr-xr-x 1 boinc boinc      7986 Feb 26 23:32 run_atlas
[2025-02-27 05:34:03] -rw-r--r-- 1 boinc boinc       105 Feb 26 23:32 job.xml
[2025-02-27 05:34:03] -rw-r--r-- 2 boinc boinc 347952269 Feb 26 23:32 EVNT.43092757._001980.pool.root.1
[2025-02-27 05:34:03] -rw-r--r-- 1 boinc boinc      6677 Feb 26 23:32 init_data.xml
[2025-02-27 05:34:03] drwxrwx--x 2 boinc boinc      4096 Feb 26 23:32 shared
[2025-02-27 05:34:03] -rw-r--r-- 2 boinc boinc    503561 Feb 26 23:32 input.tar.gz
[2025-02-27 05:34:03] -rw-r--r-- 2 boinc boinc     17569 Feb 26 23:32 start_atlas.sh
[2025-02-27 05:34:03] -rw-r--r-- 1 boinc boinc         0 Feb 26 23:32 boinc_lockfile
[2025-02-27 05:34:03] -rw-r--r-- 1 boinc boinc      2548 Feb 26 23:32 pandaJob.out
[2025-02-27 05:34:03] -rw------- 1 boinc boinc       424 Feb 26 23:32 setup.sh.local
[2025-02-27 05:34:03] -rw------- 1 boinc boinc    989821 Feb 26 23:32 agis_schedconf.cvmfs.json
[2025-02-27 05:34:03] drwx------ 4 boinc boinc      4096 Feb 26 23:32 pilot3
[2025-02-27 05:34:03] -rw------- 1 boinc boinc 326175153 Feb 27 05:32 HITS.43205094._038668.pool.root.1
[2025-02-27 05:34:03] -rw-r--r-- 1 boinc boinc       532 Feb 27 05:32 boinc_task_state.xml
[2025-02-27 05:34:03] -rw------- 1 boinc boinc        95 Feb 27 05:33 pilot_heartbeat.json
[2025-02-27 05:34:03] -rw------- 1 boinc boinc      1024 Feb 27 05:33 memory_monitor_summary.json
[2025-02-27 05:34:03] -rw------- 1 boinc boinc   1569202 Feb 27 05:33 agis_ddmendpoints.agis.ALL.json
[2025-02-27 05:34:03] -rw------- 1 boinc boinc    434386 Feb 27 05:33 log.43205094._038668.job.log.tgz.1
[2025-02-27 05:34:03] -rw------- 1 boinc boinc      7692 Feb 27 05:33 heartbeat.json
[2025-02-27 05:34:03] -rw-r--r-- 1 boinc boinc      8192 Feb 27 05:33 boinc_mmap_file
[2025-02-27 05:34:03] -rw-r--r-- 1 boinc boinc        28 Feb 27 05:33 wrapper_checkpoint.txt
[2025-02-27 05:34:03] -rw------- 1 boinc boinc      4298 Feb 27 05:34 pilotlog.txt
[2025-02-27 05:34:03] -rw------- 1 boinc boinc   2313287 Feb 27 05:34 log.43205094._038668.job.log.1
[2025-02-27 05:34:03] -rw------- 1 boinc boinc       357 Feb 27 05:34 output.list
[2025-02-27 05:34:03] -rw-r--r-- 1 boinc boinc       620 Feb 27 05:34 runtime_log
[2025-02-27 05:34:03] -rw------- 1 boinc boinc   2764800 Feb 27 05:34 result.tar.gz
[2025-02-27 05:34:03] -rw-r--r-- 1 boinc boinc     11424 Feb 27 05:34 runtime_log.err
[2025-02-27 05:34:03] -rw------- 1 boinc boinc       667 Feb 27 05:34 1nqNDmsSM66nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmDGvKDmsoxRTn.diag
[2025-02-27 05:34:03] -rw-r--r-- 1 boinc boinc     21273 Feb 27 05:34 stderr.txt
[2025-02-27 05:34:03] HITS file was successfully produced:
[2025-02-27 05:34:03] -rw------- 1 boinc boinc 326175153 Feb 27 05:32 shared/HITS.pool.root.1
[2025-02-27 05:34:03]  *** Contents of shared directory: ***
[2025-02-27 05:34:03] total 661552
[2025-02-27 05:34:03] -rw-r--r-- 2 boinc boinc 347952269 Feb 26 23:32 ATLAS.root_0
[2025-02-27 05:34:03] -rw-r--r-- 2 boinc boinc    503561 Feb 26 23:32 input.tar.gz
[2025-02-27 05:34:03] -rw-r--r-- 2 boinc boinc     17569 Feb 26 23:32 start_atlas.sh
[2025-02-27 05:34:03] -rw------- 1 boinc boinc 326175153 Feb 27 05:32 HITS.pool.root.1
[2025-02-27 05:34:03] -rw------- 1 boinc boinc   2764800 Feb 27 05:34 result.tar.gz
05:34:04 (791284): run_atlas exited; CPU time 82345.478632
05:34:04 (791284): called boinc_finish(0)

</stderr_txt>
]]>

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