Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:43:28 (1969096): wrapper (7.7.26015): starting
23:43:28 (1969096): wrapper: running run_atlas (--nthreads 10)
[2025-02-22 23:43:28] Arguments: --nthreads 10
[2025-02-22 23:43:28] Threads: 10
[2025-02-22 23:43:28] Checking for CVMFS
[2025-02-22 23:43:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-02-22 23:43:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-02-22 23:43:30] Running cvmfs_config stat atlas.cern.ch
[2025-02-22 23:43:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-02-22 23:43:32] 2.11.5.0 1988508 74849 189700 142963 3 91 26479066 37641217 21927 130560 0 4164069 99.164 8827176 22500 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-02-22 23:43:32] CVMFS is ok
[2025-02-22 23:43:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-22 23:43:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-22 23:43:32] Further information can be found at the LHC@home message board.
[2025-02-22 23:43:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-22 23:43:32] Checking for apptainer binary...
[2025-02-22 23:43:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-02-22 23:43:32] Running /usr/bin/apptainer --version
[2025-02-22 23:43:32] apptainer version 1.3.6-1.el9
[2025-02-22 23:43:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-22 23:43:34] c-5-1.aglt2.org
[2025-02-22 23:43:34] apptainer works
[2025-02-22 23:43:34] Set ATHENA_PROC_NUMBER=10
[2025-02-22 23:43:34] Set ATHENA_CORE_NUMBER=10
[2025-02-22 23:43:34] Starting ATLAS job with PandaID=6523440079
[2025-02-22 23:43:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-23 16:38:12]  *** The last 200 lines of the pilot log: ***
[2025-02-23 16:38:12] 2025-02-23 21:37:32,803 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-23 16:38:12] 2025-02-23 21:37:34,194 | INFO     | CPU arch script returned: x86-64-v3
[2025-02-23 16:38:12] 2025-02-23 21:37:34,195 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6523440079/memory_monitor_summary.json (trf name=prmon)
[2025-02-23 16:38:12] 2025-02-23 21:37:34,195 | INFO     | extracted standard info from prmon json
[2025-02-23 16:38:12] 2025-02-23 21:37:34,196 | INFO     | extracted standard memory fields from prmon json
[2025-02-23 16:38:12] 2025-02-23 21:37:34,196 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-02-23 16:38:12] 2025-02-23 21:37:34,213 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-02-23 16:38:12] 2025-02-23 21:37:34,214 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-02-23 16:38:12] 2025-02-23 21:37:34,387 | INFO     | fitting pss+swap vs Time
[2025-02-23 16:38:12] 2025-02-23 21:37:34,388 | INFO     | model: linear, x: [1740286091.0, 1740286152.0, 1740286214.0, 1740286274.0, 1740286335.0, 1740286396.0, 1740286458.0, 1740286519.0, 1740286579.0, 1740286640.0, 1740
[2025-02-23 16:38:12] 2025-02-23 21:37:34,389 | INFO     | sum of square deviations: 302703267938.74
[2025-02-23 16:38:12] 2025-02-23 21:37:34,496 | INFO     | sum of deviations: 1290719717098.3337
[2025-02-23 16:38:12] 2025-02-23 21:37:34,496 | INFO     | mean x: 1740316317.065524
[2025-02-23 16:38:12] 2025-02-23 21:37:34,497 | INFO     | mean y: 2241426.1179435486
[2025-02-23 16:38:12] 2025-02-23 21:37:34,497 | INFO     | -- intersect: -7418427005.11623
[2025-02-23 16:38:12] 2025-02-23 21:37:34,497 | INFO     | intersect: -7418427005.11623
[2025-02-23 16:38:12] 2025-02-23 21:37:34,498 | INFO     | chi2: 9.834900186999368
[2025-02-23 16:38:12] 2025-02-23 21:37:34,499 | INFO     | model: linear, x: [1740286091.0, 1740286152.0, 1740286214.0, 1740286274.0, 1740286335.0, 1740286396.0, 1740286458.0, 1740286519.0, 1740286579.0, 1740286640.0, 1740
[2025-02-23 16:38:12] 2025-02-23 21:37:34,500 | INFO     | sum of square deviations: 298149284084.2694
[2025-02-23 16:38:12] 2025-02-23 21:37:34,528 | INFO     | sum of deviations: 1413280369754.554
