Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-23 13:38:38 (42917): Detected: vboxwrapper 26206
2025-02-23 13:38:38 (42917): Detected: BOINC client v8.0.4
2025-02-23 13:38:38 (42917): Detected: VirtualBox VboxManage Interface (Version: 6.1.44)
2025-02-23 13:38:38 (42917): Detected: Sandbox Configuration Enabled
2025-02-23 13:38:38 (42917): Successfully copied 'init_data.xml' to the shared directory.
2025-02-23 13:38:38 (42917): Create VM. (boinc_9bcc7cd534d12360, slot#2)
2025-02-23 13:38:38 (42917): Setting Memory Size for VM. (4200MB)
2025-02-23 13:38:38 (42917): Setting CPU Count for VM. (2)
2025-02-23 13:38:38 (42917): Setting Chipset Options for VM.
2025-02-23 13:38:38 (42917): Setting Graphics Controller Options for VM.
2025-02-23 13:38:39 (42917): Setting Boot Options for VM.
2025-02-23 13:38:39 (42917): Setting Network Configuration for NAT.
2025-02-23 13:38:39 (42917): Enabling VM Network Access.
2025-02-23 13:38:39 (42917): Disabling USB Support for VM.
2025-02-23 13:38:39 (42917): Disabling COM Port Support for VM.
2025-02-23 13:38:39 (42917): Disabling Audio Support for VM.
2025-02-23 13:38:39 (42917): Disabling Clipboard Support for VM.
2025-02-23 13:38:39 (42917): Disabling Drag and Drop Support for VM.
2025-02-23 13:38:39 (42917): Adding storage controller(s) to VM.
2025-02-23 13:38:39 (42917): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-23 13:38:39 (42917): Adding VirtualBox Guest Additions to VM.
2025-02-23 13:38:39 (42917): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-23 13:38:39 (42917): forwarding host port 60203 to guest port 80
2025-02-23 13:38:39 (42917): Enabling remote desktop for VM.
2025-02-23 13:38:39 (42917): Required extension pack not installed, remote desktop not enabled.
2025-02-23 13:38:39 (42917): Enabling shared directory for VM.
2025-02-23 13:38:40 (42917): Starting VM using VBoxManage interface. (boinc_9bcc7cd534d12360, slot#2)
2025-02-23 13:38:41 (42917): Successfully started VM. (PID = '42984')
2025-02-23 13:38:41 (42917): Reporting VM Process ID to BOINC.
2025-02-23 13:38:41 (42917): Guest Log: BIOS: VirtualBox 6.1.44
2025-02-23 13:38:41 (42917): Guest Log: CPUID EDX: 0x178bfbff
2025-02-23 13:38:41 (42917): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-23 13:38:41 (42917): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-23 13:38:41 (42917): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-23 13:38:41 (42917): Detected: Web Application Enabled (http://localhost:60203)
2025-02-23 13:38:41 (42917): Preference change detected
2025-02-23 13:38:41 (42917): Setting CPU throttle for VM. (100%)
2025-02-23 13:38:41 (42917): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-23 13:38:43 (42917): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-23 13:38:43 (42917): Guest Log: BIOS: Booting from Hard Disk...
