Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:15:44 (2284934): wrapper (7.7.26015): starting
11:15:44 (2284934): wrapper: running run_atlas (--nthreads 4)
[2025-02-26 11:15:44] Arguments: --nthreads 4
[2025-02-26 11:15:44] Threads: 4
[2025-02-26 11:15:44] Checking for CVMFS
[2025-02-26 11:15:44] No cvmfs_config command found, will try listing directly
[2025-02-26 11:15:44] CVMFS is ok
[2025-02-26 11:15:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-26 11:15:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-26 11:15:44] Further information can be found at the LHC@home message board.
[2025-02-26 11:15:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-26 11:15:44] Checking for apptainer binary...
[2025-02-26 11:15:44] which: no apptainer in ((null))
[2025-02-26 11:15:44] apptainer is not installed, using version from CVMFS
[2025-02-26 11:15:44] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-26 11:15:44] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot52/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2025-02-26 11:15:44] apptainer works
[2025-02-26 11:15:44] Set ATHENA_PROC_NUMBER=4
[2025-02-26 11:15:44] Set ATHENA_CORE_NUMBER=4
[2025-02-26 11:15:44] Starting ATLAS job with PandaID=6522879271
[2025-02-26 11:15:44] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot52/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-26 17:11:03]  *** The last 200 lines of the pilot log: ***
[2025-02-26 17:11:03] 2025-02-26 16:10:43,568 | INFO     | mean x: 1740575452.5
[2025-02-26 17:11:03] 2025-02-26 16:10:43,568 | INFO     | mean y: 2332770.648255814
[2025-02-26 17:11:03] 2025-02-26 16:10:43,569 | INFO     | -- intersect: -25449151713.98879
[2025-02-26 17:11:03] 2025-02-26 16:10:43,569 | INFO     | intersect: -25449151713.98879
[2025-02-26 17:11:03] 2025-02-26 16:10:43,569 | INFO     | chi2: 3.9850925124959007
[2025-02-26 17:11:03] 2025-02-26 16:10:43,569 | INFO     | current chi2=3.9850925124959007 (change=16.67605484566939 %)
[2025-02-26 17:11:03] 2025-02-26 16:10:43,569 | INFO     | right removable region: 343
[2025-02-26 17:11:03] 2025-02-26 16:10:43,570 | INFO     | model: linear, x: [1740565296.0, 1740565357.0, 1740565418.0, 1740565479.0, 1740565540.0, 1740565601.0, 1740565662.0, 1740565723.0, 1740565784.0, 1740565845.0, 1740
[2025-02-26 17:11:03] 2025-02-26 16:10:43,570 | INFO     | sum of square deviations: 12622636670.0
[2025-02-26 17:11:03] 2025-02-26 16:10:43,573 | INFO     | sum of deviations: 84731943463.5
[2025-02-26 17:11:03] 2025-02-26 16:10:43,573 | INFO     | mean x: 1740575757.5
[2025-02-26 17:11:03] 2025-02-26 16:10:43,573 | INFO     | mean y: 2349248.543604651
[2025-02-26 17:11:03] 2025-02-26 16:10:43,573 | INFO     | -- intersect: -11681609541.852974
[2025-02-26 17:11:03] 2025-02-26 16:10:43,573 | INFO     | intersect: -11681609541.852974
[2025-02-26 17:11:03] 2025-02-26 16:10:43,574 | INFO     | chi2: 2.488770749658178
[2025-02-26 17:11:03] 2025-02-26 16:10:43,574 | INFO     | current chi2=2.488770749658178 (change=47.96251359385886 %)
