Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-22 21:35:00 (11628): Detected: vboxwrapper 26206
2025-02-22 21:35:00 (11628): Detected: BOINC client v8.0.4
2025-02-22 21:35:00 (11628): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-02-22 21:35:00 (11628): Successfully copied 'init_data.xml' to the shared directory.
2025-02-22 21:35:01 (11628): Create VM. (boinc_9d42cde8dd258761, slot#0)
2025-02-22 21:35:01 (11628): Setting Memory Size for VM. (4400MB)
2025-02-22 21:35:02 (11628): Setting CPU Count for VM. (4)
2025-02-22 21:35:02 (11628): Setting Chipset Options for VM.
2025-02-22 21:35:02 (11628): Setting Graphics Controller Options for VM.
2025-02-22 21:35:02 (11628): Setting Boot Options for VM.
2025-02-22 21:35:03 (11628): Setting Network Configuration for NAT.
2025-02-22 21:35:03 (11628): Enabling VM Network Access.
2025-02-22 21:35:03 (11628): Disabling USB Support for VM.
2025-02-22 21:35:03 (11628): Disabling COM Port Support for VM.
2025-02-22 21:35:04 (11628): Disabling LPT Port Support for VM.
2025-02-22 21:35:04 (11628): Disabling Audio Support for VM.
2025-02-22 21:35:04 (11628): Disabling Clipboard Support for VM.
2025-02-22 21:35:04 (11628): Disabling Drag and Drop Support for VM.
2025-02-22 21:35:05 (11628): Adding storage controller(s) to VM.
2025-02-22 21:35:05 (11628): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-22 21:35:05 (11628): Adding VirtualBox Guest Additions to VM.
2025-02-22 21:35:06 (11628): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-22 21:35:06 (11628): forwarding host port 50013 to guest port 80
2025-02-22 21:35:06 (11628): Enabling remote desktop for VM.
2025-02-22 21:35:06 (11628): Required extension pack not installed, remote desktop not enabled.
2025-02-22 21:35:06 (11628): Enabling shared directory for VM.
2025-02-22 21:35:07 (11628): Starting VM using VBoxManage interface. (boinc_9d42cde8dd258761, slot#0)
2025-02-22 21:35:11 (11628): Successfully started VM. (PID = '20992')
2025-02-22 21:35:11 (11628): Reporting VM Process ID to BOINC.
2025-02-22 21:35:11 (11628): Guest Log: BIOS: VirtualBox 7.1.4
2025-02-22 21:35:11 (11628): Guest Log: CPUID EDX: 0x178bfbff
2025-02-22 21:35:11 (11628): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-22 21:35:11 (11628): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-22 21:35:11 (11628): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-22 21:35:11 (11628): Detected: Web Application Enabled (http://localhost:50013)
2025-02-22 21:35:11 (11628): Preference change detected
2025-02-22 21:35:11 (11628): Setting CPU throttle for VM. (100%)
2025-02-22 21:35:11 (11628): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-22 21:35:13 (11628): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-22 21:35:13 (11628): Guest Log: BIOS: Booting from Hard Disk...