[2025-02-23 16:38:12] 2025-02-23 21:37:34,536 | INFO     | mean x: 1740316164.567376
[2025-02-23 16:38:12] 2025-02-23 21:37:34,553 | INFO     | mean y: 2245520.209726444
[2025-02-23 16:38:12] 2025-02-23 21:37:34,554 | INFO     | -- intersect: -8247161081.935377
[2025-02-23 16:38:12] 2025-02-23 21:37:34,554 | INFO     | intersect: -8247161081.935377
[2025-02-23 16:38:12] 2025-02-23 21:37:34,555 | INFO     | chi2: 8.411568642224283
[2025-02-23 16:38:12] 2025-02-23 21:37:34,556 | INFO     | current chi2=8.411568642224283 (change=14.47225205860827 %)
[2025-02-23 16:38:12] 2025-02-23 21:37:34,556 | INFO     | right removable region: 986
[2025-02-23 16:38:12] 2025-02-23 21:37:34,557 | INFO     | model: linear, x: [1740286396.0, 1740286458.0, 1740286519.0, 1740286579.0, 1740286640.0, 1740286701.0, 1740286762.0, 1740286823.0, 1740286884.0, 1740286945.0, 1740
[2025-02-23 16:38:12] 2025-02-23 21:37:34,590 | INFO     | sum of square deviations: 298149062654.26965
[2025-02-23 16:38:12] 2025-02-23 21:37:34,768 | INFO     | sum of deviations: 1034811921945.6221
[2025-02-23 16:38:12] 2025-02-23 21:37:34,768 | INFO     | mean x: 1740316469.567376
[2025-02-23 16:38:12] 2025-02-23 21:37:34,768 | INFO     | mean y: 2249990.870314083
[2025-02-23 16:38:12] 2025-02-23 21:37:34,769 | INFO     | -- intersect: -6038017969.840802
[2025-02-23 16:38:12] 2025-02-23 21:37:34,769 | INFO     | intersect: -6038017969.840802
[2025-02-23 16:38:12] 2025-02-23 21:37:34,770 | INFO     | chi2: 6.847596125914847
[2025-02-23 16:38:12] 2025-02-23 21:37:34,770 | INFO     | current chi2=6.847596125914847 (change=30.374523424583415 %)
[2025-02-23 16:38:12] 2025-02-23 21:37:34,811 | INFO     | model: linear, x: [1740286701.0, 1740286762.0, 1740286823.0, 1740286884.0, 1740286945.0, 1740287006.0, 1740287068.0, 1740287128.0, 1740287189.0, 1740287251.0, 1740
[2025-02-23 16:38:12] 2025-02-23 21:37:34,811 | INFO     | sum of square deviations: 293640825536.4289
[2025-02-23 16:38:12] 2025-02-23 21:37:34,860 | INFO     | sum of deviations: 869800142057.916
[2025-02-23 16:38:12] 2025-02-23 21:37:34,861 | INFO     | mean x: 1740316622.068228
[2025-02-23 16:38:12] 2025-02-23 21:37:34,861 | INFO     | mean y: 2255571.3594704685
[2025-02-23 16:38:12] 2025-02-23 21:37:34,861 | INFO     | -- intersect: -5152775723.54099
[2025-02-23 16:38:12] 2025-02-23 21:37:34,861 | INFO     | intersect: -5152775723.54099
[2025-02-23 16:38:12] 2025-02-23 21:37:34,862 | INFO     | chi2: 5.709476133202881
[2025-02-23 16:38:12] 2025-02-23 21:37:34,862 | INFO     | current chi2=5.709476133202881 (change=16.62072312361897 %)
[2025-02-23 16:38:12] 2025-02-23 21:37:34,863 | INFO     | left removable region: 20
[2025-02-23 16:38:12] 2025-02-23 21:37:34,864 | INFO     | model: linear, x: [1740287312.0, 1740287372.0, 1740287433.0, 1740287495.0, 1740287555.0, 1740287617.0, 1740287677.0, 1740287738.0, 1740287799.0, 1740287861.0, 1740
[2025-02-23 16:38:12] 2025-02-23 21:37:34,864 | INFO     | sum of square deviations: 279520283475.78143
[2025-02-23 16:38:12] 2025-02-23 21:37:34,886 | INFO     | sum of deviations: 731696793904.0758
[2025-02-23 16:38:12] 2025-02-23 21:37:34,887 | INFO     | mean x: 1740316744.073499
[2025-02-23 16:38:12] 2025-02-23 21:37:34,887 | INFO     | mean y: 2269225.534161491
[2025-02-23 16:38:12] 2025-02-23 21:37:34,887 | INFO     | -- intersect: -4553336422.048439
[2025-02-23 16:38:12] 2025-02-23 21:37:34,887 | INFO     | intersect: -4553336422.048439
[2025-02-23 16:38:12] 2025-02-23 21:37:34,888 | INFO     | chi2: 2.766611931519496
[2025-02-23 16:38:12] 2025-02-23 21:37:34,889 | INFO     | -- intersect: -4553336422.048439
[2025-02-23 16:38:12] 2025-02-23 21:37:34,889 | INFO     | current memory leak: 2.62 B/s (using 966 data points, chi2=2.77)
[2025-02-23 16:38:12] 2025-02-23 21:37:34,890 | INFO     | ..............................