2025-02-23 13:39:05 (42917): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-23 13:39:05 (42917): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-23 13:39:05 (42917): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-23 13:39:05 (42917): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-23 13:39:05 (42917): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-23 13:39:05 (42917): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-23 13:39:05 (42917): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-23 13:39:05 (42917): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-23 13:39:05 (42917): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-23 13:39:05 (42917): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-23 13:39:05 (42917): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-23 13:39:05 (42917): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-23 13:39:05 (42917): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-23 13:39:05 (42917): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-23 13:39:05 (42917): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-23 13:39:05 (42917): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-23 13:39:05 (42917): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-23 13:39:05 (42917): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-23 13:39:05 (42917): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-23 13:39:05 (42917): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-23 13:39:05 (42917): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-23 13:39:05 (42917): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-23 13:39:05 (42917): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-23 13:39:05 (42917): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-23 13:39:05 (42917): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-23 13:39:05 (42917): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-23 13:39:05 (42917): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-23 13:39:05 (42917): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-23 13:39:05 (42917): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-23 13:39:05 (42917): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-23 13:39:05 (42917): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-23 13:39:05 (42917): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-23 13:39:15 (42917): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-23 13:39:15 (42917): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-23 13:39:30 (42917): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-23 13:39:30 (42917): Guest Log: 00:00:00.000220 main     Log opened 2025-02-23T12:39:28.710856000Z
2025-02-23 13:39:30 (42917): Guest Log: 00:00:00.000367 main     OS Product: Linux
2025-02-23 13:39:30 (42917): Guest Log: 00:00:00.000435 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-23 13:39:30 (42917): Guest Log: 00:00:00.000496 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-23 13:39:30 (42917): Guest Log: 00:00:00.000557 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-23 13:39:30 (42917): Guest Log: 00:00:00.000558 main     Process ID: 1232
2025-02-23 13:39:30 (42917): Guest Log: 00:00:00.000559 main     Package type: LINUX_64BITS_GENERIC
2025-02-23 13:39:30 (42917): Guest Log: 00:00:00.002392 main     5.2.32 r132073 started. Verbose level = 0
2025-02-23 13:39:31 (42917): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-23 13:39:31 (42917): Guest Log: [INFO] Mounting shared directory
2025-02-23 13:39:31 (42917): Guest Log: [INFO] Checking for init_data.xml
2025-02-23 13:39:35 (42917): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-23 13:39:35 (42917): Guest Log: [INFO] Detected branch: prod
2025-02-23 13:39:35 (42917): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-23 13:39:35 (42917): Guest Log: Copying input files
2025-02-23 13:39:37 (42917): Guest Log: Copied input files into RunAtlas.
