Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-24 18:29:02 (15728): Detected: vboxwrapper 26206
2025-02-24 18:29:02 (15728): Detected: BOINC client v8.0.2
2025-02-24 18:29:02 (15728): Detected: VirtualBox VboxManage Interface (Version: 6.1.12)
2025-02-24 18:29:03 (15728): Successfully copied 'init_data.xml' to the shared directory.
2025-02-24 18:29:03 (15728): Create VM. (boinc_57d0278da31d05a1, slot#0)
2025-02-24 18:29:04 (15728): Setting Memory Size for VM. (4200MB)
2025-02-24 18:29:04 (15728): Setting CPU Count for VM. (2)
2025-02-24 18:29:04 (15728): Setting Chipset Options for VM.
2025-02-24 18:29:04 (15728): Setting Graphics Controller Options for VM.
2025-02-24 18:29:05 (15728): Setting Boot Options for VM.
2025-02-24 18:29:05 (15728): Setting Network Configuration for NAT.
2025-02-24 18:29:05 (15728): Enabling VM Network Access.
2025-02-24 18:29:05 (15728): Disabling USB Support for VM.
2025-02-24 18:29:06 (15728): Disabling COM Port Support for VM.
2025-02-24 18:29:06 (15728): Disabling LPT Port Support for VM.
2025-02-24 18:29:06 (15728): Disabling Audio Support for VM.
2025-02-24 18:29:06 (15728): Disabling Clipboard Support for VM.
2025-02-24 18:29:07 (15728): Disabling Drag and Drop Support for VM.
2025-02-24 18:29:07 (15728): Adding storage controller(s) to VM.
2025-02-24 18:29:07 (15728): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-24 18:29:08 (15728): Adding VirtualBox Guest Additions to VM.
2025-02-24 18:29:08 (15728): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-24 18:29:08 (15728): forwarding host port 53387 to guest port 80
2025-02-24 18:29:08 (15728): Enabling remote desktop for VM.
2025-02-24 18:29:09 (15728): Required extension pack not installed, remote desktop not enabled.
2025-02-24 18:29:09 (15728): Enabling shared directory for VM.
2025-02-24 18:29:09 (15728): Starting VM using VBoxManage interface. (boinc_57d0278da31d05a1, slot#0)
2025-02-24 18:29:13 (15728): Successfully started VM. (PID = '4792')
2025-02-24 18:29:13 (15728): Reporting VM Process ID to BOINC.
2025-02-24 18:29:13 (15728): Guest Log: BIOS: VirtualBox 6.1.12
2025-02-24 18:29:13 (15728): Guest Log: CPUID EDX: 0x178bfbff
2025-02-24 18:29:13 (15728): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-24 18:29:13 (15728): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-24 18:29:13 (15728): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-24 18:29:13 (15728): Detected: Web Application Enabled (http://localhost:53387)
2025-02-24 18:29:13 (15728): Preference change detected
2025-02-24 18:29:13 (15728): Setting CPU throttle for VM. (60%)
2025-02-24 18:29:13 (15728): Setting checkpoint interval to 18000 seconds. (Higher value of (Preference: 18000 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-24 18:29:15 (15728): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-24 18:29:15 (15728): Guest Log: BIOS: Booting from Hard Disk...