[2025-02-23 16:38:12] 2025-02-23 21:37:34,891 | INFO     | . Timing measurements:
[2025-02-23 16:38:12] 2025-02-23 21:37:34,891 | INFO     | . get job = 1 s
[2025-02-23 16:38:12] 2025-02-23 21:37:34,891 | INFO     | . initial setup = 8 s
[2025-02-23 16:38:12] 2025-02-23 21:37:34,891 | INFO     | . payload setup = 50 s
[2025-02-23 16:38:12] 2025-02-23 21:37:34,891 | INFO     | . stage-in = 0 s
[2025-02-23 16:38:12] 2025-02-23 21:37:34,891 | INFO     | . payload execution = 60535 s
[2025-02-23 16:38:12] 2025-02-23 21:37:34,891 | INFO     | . stage-out = 12 s
[2025-02-23 16:38:12] 2025-02-23 21:37:34,891 | INFO     | . log creation = 2 s
[2025-02-23 16:38:12] 2025-02-23 21:37:34,891 | INFO     | ..............................
[2025-02-23 16:38:12] 2025-02-23 21:37:35,126 | INFO     | 
[2025-02-23 16:38:12] 2025-02-23 21:37:35,127 | INFO     | job summary report
[2025-02-23 16:38:12] 2025-02-23 21:37:35,127 | INFO     | --------------------------------------------------
[2025-02-23 16:38:12] 2025-02-23 21:37:35,127 | INFO     | PanDA job id: 6523440079
[2025-02-23 16:38:12] 2025-02-23 21:37:35,127 | INFO     | task id: 43078919
[2025-02-23 16:38:12] 2025-02-23 21:37:35,127 | INFO     | errors: (none)
[2025-02-23 16:38:12] 2025-02-23 21:37:35,127 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-23 16:38:12] 2025-02-23 21:37:35,127 | INFO     | pilot state: finished 
[2025-02-23 16:38:12] 2025-02-23 21:37:35,127 | INFO     | transexitcode: 0
[2025-02-23 16:38:12] 2025-02-23 21:37:35,128 | INFO     | exeerrorcode: 0
[2025-02-23 16:38:12] 2025-02-23 21:37:35,128 | INFO     | exeerrordiag: 
[2025-02-23 16:38:12] 2025-02-23 21:37:35,128 | INFO     | exitcode: 0
[2025-02-23 16:38:12] 2025-02-23 21:37:35,128 | INFO     | exitmsg: OK
[2025-02-23 16:38:12] 2025-02-23 21:37:35,128 | INFO     | cpuconsumptiontime: 108553 s
[2025-02-23 16:38:12] 2025-02-23 21:37:35,128 | INFO     | nevents: 400
[2025-02-23 16:38:12] 2025-02-23 21:37:35,128 | INFO     | neventsw: 0
[2025-02-23 16:38:12] 2025-02-23 21:37:35,128 | INFO     | pid: 2014021
[2025-02-23 16:38:12] 2025-02-23 21:37:35,128 | INFO     | pgrp: 2014021
[2025-02-23 16:38:12] 2025-02-23 21:37:35,129 | INFO     | corecount: 10
[2025-02-23 16:38:12] 2025-02-23 21:37:35,129 | INFO     | event service: False
[2025-02-23 16:38:12] 2025-02-23 21:37:35,129 | INFO     | sizes: {0: 2383134, 1: 2383190, 2: 2383218, 3: 2383445, 4: 2383445, 15: 2383473, 26: 2383629, 37: 2383657, 44: 2383891, 49: 2383919, 60589: 2434752, 60590: 2435031
[2025-02-23 16:38:12] 2025-02-23 21:37:35,129 | INFO     | --------------------------------------------------
[2025-02-23 16:38:12] 2025-02-23 21:37:35,129 | INFO     | 
[2025-02-23 16:38:12] 2025-02-23 21:37:35,129 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-02-23 16:38:12] 2025-02-23 21:37:35,339 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-23 16:38:12] 2025-02-23 21:37:35,339 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-23 16:38:12] 2025-02-23 21:37:35,339 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-23 16:38:12] 2025-02-23 21:37:35,339 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-23 16:38:12] 2025-02-23 21:37:35,339 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-23 16:38:12] 2025-02-23 21:37:35,339 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-23 16:38:12] 2025-02-23 