2025-02-23 13:39:37 (42917): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-23 13:39:37 (42917): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-23 13:39:37 (42917): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-23 13:39:37 (42917): Guest Log: Further information can be found at the LHC@home message board.
2025-02-23 13:39:47 (42917): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-23 13:39:47 (42917): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-23 13:39:47 (42917): Guest Log: 2.6.3.0 1508 0 30056 142976 3 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-02-23 13:39:50 (42917): Guest Log: copied the webapp to /var/www
2025-02-23 13:39:50 (42917): Guest Log: ATHENA_PROC_NUMBER=2
2025-02-23 13:39:50 (42917): Guest Log: ATHENA_CORE_NUMBER=2
2025-02-23 13:39:50 (42917): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-23 13:39:50 (42917): Guest Log:  *** Starting ATLAS job. (PandaID=6523759996 taskID=43205094) ***
2025-02-23 13:42:35 (42917): Guest Log:  *** Job finished ***
2025-02-23 13:42:35 (42917): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-23 13:42:35 (42917): Guest Log: 2025-02-23 12:42:23,062 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-02-23 13:42:35 (42917): Guest Log: 2025-02-23 12:42:24,064 | INFO     | [job] queue monitor thread has finished
2025-02-23 13:42:35 (42917): Guest Log: 2025-02-23 12:42:24,781 | INFO     | [data] queue_monitor thread has finished
2025-02-23 13:42:35 (42917): Guest Log: 2025-02-23 12:42:25,832 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140083331487552)>', '<ExcThread(monitor, started 140082866530048)>']
2025-02-23 13:42:35 (42917): Guest Log: 2025-02-23 12:42:26,091 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-23 13:42:35 (42917): Guest Log: 2025-02-23 12:42:26,091 | INFO     | [monitor] control thread has ended
2025-02-23 13:42:35 (42917): Guest Log: 2025-02-23 12:42:30,839 | INFO     | all workflow threads have been joined
2025-02-23 13:42:35 (42917): Guest Log: 2025-02-23 12:42:30,840 | INFO     | end of generic workflow (traces error code: 0)
2025-02-23 13:42:35 (42917): Guest Log: 2025-02-23 12:42:30,840 | INFO     | traces error code: 0
2025-02-23 13:42:35 (42917): Guest Log: 2025-02-23 12:42:30,840 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-23 13:42:35 (42917): Guest Log: 2025-02-23 12:42:30,936 [wrapper] ==== pilot stdout END ====
2025-02-23 13:42:35 (42917): Guest Log: 2025-02-23 12:42:30,944 [wrapper] ==== wrapper stdout RESUME ====
2025-02-23 13:42:35 (42917): Guest Log: 2025-02-23 12:42:30,951 [wrapper] pilotpid: 5807
2025-02-23 13:42:35 (42917): Guest Log: 2025-02-23 12:42:30,959 [wrapper] Pilot exit status: 0
2025-02-23 13:42:35 (42917): Guest Log: 2025-02-23 12:42:31,020 [wrapper] pandaids: 6523759996
2025-02-23 13:42:35 (42917): Guest Log: 2025-02-23 12:42:31,064 [wrapper] cleanup supervisor_pilot  5813 5808
2025-02-23 13:42:35 (42917): Guest Log: 2025-02-23 12:42:31,072 [wrapper] Test setup, not cleaning
2025-02-23 13:42:35 (42917): Guest Log: 2025-02-23 12:42:31,086 [wrapper] apfmon messages muted
2025-02-23 13:42:35 (42917): Guest Log: 2025-02-23 12:42:31,094 [wrapper] ==== wrapper stdout END ====
2025-02-23 13:42:35 (42917): Guest Log: 2025-02-23 12:42:31,101 [wrapper] ==== wrapper stderr END ====
2025-02-23 13:42:35 (42917): Guest Log:  *** Error codes and diagnostics ***
2025-02-23 13:42:35 (42917): Guest Log:     "exeErrorCode": 65,
2025-02-23 13:42:35 (42917): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
2025-02-23 13:42:35 (42917): Guest Log:     "pilotErrorCode": 1305,
2025-02-23 13:42:35 (42917): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute 2025-02-23 12:41:56,397 CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
2025-02-23 13:42:35 (42917): Guest Log:  *** Listing of results directory ***
2025-02-23 13:42:35 (42917): Guest Log: total 3816
2025-02-23 13:42:35 (42917): Guest Log: -rw-r--r--. 1 atlas atlas  491065 Feb 23 05:04 pilot3.tar.gz