2025-02-24 18:29:18 (15728): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-24 18:29:18 (15728): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-24 18:29:18 (15728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-24 18:29:18 (15728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-24 18:29:18 (15728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-24 18:29:18 (15728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-24 18:29:18 (15728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-24 18:29:18 (15728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-24 18:29:18 (15728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-24 18:29:18 (15728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-24 18:29:18 (15728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-24 18:29:18 (15728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-24 18:29:18 (15728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-24 18:29:18 (15728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-24 18:29:18 (15728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-24 18:29:18 (15728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-24 18:29:18 (15728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-24 18:29:18 (15728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-24 18:29:18 (15728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-24 18:29:18 (15728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-24 18:29:18 (15728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-24 18:29:18 (15728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-24 18:29:18 (15728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-24 18:29:18 (15728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-24 18:29:18 (15728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-24 18:29:18 (15728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-24 18:29:18 (15728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-24 18:29:18 (15728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-24 18:29:18 (15728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-24 18:29:18 (15728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-24 18:29:18 (15728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-24 18:29:18 (15728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-24 18:29:24 (15728): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-24 18:29:24 (15728): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-24 18:29:33 (15728): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-24 18:29:33 (15728): Guest Log: 00:00:00.000133 main     Log opened 2025-02-24T18:29:29.949147000Z
2025-02-24 18:29:33 (15728): Guest Log: 00:00:00.000205 main     OS Product: Linux
2025-02-24 18:29:33 (15728): Guest Log: 00:00:00.000229 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-24 18:29:33 (15728): Guest Log: 00:00:00.000248 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-24 18:29:33 (15728): Guest Log: 00:00:00.000268 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-24 18:29:33 (15728): Guest Log: 00:00:00.000268 main     Process ID: 1263
2025-02-24 18:29:33 (15728): Guest Log: 00:00:00.000269 main     Package type: LINUX_64BITS_GENERIC
2025-02-24 18:29:33 (15728): Guest Log: 00:00:00.001161 main     5.2.32 r132073 started. Verbose level = 0
2025-02-24 18:29:33 (15728): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-24 18:29:33 (15728): Guest Log: [INFO] Mounting shared directory
2025-02-24 18:29:33 (15728): Guest Log: [INFO] Checking for init_data.xml
2025-02-24 18:29:39 (15728): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-24 18:29:39 (15728): Guest Log: [INFO] Detected branch: prod
2025-02-24 18:29:39 (15728): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-24 18:29:39 (15728): Guest Log: Copying input files
2025-02-24 18:29:42 (15728): Guest Log: Copied input files into RunAtlas.
2025-02-24 18:29:42 (15728): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-24 18:29:42 (15728): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-24 18:29:42 (15728): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-24 18:29:42 (15728): Guest Log: Further information can be found at the LHC@home message board.
2025-02-24 18:29:42 (15728): Guest Log: 00:00:10.068023 timesync vgsvcTimeSyncWorker: Radical guest time change: -46 787 719 317 000ns (GuestNow=1 740 374 982 233 344 000 ns GuestLast=1 740 421 769 952 661 000 ns fSetTimeLastLoop=true )