2025-02-22 21:35:15 (11628): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-22 21:35:15 (11628): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-22 21:35:15 (11628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-22 21:35:15 (11628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-22 21:35:15 (11628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-22 21:35:15 (11628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-22 21:35:15 (11628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-22 21:35:15 (11628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-22 21:35:15 (11628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-22 21:35:15 (11628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-22 21:35:15 (11628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-22 21:35:15 (11628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-22 21:35:15 (11628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-22 21:35:15 (11628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-22 21:35:15 (11628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-22 21:35:15 (11628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-22 21:35:15 (11628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-22 21:35:15 (11628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-22 21:35:15 (11628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-22 21:35:15 (11628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-22 21:35:15 (11628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-22 21:35:15 (11628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-22 21:35:15 (11628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-22 21:35:15 (11628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-22 21:35:15 (11628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-22 21:35:15 (11628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-22 21:35:15 (11628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-22 21:35:15 (11628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-22 21:35:15 (11628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-22 21:35:15 (11628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-22 21:35:15 (11628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-22 21:35:15 (11628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-22 21:35:22 (11628): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-22 21:35:22 (11628): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-22 21:35:29 (11628): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-22 21:35:29 (11628): Guest Log: 00:00:00.000122 main     Log opened 2025-02-22T21:35:27.838930000Z
2025-02-22 21:35:29 (11628): Guest Log: 00:00:00.000201 main     OS Product: Linux
2025-02-22 21:35:29 (11628): Guest Log: 00:00:00.000251 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-22 21:35:29 (11628): Guest Log: 00:00:00.000274 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-22 21:35:29 (11628): Guest Log: 00:00:00.000296 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-22 21:35:29 (11628): Guest Log: 00:00:00.000297 main     Process ID: 1308
2025-02-22 21:35:29 (11628): Guest Log: 00:00:00.000297 main     Package type: LINUX_64BITS_GENERIC
2025-02-22 21:35:29 (11628): Guest Log: 00:00:00.002726 main     5.2.32 r132073 started. Verbose level = 0
2025-02-22 21:35:29 (11628): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-22 21:35:29 (11628): Guest Log: [INFO] Mounting shared directory
2025-02-22 21:35:29 (11628): Guest Log: [INFO] Checking for init_data.xml
2025-02-22 21:35:32 (11628): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-22 21:35:32 (11628): Guest Log: [INFO] Detected branch: prod
2025-02-22 21:35:33 (11628): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-22 21:35:33 (11628): Guest Log: Copying input files
2025-02-22 21:35:34 (11628): Guest Log: Copied input files into RunAtlas.
2025-02-22 21:35:34 (11628): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-22 21:35:34 (11628): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-22 21:35:34 (11628): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-22 21:35:34 (11628): Guest Log: Further information can be found at the LHC@home message board.