2025-02-23 13:42:35 (42917): Guest Log: -rw-r--r--. 1 atlas atlas    5118 Feb 23 05:19 queuedata.json
2025-02-23 13:42:35 (42917): Guest Log: -rwx------. 1 atlas atlas   35865 Feb 23 05:19 runpilot2-wrapper.sh
2025-02-23 13:42:35 (42917): Guest Log: -rw-r--r--. 1 atlas atlas    8298 Feb 23 12:39 init_data.xml
2025-02-23 13:42:35 (42917): Guest Log: -rw-r-----. 1 atlas atlas  503556 Feb 23 12:39 input.tar.gz
2025-02-23 13:42:35 (42917): Guest Log: -rw-r-----. 1 atlas atlas   17569 Feb 23 12:39 start_atlas.sh
2025-02-23 13:42:35 (42917): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Feb 23 12:39 EVNT.43092757._001951.pool.root.1 -> /data/./ATLAS.root_0
2025-02-23 13:42:35 (42917): Guest Log: -rw-r--r--. 1 atlas atlas    2547 Feb 23 12:39 pandaJob.out
2025-02-23 13:42:35 (42917): Guest Log: -rw-------. 1 atlas atlas     424 Feb 23 12:39 setup.sh.local
2025-02-23 13:42:35 (42917): Guest Log: -rw-------. 1 atlas atlas  987736 Feb 23 12:40 agis_schedconf.cvmfs.json
2025-02-23 13:42:35 (42917): Guest Log: -rw-------. 1 atlas atlas 1582569 Feb 23 12:40 agis_ddmendpoints.agis.ALL.json
2025-02-23 13:42:35 (42917): Guest Log: drwx------. 4 atlas atlas    4096 Feb 23 12:40 pilot3
2025-02-23 13:42:35 (42917): Guest Log: -rw-------. 1 atlas atlas      95 Feb 23 12:41 pilot_heartbeat.json
2025-02-23 13:42:35 (42917): Guest Log: -rw-------. 1 atlas atlas     971 Feb 23 12:42 memory_monitor_summary.json
2025-02-23 13:42:35 (42917): Guest Log: -rw-------. 1 atlas atlas   20360 Feb 23 12:42 log.43205094._038178.job.log.tgz.1
2025-02-23 13:42:35 (42917): Guest Log: -rw-------. 1 atlas atlas    8426 Feb 23 12:42 heartbeat.json
2025-02-23 13:42:35 (42917): Guest Log: -rw-------. 1 atlas atlas    4398 Feb 23 12:42 pilotlog.txt
2025-02-23 13:42:35 (42917): Guest Log: -rw-------. 1 atlas atlas   66577 Feb 23 12:42 log.43205094._038178.job.log.1
2025-02-23 13:42:35 (42917): Guest Log: -rw-------. 1 atlas atlas     188 Feb 23 12:42 output.list
2025-02-23 13:42:35 (42917): Guest Log: -rw-r--r--. 1 atlas atlas     620 Feb 23 12:42 runtime_log
2025-02-23 13:42:35 (42917): Guest Log: -rw-------. 1 atlas atlas  102400 Feb 23 12:42 result.tar.gz
2025-02-23 13:42:35 (42917): Guest Log: -rw-------. 1 atlas atlas     651 Feb 23 12:42 TqEMDmdZJ66nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmK4uKDmQnw0jn.diag
2025-02-23 13:42:35 (42917): Guest Log: -rw-r--r--. 1 atlas atlas   10815 Feb 23 12:42 runtime_log.err
2025-02-23 13:42:35 (42917): Guest Log: Looking for outputfile HITS.43205094._038178.pool.root.1
2025-02-23 13:42:35 (42917): Guest Log: No HITS file was produced
2025-02-23 13:42:35 (42917): Guest Log: Successfully finished the ATLAS job!
2025-02-23 13:42:35 (42917): Guest Log: Copying the results back to the shared directory!
2025-02-23 13:42:35 (42917): Guest Log:  *** Contents of shared directory: ***
2025-02-23 13:42:35 (42917): Guest Log: total 336380
2025-02-23 13:42:35 (42917): Guest Log: -rw-rw----. 1 root root 343812463 Feb 23 12:38 ATLAS.root_0
2025-02-23 13:42:35 (42917): Guest Log: -rw-rw-r--. 1 root root      8298 Feb 23 12:38 init_data.xml
2025-02-23 13:42:35 (42917): Guest Log: -rw-rw----. 1 root root    503556 Feb 23 12:38 input.tar.gz
2025-02-23 13:42:35 (42917): Guest Log: -rw-r--r--. 1 root root    102400 Feb 23  2025 result.tar.gz
2025-02-23 13:42:35 (42917): Guest Log: -rw-rw----. 1 root root     17569 Feb 23 12:38 start_atlas.sh
2025-02-23 13:42:35 (42917): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-23 13:42:35 (42917): VM Completion File Detected.
2025-02-23 13:42:35 (42917): Powering off VM.
2025-02-23 13:42:35 (42917): Successfully stopped VM.
2025-02-23 13:42:35 (42917): Deregistering VM. (boinc_9bcc7cd534d12360, slot#2)
2025-02-23 13:42:35 (42917): Removing network bandwidth throttle group from VM.
2025-02-23 13:42:35 (42917): Removing VM from VirtualBox.
13:42:41 (42917): called boinc_finish(0)

</stderr_txt>
]]>

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