2025-02-24 18:29:51 (15728): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-24 18:29:51 (15728): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-24 18:29:51 (15728): Guest Log: 2.6.3.0 1538 0 30292 143000 4 1 3119916 4096000 0 65024 0 0 n/a 1169 648 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-02-24 18:29:53 (15728): Guest Log: copied the webapp to /var/www
2025-02-24 18:29:53 (15728): Guest Log: ATHENA_PROC_NUMBER=2
2025-02-24 18:29:53 (15728): Guest Log: ATHENA_CORE_NUMBER=2
2025-02-24 18:29:53 (15728): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-24 18:29:53 (15728): Guest Log:  *** Starting ATLAS job. (PandaID=6523022865 taskID=43205075) ***
2025-02-24 20:09:16 (15728): Status Report: Elapsed Time: '6000.000000'
2025-02-24 20:09:16 (15728): Status Report: CPU Time: '5955.234375'
2025-02-24 21:49:20 (15728): Status Report: Elapsed Time: '12000.000000'
2025-02-24 21:49:20 (15728): Status Report: CPU Time: '13202.312500'
2025-02-24 23:29:23 (15728): Status Report: Elapsed Time: '18000.000000'
2025-02-24 23:29:23 (15728): Status Report: CPU Time: '20444.250000'
2025-02-25 01:09:27 (15728): Status Report: Elapsed Time: '24000.000000'
2025-02-25 01:09:27 (15728): Status Report: CPU Time: '27682.609375'
2025-02-25 02:49:31 (15728): Status Report: Elapsed Time: '30000.000000'
2025-02-25 02:49:31 (15728): Status Report: CPU Time: '34923.203125'
2025-02-25 04:29:37 (15728): Status Report: Elapsed Time: '36000.000000'
2025-02-25 04:29:37 (15728): Status Report: CPU Time: '42166.859375'
2025-02-25 06:08:34 (15728): Guest Log:  *** Job finished ***
2025-02-25 06:08:34 (15728): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-25 06:08:34 (15728): Guest Log: 2025-02-24 17:08:26,637 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-02-25 06:08:34 (15728): Guest Log: 2025-02-24 17:08:27,641 | INFO     | [job] queue monitor thread has finished
2025-02-25 06:08:34 (15728): Guest Log: 2025-02-24 17:08:28,157 | INFO     | [data] queue_monitor thread has finished
2025-02-25 06:08:34 (15728): Guest Log: 2025-02-24 17:08:28,872 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139972766246720)>', '<ExcThread(monitor, started 139972103366400)>']
2025-02-25 06:08:34 (15728): Guest Log: 2025-02-24 17:08:29,641 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-25 06:08:34 (15728): Guest Log: 2025-02-24 17:08:29,642 | INFO     | [monitor] control thread has ended
2025-02-25 06:08:34 (15728): Guest Log: 2025-02-24 17:08:33,878 | INFO     | all workflow threads have been joined
2025-02-25 06:08:34 (15728): Guest Log: 2025-02-24 17:08:33,878 | INFO     | end of generic workflow (traces error code: 0)
2025-02-25 06:08:34 (15728): Guest Log: 2025-02-24 17:08:33,878 | INFO     | traces error code: 0
2025-02-25 06:08:34 (15728): Guest Log: 2025-02-24 17:08:33,878 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-25 06:08:34 (15728): Guest Log: 2025-02-24 17:08:33,983 [wrapper] ==== pilot stdout END ====
2025-02-25 06:08:34 (15728): Guest Log: 2025-02-24 17:08:33,986 [wrapper] ==== wrapper stdout RESUME ====
2025-02-25 06:08:34 (15728): Guest Log: 2025-02-24 17:08:33,989 [wrapper] pilotpid: 5840
2025-02-25 06:08:34 (15728): Guest Log: 2025-02-24 17:08:33,992 [wrapper] Pilot exit status: 0
2025-02-25 06:08:34 (15728): Guest Log: 2025-02-24 17:08:34,034 [wrapper] pandaids: 6523022865
2025-02-25 06:08:34 (15728): Guest Log: 2025-02-24 17:08:34,065 [wrapper] cleanup supervisor_pilot 20341 5841
2025-02-25 06:08:34 (15728): Guest Log: 2025-02-24 17:08:34,079 [wrapper] Test setup, not cleaning
2025-02-25 06:08:34 (15728): Guest Log: 2025-02-24 17:08:34,093 [wrapper] apfmon messages muted
2025-02-25 06:08:34 (15728): Guest Log: 2025-02-24 17:08:34,097 [wrapper] ==== wrapper stdout END ====
2025-02-25 06:08:34 (15728): Guest Log: 2025-02-24 17:08:34,100 [wrapper] ==== wrapper stderr END ====
2025-02-25 06:08:34 (15728): Guest Log:  *** Error codes and diagnostics ***
2025-02-25 06:08:34 (15728): Guest Log:     "exeErrorCode": 0,
2025-02-25 06:08:34 (15728): Guest Log:     "exeErrorDiag": "",
2025-02-25 06:08:34 (15728): Guest Log:     "pilotErrorCode": 0,
2025-02-25 06:08:34 (15728): Guest Log:     "pilotErrorDiag": "",
2025-02-25 06:08:34 (15728): Guest Log:  *** Listing of results directory ***
2025-02-25 06:08:34 (15728): Guest Log: total 333268
2025-02-25 06:08:34 (15728): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb 22 15:20 pilot3.tar.gz