21:37:35,340 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-23 16:38:12] 2025-02-23 21:37:35,340 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-23 16:38:12] 2025-02-23 21:37:35,340 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-23 16:38:12] 2025-02-23 21:37:35,340 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-23 16:38:12] 2025-02-23 21:37:35,340 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-23 16:38:12] 2025-02-23 21:37:35,340 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-23 16:38:12] 2025-02-23 21:37:35,340 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-23 16:38:12] 2025-02-23 21:37:35,340 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-23 16:38:12] 2025-02-23 21:37:35,340 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-23 16:38:12] 2025-02-23 21:37:35,341 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-23 16:38:12] 2025-02-23 21:37:35,341 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-23 16:38:12] 2025-02-23 21:37:35,341 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-23 16:38:12] 2025-02-23 21:37:35,341 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-23 16:38:12] 2025-02-23 21:37:35,341 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-23 16:38:12] 2025-02-23 21:37:35,341 | INFO     | job 6523440079 has completed (purged errors)
[2025-02-23 16:38:12] 2025-02-23 21:37:35,341 | INFO     | overall cleanup function is called
[2025-02-23 16:38:12] 2025-02-23 21:37:36,354 | INFO     | --- collectZombieJob: --- 10, [2014021]
[2025-02-23 16:38:12] 2025-02-23 21:37:36,354 | INFO     | zombie collector waiting for pid 2014021
[2025-02-23 16:38:12] 2025-02-23 21:37:36,355 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-23 16:38:12] 2025-02-23 21:37:36,355 | INFO     | collected zombie processes
[2025-02-23 16:38:12] 2025-02-23 21:37:36,355 | INFO     | will attempt to kill all subprocesses of pid=2014021
[2025-02-23 16:38:12] 2025-02-23 21:37:38,810 | INFO     | process IDs to be killed: [2014021] (in reverse order)
[2025-02-23 16:38:12] 2025-02-23 21:37:39,206 | WARNING  | found no corresponding commands to process id(s)
[2025-02-23 16:38:12] 2025-02-23 21:37:39,206 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-23 16:38:12] 2025-02-23 21:37:39,238 | INFO     | did not find any defunct processes belonging to 2014021
[2025-02-23 16:38:12] 2025-02-23 21:37:39,270 | INFO     | did not find any defunct processes belonging to 2014021
[2025-02-23 16:38:12] 2025-02-23 21:37:39,271 | INFO     | ready for new job
[2025-02-23 16:38:12] 2025-02-23 21:37:39,271 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-23 16:38:12] 2025-02-23 21:37:39,278 | INFO     | **************************************
[2025-02-23 16:38:12] 2025-02-23 21:37:39,279 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-23 16:38:12] 2025-02-23 21:37:39,279 | INFO     | **************************************
[2025-02-23 16:38:12] 2025-02-23 21:37:39,279 | INFO     | 
[2025-02-23 16:38:12] 2025-02-23 21:37:39,299 | INFO     | architecture information:
[2025-02-23 16:38:12] 2025-02-23 21:37:39,303 | INFO     | executing command: cat /etc/os-release
[2025-02-23 16:38:12] 2025-02-23 21:37:39,398 | INFO     | cat /etc/os-release:
[2025-02-23 16:38:12] NAME="CentOS Linux"
[2025-02-23 16:38:12] VERSION="7 (Core)"
[2025-02-23 16:38:12] ID="centos"