[2025-02-26 17:11:03] 2025-02-26 16:10:43,574 | INFO     | model: linear, x: [1740565601.0, 1740565662.0, 1740565723.0, 1740565784.0, 1740565845.0, 1740565906.0, 1740565967.0, 1740566028.0, 1740566089.0, 1740566150.0, 1740
[2025-02-26 17:11:03] 2025-02-26 16:10:43,575 | INFO     | sum of square deviations: 12080189290.0
[2025-02-26 17:11:03] 2025-02-26 16:10:43,578 | INFO     | sum of deviations: 15967079094.999996
[2025-02-26 17:11:03] 2025-02-26 16:10:43,578 | INFO     | mean x: 1740575910.0
[2025-02-26 17:11:03] 2025-02-26 16:10:43,578 | INFO     | mean y: 2368581.01179941
[2025-02-26 17:11:03] 2025-02-26 16:10:43,578 | INFO     | -- intersect: -2298250437.3365126
[2025-02-26 17:11:03] 2025-02-26 16:10:43,578 | INFO     | intersect: -2298250437.3365126
[2025-02-26 17:11:03] 2025-02-26 16:10:43,579 | INFO     | chi2: 0.9402054328235989
[2025-02-26 17:11:03] 2025-02-26 16:10:43,579 | INFO     | current chi2=0.9402054328235989 (change=62.222095669007196 %)
[2025-02-26 17:11:03] 2025-02-26 16:10:43,579 | INFO     | model: linear, x: [1740565906.0, 1740565967.0, 1740566028.0, 1740566089.0, 1740566150.0, 1740566211.0, 1740566272.0, 1740566333.0, 1740566394.0, 1740566455.0, 1740
[2025-02-26 17:11:03] 2025-02-26 16:10:43,580 | INFO     | sum of square deviations: 11553509647.5
[2025-02-26 17:11:03] 2025-02-26 16:10:43,583 | INFO     | sum of deviations: -570234923.5
[2025-02-26 17:11:03] 2025-02-26 16:10:43,583 | INFO     | mean x: 1740576062.5
[2025-02-26 17:11:03] 2025-02-26 16:10:43,583 | INFO     | mean y: 2373349.1826347304
[2025-02-26 17:11:03] 2025-02-26 16:10:43,583 | INFO     | -- intersect: 88281206.45961276
[2025-02-26 17:11:03] 2025-02-26 16:10:43,583 | INFO     | intersect: 88281206.45961276
[2025-02-26 17:11:03] 2025-02-26 16:10:43,584 | INFO     | chi2: 0.8265812941160949
[2025-02-26 17:11:03] 2025-02-26 16:10:43,584 | INFO     | current chi2=0.8265812941160949 (change=12.08503320027317 %)
[2025-02-26 17:11:03] 2025-02-26 16:10:43,584 | INFO     | left removable region: 30
[2025-02-26 17:11:03] 2025-02-26 16:10:43,584 | INFO     | model: linear, x: [1740566821.0, 1740566882.0, 1740566943.0, 1740567004.0, 1740567065.0, 1740567126.0, 1740567187.0, 1740567248.0, 1740567309.0, 1740567370.0, 1740
[2025-02-26 17:11:03] 2025-02-26 16:10:43,586 | INFO     | sum of square deviations: 9508390372.0
[2025-02-26 17:11:03] 2025-02-26 16:10:43,589 | INFO     | sum of deviations: 15001121647.000002
[2025-02-26 17:11:03] 2025-02-26 16:10:43,589 | INFO     | mean x: 1740576337.0
[2025-02-26 17:11:03] 2025-02-26 16:10:43,589 | INFO     | mean y: 2381374.8594249203
[2025-02-26 17:11:03] 2025-02-26 16:10:43,589 | INFO     | -- intersect: -2743677247.651101
[2025-02-26 17:11:03] 2025-02-26 16:10:43,589 | INFO     | intersect: -2743677247.651101
[2025-02-26 17:11:03] 2025-02-26 16:10:43,589 | INFO     | chi2: 0.0016395530782815193
[2025-02-26 17:11:03] 2025-02-26 16:10:43,590 | INFO     | -- intersect: -2743677247.651101
[2025-02-26 17:11:03] 2025-02-26 16:10:43,590 | INFO     | current memory leak: 1.58 B/s (using 313 data points, chi2=0.00)
[2025-02-26 17:11:03] 2025-02-26 16:10:43,591 | INFO     | ..............................