2025-02-22 21:35:39 (11628): Guest Log: 00:00:10.036857 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 020 350 000ns (GuestNow=1 740 278 138 875 989 000 ns GuestLast=1 740 260 127 855 639 000 ns fSetTimeLastLoop=true )
2025-02-22 21:35:43 (11628): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-22 21:35:43 (11628): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-22 21:35:43 (11628): Guest Log: 2.6.3.0 1586 0 29992 142959 4 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-02-22 21:35:44 (11628): Guest Log: copied the webapp to /var/www
2025-02-22 21:35:44 (11628): Guest Log: ATHENA_PROC_NUMBER=4
2025-02-22 21:35:44 (11628): Guest Log: ATHENA_CORE_NUMBER=4
2025-02-22 21:35:44 (11628): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-22 21:35:44 (11628): Guest Log:  *** Starting ATLAS job. (PandaID=6523020719 taskID=43078919) ***
2025-02-22 22:00:07 (11628): Guest Log:  *** Job finished ***
2025-02-22 22:00:07 (11628): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-22 22:00:07 (11628): Guest Log: 2025-02-23 02:59:53,502 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-02-22 22:00:07 (11628): Guest Log: 2025-02-23 02:59:54,355 | INFO     | [job] queue monitor thread has finished
2025-02-22 22:00:07 (11628): Guest Log: 2025-02-23 02:59:57,520 | INFO     | [data] queue_monitor thread has finished
2025-02-22 22:00:07 (11628): Guest Log: 2025-02-23 02:59:59,170 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140338677180224)>', '<ExcThread(monitor, started 140337586632448)>']
2025-02-22 22:00:07 (11628): Guest Log: 2025-02-23 02:59:59,223 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-22 22:00:07 (11628): Guest Log: 2025-02-23 02:59:59,223 | INFO     | [monitor] control thread has ended
2025-02-22 22:00:07 (11628): Guest Log: 2025-02-23 03:00:04,174 | INFO     | all workflow threads have been joined
2025-02-22 22:00:07 (11628): Guest Log: 2025-02-23 03:00:04,174 | INFO     | end of generic workflow (traces error code: 0)
2025-02-22 22:00:07 (11628): Guest Log: 2025-02-23 03:00:04,174 | INFO     | traces error code: 0
2025-02-22 22:00:07 (11628): Guest Log: 2025-02-23 03:00:04,175 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-22 22:00:07 (11628): Guest Log: 2025-02-23 03:00:04,270 [wrapper] ==== pilot stdout END ====
2025-02-22 22:00:07 (11628): Guest Log: 2025-02-23 03:00:04,285 [wrapper] ==== wrapper stdout RESUME ====
2025-02-22 22:00:07 (11628): Guest Log: 2025-02-23 03:00:04,305 [wrapper] pilotpid: 5913
2025-02-22 22:00:07 (11628): Guest Log: 2025-02-23 03:00:04,320 [wrapper] Pilot exit status: 0
2025-02-22 22:00:07 (11628): Guest Log: 2025-02-23 03:00:04,464 [wrapper] pandaids: 6523020719
2025-02-22 22:00:07 (11628): Guest Log: 2025-02-23 03:00:04,586 [wrapper] cleanup supervisor_pilot 19204 5914
2025-02-22 22:00:07 (11628): Guest Log: 2025-02-23 03:00:04,606 [wrapper] Test setup, not cleaning
2025-02-22 22:00:07 (11628): Guest Log: 2025-02-23 03:00:04,650 [wrapper] apfmon messages muted
2025-02-22 22:00:07 (11628): Guest Log: 2025-02-23 03:00:04,682 [wrapper] ==== wrapper stdout END ====
2025-02-22 22:00:07 (11628): Guest Log: 2025-02-23 03:00:04,711 [wrapper] ==== wrapper stderr END ====
2025-02-22 22:00:07 (11628): Guest Log:  *** Error codes and diagnostics ***
2025-02-22 22:00:07 (11628): Guest Log:     "exeErrorCode": 65,
2025-02-22 22:00:07 (11628): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"GeoModelSvc                                                      FATAL in sysInitialize(): standard std::exception is caught\"",
2025-02-22 22:00:07 (11628): Guest Log:     "pilotErrorCode": 1305,
2025-02-22 22:00:07 (11628): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute 2025-02-23 02:59:15,981 CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"GeoModelSvc                                                      FATAL in sysInitia",
2025-02-22 22:00:07 (11628): Guest Log:  *** Listing of results directory ***