[2025-02-23 16:38:12] ID_LIKE="rhel fedora"
[2025-02-23 16:38:12] VERSION_ID="7"
[2025-02-23 16:38:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-23 16:38:12] ANSI_COLOR="0;31"
[2025-02-23 16:38:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-23 16:38:12] HOME_URL="https://www.centos.org/"
[2025-02-23 16:38:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-23 16:38:12] 
[2025-02-23 16:38:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-23 16:38:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-23 16:38:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-23 16:38:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-23 16:38:12] 
[2025-02-23 16:38:12] 2025-02-23 21:37:39,399 | INFO     | **************************************
[2025-02-23 16:38:12] 2025-02-23 21:37:39,902 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-02-23 16:38:12] 2025-02-23 21:37:39,990 | INFO     | sufficient remaining disk space (75275173888 B)
[2025-02-23 16:38:12] 2025-02-23 21:37:39,991 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-23 16:38:12] 2025-02-23 21:37:39,991 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-23 16:38:12] 2025-02-23 21:37:39,991 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-23 16:38:12] 2025-02-23 21:37:40,021 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-23 16:38:12] 2025-02-23 21:37:40,393 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-02-23 16:38:12] 2025-02-23 21:37:40,393 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-02-23 16:38:12] 2025-02-23 21:37:40,394 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-23 16:38:12] 2025-02-23 21:37:40,394 | INFO     | will abort loop
[2025-02-23 16:38:12] 2025-02-23 21:37:40,394 | INFO     | all job control threads have been joined
[2025-02-23 16:38:12] 2025-02-23 21:37:40,510 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-23 16:38:12] 2025-02-23 21:37:40,790 | INFO     | all payload control threads have been joined
[2025-02-23 16:38:12] 2025-02-23 21:37:40,790 | INFO     | all data control threads have been joined
[2025-02-23 16:38:12] 2025-02-23 21:37:41,018 | INFO     | [job] retrieve thread has finished
[2025-02-23 16:38:12] 2025-02-23 21:37:41,027 | INFO     | [job] queue monitor thread has finished
[2025-02-23 16:38:12] 2025-02-23 21:37:41,214 | INFO     | [payload] failed_post thread has finished
[2025-02-23 16:38:12] 2025-02-23 21:37:41,403 | INFO     | [job] job monitor thread has finished
[2025-02-23 16:38:12] 2025-02-23 21:37:41,404 | INFO     | [job] control thread has finished
[2025-02-23 16:38:12] 2025-02-23 21:37:41,756 | INFO     | [job] create_data_payload thread has finished
[2025-02-23 16:38:12] 2025-02-23 21:37:41,760 | INFO     | [payload] validate_pre thread has finished
[2025-02-23 16:38:12] 2025-02-23 21:37:41,769 | INFO     | [payload] execute_payloads thread has finished
[2025-02-23 16:38:12] 2025-02-23 21:37:41,876 | INFO     | [data] control thread has finished
[2025-02-23 16:38:12] 2025-02-23 21:37:41,883 | INFO     | [payload] control thread has finished
[2025-02-23 16:38:12] 2025-02-23 21:37:41,903 | INFO     | [data] copytool_in thread has finished
[2025-02-23 16:38:12] 2025-02-23 21:37:41,904 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-23 16:38:12] 2025-02-23 21:37:41,908 | INFO     | [job] validate thread has finished