[2025-02-26 17:11:03] 2025-02-26 16:10:43,591 | INFO     | . Timing measurements:
[2025-02-26 17:11:03] 2025-02-26 16:10:43,591 | INFO     | . get job = 0 s
[2025-02-26 17:11:03] 2025-02-26 16:10:43,591 | INFO     | . initial setup = 1 s
[2025-02-26 17:11:03] 2025-02-26 16:10:43,591 | INFO     | . payload setup = 8 s
[2025-02-26 17:11:03] 2025-02-26 16:10:43,591 | INFO     | . stage-in = 0 s
[2025-02-26 17:11:03] 2025-02-26 16:10:43,591 | INFO     | . payload execution = 21248 s
[2025-02-26 17:11:03] 2025-02-26 16:10:43,591 | INFO     | . stage-out = 1 s
[2025-02-26 17:11:03] 2025-02-26 16:10:43,591 | INFO     | . log creation = 0 s
[2025-02-26 17:11:03] 2025-02-26 16:10:43,592 | INFO     | ..............................
[2025-02-26 17:11:03] 2025-02-26 16:10:43,691 | INFO     | 
[2025-02-26 17:11:03] 2025-02-26 16:10:43,691 | INFO     | job summary report
[2025-02-26 17:11:03] 2025-02-26 16:10:43,691 | INFO     | --------------------------------------------------
[2025-02-26 17:11:03] 2025-02-26 16:10:43,691 | INFO     | PanDA job id: 6522879271
[2025-02-26 17:11:03] 2025-02-26 16:10:43,691 | INFO     | task id: 43078919
[2025-02-26 17:11:03] 2025-02-26 16:10:43,691 | INFO     | errors: (none)
[2025-02-26 17:11:03] 2025-02-26 16:10:43,692 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-26 17:11:03] 2025-02-26 16:10:43,692 | INFO     | pilot state: finished 
[2025-02-26 17:11:03] 2025-02-26 16:10:43,692 | INFO     | transexitcode: 0
[2025-02-26 17:11:03] 2025-02-26 16:10:43,692 | INFO     | exeerrorcode: 0
[2025-02-26 17:11:03] 2025-02-26 16:10:43,692 | INFO     | exeerrordiag: 
[2025-02-26 17:11:03] 2025-02-26 16:10:43,692 | INFO     | exitcode: 0
[2025-02-26 17:11:03] 2025-02-26 16:10:43,692 | INFO     | exitmsg: OK
[2025-02-26 17:11:03] 2025-02-26 16:10:43,692 | INFO     | cpuconsumptiontime: 80898 s
[2025-02-26 17:11:03] 2025-02-26 16:10:43,692 | INFO     | nevents: 400
[2025-02-26 17:11:03] 2025-02-26 16:10:43,692 | INFO     | neventsw: 0
[2025-02-26 17:11:03] 2025-02-26 16:10:43,692 | INFO     | pid: 2300962
[2025-02-26 17:11:03] 2025-02-26 16:10:43,693 | INFO     | pgrp: 2300962
[2025-02-26 17:11:03] 2025-02-26 16:10:43,693 | INFO     | corecount: 4
[2025-02-26 17:11:03] 2025-02-26 16:10:43,693 | INFO     | event service: False
[2025-02-26 17:11:03] 2025-02-26 16:10:43,693 | INFO     | sizes: {0: 2363610, 1: 2363809, 7: 2364015, 11: 2364043, 21260: 2397263, 21262: 2406410, 21268: 2406524}
[2025-02-26 17:11:03] 2025-02-26 16:10:43,693 | INFO     | --------------------------------------------------
[2025-02-26 17:11:03] 2025-02-26 16:10:43,693 | INFO     | 
[2025-02-26 17:11:03] 2025-02-26 16:10:43,693 | INFO     | executing command: ls -lF /scratch/boinc/var/slot52/slots/0
[2025-02-26 17:11:03] 2025-02-26 16:10:43,722 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-26 17:11:03] 2025-02-26 16:10:43,722 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-26 17:11:03] 2025-02-26 16:10:43,723 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-26 17:11:03] 2025-02-26 16:10:43,723 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-26 17:11:03] 2025-02-26 16:10:43,723 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-26 17:11:03] 2025-02-26 16:10:43,723 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-26 17:11:03] 2025-02-26 16:10:43,723 