2025-02-25 06:08:34 (15728): Guest Log: -rw-r--r--. 1 atlas atlas      5118 Feb 22 15:23 queuedata.json
2025-02-25 06:08:34 (15728): Guest Log: -rwx------. 1 atlas atlas     35865 Feb 22 15:25 runpilot2-wrapper.sh
2025-02-25 06:08:34 (15728): Guest Log: -rwxr-xr-x. 1 atlas atlas      9474 Feb 24 05:29 init_data.xml
2025-02-25 06:08:34 (15728): Guest Log: -rwxr-xr-x. 1 atlas atlas    503557 Feb 24 05:29 input.tar.gz
2025-02-25 06:08:34 (15728): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb 24 05:29 start_atlas.sh
2025-02-25 06:08:34 (15728): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 24 05:29 EVNT.43092757._001200.pool.root.1 -> /data/./ATLAS.root_0
2025-02-25 06:08:34 (15728): Guest Log: -rw-r--r--. 1 atlas atlas      2555 Feb 24 05:29 pandaJob.out
2025-02-25 06:08:34 (15728): Guest Log: -rw-------. 1 atlas atlas       424 Feb 24 05:29 setup.sh.local
2025-02-25 06:08:34 (15728): Guest Log: -rw-------. 1 atlas atlas    987712 Feb 24 05:30 agis_schedconf.cvmfs.json
2025-02-25 06:08:34 (15728): Guest Log: drwx------. 4 atlas atlas      4096 Feb 24 05:31 pilot3
2025-02-25 06:08:34 (15728): Guest Log: -rw-------. 1 atlas atlas 326013525 Feb 24 17:07 HITS.43205075._059017.pool.root.1
2025-02-25 06:08:34 (15728): Guest Log: -rw-------. 1 atlas atlas        95 Feb 24 17:07 pilot_heartbeat.json
2025-02-25 06:08:34 (15728): Guest Log: -rw-------. 1 atlas atlas      1026 Feb 24 17:08 memory_monitor_summary.json
2025-02-25 06:08:34 (15728): Guest Log: -rw-------. 1 atlas atlas   1582569 Feb 24 17:08 agis_ddmendpoints.agis.ALL.json
2025-02-25 06:08:34 (15728): Guest Log: -rw-------. 1 atlas atlas    597716 Feb 24 17:08 log.43205075._059017.job.log.tgz.1
2025-02-25 06:08:34 (15728): Guest Log: -rw-------. 1 atlas atlas      7732 Feb 24 17:08 heartbeat.json
2025-02-25 06:08:34 (15728): Guest Log: -rw-------. 1 atlas atlas      4275 Feb 24 17:08 pilotlog.txt
2025-02-25 06:08:34 (15728): Guest Log: -rw-------. 1 atlas atlas   5157588 Feb 24 17:08 log.43205075._059017.job.log.1
2025-02-25 06:08:34 (15728): Guest Log: -rw-------. 1 atlas atlas       357 Feb 24 17:08 output.list
2025-02-25 06:08:34 (15728): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb 24 17:08 runtime_log
2025-02-25 06:08:34 (15728): Guest Log: -rw-------. 1 atlas atlas   5775360 Feb 24 17:08 result.tar.gz
2025-02-25 06:08:34 (15728): Guest Log: -rw-r--r--. 1 atlas atlas     10936 Feb 24 17:08 runtime_log.err
2025-02-25 06:08:34 (15728): Guest Log: -rw-------. 1 atlas atlas       657 Feb 24 17:08 hQuLDmvY656nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmNDuKDmtVc6Vo.diag
2025-02-25 06:08:34 (15728): Guest Log: Looking for outputfile HITS.43205075._059017.pool.root.1
2025-02-25 06:08:34 (15728): Guest Log: HITS file was successfully produced
2025-02-25 06:08:34 (15728): Guest Log: -rw-------. 1 atlas atlas 326013525 Feb 24 17:07 /home/atlas/RunAtlas/HITS.43205075._059017.pool.root.1
2025-02-25 06:08:36 (15728): Guest Log: Successfully finished the ATLAS job!
2025-02-25 06:08:36 (15728): Guest Log: Copying the results back to the shared directory!
2025-02-25 06:08:36 (15728): Guest Log:  *** Contents of shared directory: ***
2025-02-25 06:08:36 (15728): Guest Log: total 661200
2025-02-25 06:08:36 (15728): Guest Log: -rwxrwxrwx. 1 root root 344736729 Feb 24 05:29 ATLAS.root_0
2025-02-25 06:08:36 (15728): Guest Log: -rwxrwxrwx. 1 root root 326013525 Feb 24 17:08 HITS.pool.root.1
2025-02-25 06:08:36 (15728): Guest Log: -rwxrwxrwx. 1 root root      9474 Feb 24 05:29 init_data.xml
2025-02-25 06:08:36 (15728): Guest Log: -rwxrwxrwx. 1 root root    503557 Feb 23 02:48 input.tar.gz
2025-02-25 06:08:36 (15728): Guest Log: -rwxrwxrwx. 1 root root   5775360 Feb 24 17:08 result.tar.gz
2025-02-25 06:08:36 (15728): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 23 02:48 start_atlas.sh
2025-02-25 06:08:36 (15728): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-25 06:08:36 (15728): VM Completion File Detected.
2025-02-25 06:08:36 (15728): Powering off VM.
2025-02-25 06:08:37 (15728): Successfully stopped VM.
2025-02-25 06:08:37 (15728): Deregistering VM. (boinc_57d0278da31d05a1, slot#0)
2025-02-25 06:08:37 (15728): Removing network bandwidth throttle group from VM.
2025-02-25 06:08:37 (15728): Removing VM from VirtualBox.
06:08:42 (15728): called boinc_finish(0)

</stderr_txt>
]]>

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