[2025-02-23 16:38:12] 2025-02-23 21:37:42,029 | INFO     | [data] copytool_out thread has finished
[2025-02-23 16:38:12] 2025-02-23 21:37:42,115 | INFO     | [payload] validate_post thread has finished
[2025-02-23 16:38:12] 2025-02-23 21:37:44,664 | INFO     | [data] queue_monitor thread has finished
[2025-02-23 16:38:12] 2025-02-23 21:37:45,140 | INFO     | PID=1977663 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-02-23 16:38:12] 2025-02-23 21:37:45,140 | INFO     | .. there are 40 such processes running
[2025-02-23 16:38:12] 2025-02-23 21:37:45,140 | INFO     | found 0 job(s) in 20 queues
[2025-02-23 16:38:12] 2025-02-23 21:37:45,141 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-23 16:38:12] 2025-02-23 21:37:45,141 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-23 16:38:12] 2025-02-23 21:37:45,455 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140232843433792)>', '<ExcThread(monitor, started 140231604950784)>']
[2025-02-23 16:38:12] 2025-02-23 21:37:46,163 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-23 16:38:12] 2025-02-23 21:37:46,163 | INFO     | [monitor] control thread has ended
[2025-02-23 16:38:12] 2025-02-23 21:37:50,480 | INFO     | all workflow threads have been joined
[2025-02-23 16:38:12] 2025-02-23 21:37:50,480 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-23 16:38:12] 2025-02-23 21:37:50,510 | INFO     | traces error code: 0
[2025-02-23 16:38:12] 2025-02-23 21:37:50,511 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-23 16:38:12] 2025-02-23 21:37:50,998 [wrapper] ==== pilot stdout END ====
[2025-02-23 16:38:12] 2025-02-23 21:37:51,045 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-23 16:38:12] 2025-02-23 21:37:51,094 [wrapper] pilotpid: 1977663
[2025-02-23 16:38:12] 2025-02-23 21:37:51,134 [wrapper] Pilot exit status: 0
[2025-02-23 16:38:12] 2025-02-23 21:37:51,415 [wrapper] pandaids: 6523440079
[2025-02-23 16:38:12] 2025-02-23 21:37:51,655 [wrapper] cleanup supervisor_pilot 3725709 1977664
[2025-02-23 16:38:12] 2025-02-23 21:37:51,671 [wrapper] Test setup, not cleaning
[2025-02-23 16:38:12] 2025-02-23 21:37:51,756 [wrapper] apfmon messages muted
[2025-02-23 16:38:12] 2025-02-23 21:37:51,830 [wrapper] ==== wrapper stdout END ====
[2025-02-23 16:38:12] 2025-02-23 21:37:51,913 [wrapper] ==== wrapper stderr END ====
[2025-02-23 16:38:12]  *** Error codes and diagnostics ***
[2025-02-23 16:38:12]     "exeErrorCode": 0,
[2025-02-23 16:38:12]     "exeErrorDiag": "",
[2025-02-23 16:38:12]     "pilotErrorCode": 0,
[2025-02-23 16:38:12]     "pilotErrorDiag": "",
[2025-02-23 16:38:12]  *** Listing of results directory ***
[2025-02-23 16:38:12] total 669880
[2025-02-23 16:38:12] -rw-r--r--. 1 boincer umatlas    491065 Feb 22 17:40 pilot3.tar.gz
[2025-02-23 16:38:12] -rwx------. 1 boincer umatlas     35865 Feb 22 17:42 runpilot2-wrapper.sh
[2025-02-23 16:38:12] -rw-r--r--. 1 boincer umatlas      5118 Feb 22 17:42 queuedata.json
[2025-02-23 16:38:12] -rw-r--r--. 1 boincer umatlas       100 Feb 22 23:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-23 16:38:12] -rwxr-xr-x. 1 boincer umatlas      7986 Feb 22 23:43 run_atlas
[2025-02-23 16:38:12] -rw-r--r--. 1 boincer umatlas       105 Feb 22 23:43 job.xml
[2025-02-23 16:38:12] -rw-r--r--. 2 boincer umatlas 341831125 Feb 22 23:43 EVNT.43078917._002581.pool.root.1