2025-02-22 22:00:07 (11628): Guest Log: total 4112
2025-02-22 22:00:07 (11628): Guest Log: -rw-r--r--. 1 atlas atlas  491065 Feb 22 13:36 pilot3.tar.gz
2025-02-22 22:00:07 (11628): Guest Log: -rw-r--r--. 1 atlas atlas    5118 Feb 22 13:37 queuedata.json
2025-02-22 22:00:07 (11628): Guest Log: -rwx------. 1 atlas atlas   35865 Feb 22 13:38 runpilot2-wrapper.sh
2025-02-22 22:00:07 (11628): Guest Log: -rwxr-xr-x. 1 atlas atlas   10782 Feb 23 02:35 init_data.xml
2025-02-22 22:00:07 (11628): Guest Log: -rwxr-xr-x. 1 atlas atlas  503557 Feb 23 02:35 input.tar.gz
2025-02-22 22:00:07 (11628): Guest Log: -rwxr-xr-x. 1 atlas atlas   17569 Feb 23 02:35 start_atlas.sh
2025-02-22 22:00:07 (11628): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Feb 23 02:35 EVNT.43078917._002544.pool.root.1 -> /data/./ATLAS.root_0
2025-02-22 22:00:07 (11628): Guest Log: -rw-r--r--. 1 atlas atlas    2546 Feb 23 02:35 pandaJob.out
2025-02-22 22:00:07 (11628): Guest Log: -rw-------. 1 atlas atlas     424 Feb 23 02:35 setup.sh.local
2025-02-22 22:00:07 (11628): Guest Log: -rw-------. 1 atlas atlas  987744 Feb 23 02:36 agis_schedconf.cvmfs.json
2025-02-22 22:00:07 (11628): Guest Log: -rw-------. 1 atlas atlas 1582569 Feb 23 02:36 agis_ddmendpoints.agis.ALL.json
2025-02-22 22:00:07 (11628): Guest Log: drwx------. 4 atlas atlas    4096 Feb 23 02:36 pilot3
2025-02-22 22:00:07 (11628): Guest Log: -rw-------. 1 atlas atlas    1011 Feb 23 02:59 memory_monitor_summary.json
2025-02-22 22:00:07 (11628): Guest Log: -rw-------. 1 atlas atlas   57958 Feb 23 02:59 log.43078919._087909.job.log.tgz.1
2025-02-22 22:00:07 (11628): Guest Log: -rw-------. 1 atlas atlas      95 Feb 23 02:59 pilot_heartbeat.json
2025-02-22 22:00:07 (11628): Guest Log: -rw-------. 1 atlas atlas   10052 Feb 23 02:59 heartbeat.json
2025-02-22 22:00:07 (11628): Guest Log: -rw-------. 1 atlas atlas    4591 Feb 23 03:00 pilotlog.txt
2025-02-22 22:00:07 (11628): Guest Log: -rw-------. 1 atlas atlas  172463 Feb 23 03:00 log.43078919._087909.job.log.1
2025-02-22 22:00:07 (11628): Guest Log: -rw-------. 1 atlas atlas     188 Feb 23 03:00 output.list
2025-02-22 22:00:07 (11628): Guest Log: -rw-r--r--. 1 atlas atlas     620 Feb 23 03:00 runtime_log
2025-02-22 22:00:07 (11628): Guest Log: -rw-------. 1 atlas atlas  256000 Feb 23 03:00 result.tar.gz
2025-02-22 22:00:07 (11628): Guest Log: -rw-r--r--. 1 atlas atlas   10749 Feb 23 03:00 runtime_log.err
2025-02-22 22:00:07 (11628): Guest Log: -rw-------. 1 atlas atlas     633 Feb 23 03:00 2IjNDmts456n9Rq4apOajLDm4fhM0noT9bVoFjIUDmtGeKDmsVXj3n.diag
2025-02-22 22:00:07 (11628): Guest Log: Looking for outputfile HITS.43078919._087909.pool.root.1
2025-02-22 22:00:07 (11628): Guest Log: No HITS file was produced
2025-02-22 22:00:07 (11628): Guest Log: Successfully finished the ATLAS job!
2025-02-22 22:00:07 (11628): Guest Log: Copying the results back to the shared directory!
2025-02-22 22:00:07 (11628): Guest Log:  *** Contents of shared directory: ***
2025-02-22 22:00:07 (11628): Guest Log: total 335696
2025-02-22 22:00:07 (11628): Guest Log: -rwxrwxrwx. 1 root root 342957963 Feb 23 02:34 ATLAS.root_0
2025-02-22 22:00:07 (11628): Guest Log: -rwxrwxrwx. 1 root root     10782 Feb 23 02:34 init_data.xml
2025-02-22 22:00:07 (11628): Guest Log: -rwxrwxrwx. 1 root root    503557 Feb 23 02:34 input.tar.gz
2025-02-22 22:00:07 (11628): Guest Log: -rwxrwxrwx. 1 root root    256000 Feb 23 03:00 result.tar.gz
2025-02-22 22:00:07 (11628): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 23 02:34 start_atlas.sh
2025-02-22 22:00:07 (11628): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-22 22:00:07 (11628): VM Completion File Detected.
2025-02-22 22:00:07 (11628): Powering off VM.
2025-02-22 22:00:07 (11628): Successfully stopped VM.
2025-02-22 22:00:07 (11628): Deregistering VM. (boinc_9d42cde8dd258761, slot#0)
2025-02-22 22:00:07 (11628): Removing network bandwidth throttle group from VM.
2025-02-22 22:00:08 (11628): Removing VM from VirtualBox.
22:00:13 (11628): called boinc_finish(0)

</stderr_txt>
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