[2025-02-23 16:38:12] -rw-r--r--. 2 boincer umatlas     17569 Feb 22 23:43 start_atlas.sh
[2025-02-23 16:38:12] drwxrwx--x. 2 boincer umatlas      4096 Feb 22 23:43 shared
[2025-02-23 16:38:12] -rw-r--r--. 2 boincer umatlas    503559 Feb 22 23:43 input.tar.gz
[2025-02-23 16:38:12] -rw-r--r--. 1 boincer umatlas         0 Feb 22 23:43 boinc_lockfile
[2025-02-23 16:38:12] -rw-r--r--. 1 boincer umatlas      2546 Feb 22 23:43 pandaJob.out
[2025-02-23 16:38:12] -rw-------. 1 boincer umatlas       467 Feb 22 23:43 setup.sh.local
[2025-02-23 16:38:12] -rw-------. 1 boincer umatlas    987744 Feb 22 23:45 agis_schedconf.cvmfs.json
[2025-02-23 16:38:12] drwx------. 4 boincer umatlas      4096 Feb 22 23:45 pilot3
[2025-02-23 16:38:12] -rw-r--r--. 1 boincer umatlas      6675 Feb 23 16:29 init_data.xml
[2025-02-23 16:38:12] -rw-------. 1 boincer umatlas 324715022 Feb 23 16:33 HITS.43078919._089484.pool.root.1
[2025-02-23 16:38:12] -rw-r--r--. 1 boincer umatlas       533 Feb 23 16:34 boinc_task_state.xml
[2025-02-23 16:38:12] -rw-------. 1 boincer umatlas      1063 Feb 23 16:36 memory_monitor_summary.json
[2025-02-23 16:38:12] -rw-------. 1 boincer umatlas   1582569 Feb 23 16:36 agis_ddmendpoints.agis.ALL.json
[2025-02-23 16:38:12] -rw-------. 1 boincer umatlas    995966 Feb 23 16:36 log.43078919._089484.job.log.tgz.1
[2025-02-23 16:38:12] -rw-------. 1 boincer umatlas        95 Feb 23 16:36 pilot_heartbeat.json
[2025-02-23 16:38:12] -rw-------. 1 boincer umatlas      7780 Feb 23 16:37 heartbeat.json
[2025-02-23 16:38:12] -rw-------. 1 boincer umatlas      4796 Feb 23 16:37 pilotlog.txt
[2025-02-23 16:38:12] -rw-------. 1 boincer umatlas   6805313 Feb 23 16:37 log.43078919._089484.job.log.1
[2025-02-23 16:38:12] -rw-------. 1 boincer umatlas       357 Feb 23 16:37 output.list
[2025-02-23 16:38:12] -rw-r--r--. 1 boincer umatlas       620 Feb 23 16:37 runtime_log
[2025-02-23 16:38:12] -rw-------. 1 boincer umatlas   7823360 Feb 23 16:37 result.tar.gz
[2025-02-23 16:38:12] -rw-r--r--. 1 boincer umatlas     11406 Feb 23 16:37 runtime_log.err
[2025-02-23 16:38:12] -rw-------. 1 boincer umatlas       661 Feb 23 16:37 9LSLDmtND66nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmlguKDmO2ZDOn.diag
[2025-02-23 16:38:12] -rw-r--r--. 1 boincer umatlas      8192 Feb 23 16:38 boinc_mmap_file
[2025-02-23 16:38:12] -rw-r--r--. 1 boincer umatlas        29 Feb 23 16:38 wrapper_checkpoint.txt
[2025-02-23 16:38:12] -rw-r--r--. 1 boincer umatlas     21791 Feb 23 16:38 stderr.txt
[2025-02-23 16:38:13] HITS file was successfully produced:
[2025-02-23 16:38:13] -rw-------. 1 boincer umatlas 324715022 Feb 23 16:33 shared/HITS.pool.root.1
[2025-02-23 16:38:13]  *** Contents of shared directory: ***
[2025-02-23 16:38:13] total 659084
[2025-02-23 16:38:13] -rw-r--r--. 2 boincer umatlas 341831125 Feb 22 23:43 ATLAS.root_0
[2025-02-23 16:38:13] -rw-r--r--. 2 boincer umatlas     17569 Feb 22 23:43 start_atlas.sh
[2025-02-23 16:38:13] -rw-r--r--. 2 boincer umatlas    503559 Feb 22 23:43 input.tar.gz
[2025-02-23 16:38:13] -rw-------. 1 boincer umatlas 324715022 Feb 23 16:33 HITS.pool.root.1
[2025-02-23 16:38:13] -rw-------. 1 boincer umatlas   7823360 Feb 23 16:37 result.tar.gz
16:38:14 (1969096): run_atlas exited; CPU time 108755.535482
16:38:14 (1969096): called boinc_finish(0)

</stderr_txt>
]]>

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