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-26 17:11:03] 2025-02-26 16:10:43,723 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-26 17:11:03] 2025-02-26 16:10:43,723 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-26 17:11:03] 2025-02-26 16:10:43,723 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-26 17:11:03] 2025-02-26 16:10:43,723 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-26 17:11:03] 2025-02-26 16:10:43,723 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-26 17:11:03] 2025-02-26 16:10:43,724 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-26 17:11:03] 2025-02-26 16:10:43,724 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-26 17:11:03] 2025-02-26 16:10:43,724 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-26 17:11:03] 2025-02-26 16:10:43,724 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-26 17:11:03] 2025-02-26 16:10:43,724 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-26 17:11:03] 2025-02-26 16:10:43,724 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-26 17:11:03] 2025-02-26 16:10:43,724 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-26 17:11:03] 2025-02-26 16:10:43,724 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-26 17:11:03] 2025-02-26 16:10:43,724 | INFO     | job 6522879271 has completed (purged errors)
[2025-02-26 17:11:03] 2025-02-26 16:10:43,725 | INFO     | overall cleanup function is called
[2025-02-26 17:11:03] 2025-02-26 16:10:43,846 | WARNING  | process 2300962 can no longer be monitored (due to stat problems) - aborting
[2025-02-26 17:11:03] 2025-02-26 16:10:44,734 | INFO     | --- collectZombieJob: --- 10, [2300962]
[2025-02-26 17:11:03] 2025-02-26 16:10:44,735 | INFO     | zombie collector waiting for pid 2300962
[2025-02-26 17:11:03] 2025-02-26 16:10:44,735 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-26 17:11:03] 2025-02-26 16:10:44,736 | INFO     | collected zombie processes
[2025-02-26 17:11:03] 2025-02-26 16:10:44,736 | INFO     | will attempt to kill all subprocesses of pid=2300962
[2025-02-26 17:11:03] 2025-02-26 16:10:44,948 | INFO     | process IDs to be killed: [2300962] (in reverse order)
[2025-02-26 17:11:03] 2025-02-26 16:10:45,217 | WARNING  | found no corresponding commands to process id(s)
[2025-02-26 17:11:03] 2025-02-26 16:10:45,219 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-26 17:11:03] 2025-02-26 16:10:45,350 | INFO     | did not find any defunct processes belonging to 2300962
[2025-02-26 17:11:03] 2025-02-26 16:10:45,470 | INFO     | did not find any defunct processes belonging to 2300962
[2025-02-26 17:11:03] 2025-02-26 16:10:45,471 | INFO     | ready for new job
[2025-02-26 17:11:03] 2025-02-26 16:10:45,471 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-26 17:11:03] 2025-02-26 16:10:45,474 | INFO     | **************************************
[2025-02-26 17:11:03] 2025-02-26 16:10:45,475 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-26 17:11:03] 2025-02-26 16:10:45,475 | INFO     | **************************************
[2025-02-26 17:11:03] 2025-02-26 16:10:45,475 | INFO     | 
[2025-02-26 17:11:03] 2025-02-26 16:10:45,491 | INFO     | architecture information:
[2025-02-26 17:11:03] 2025-02-26 16:10:45,492 | INFO     | executing command: cat /etc/os-release
[2025-02-26 17:11:03] 2025-02-26 16:10:45,517 | INFO     | cat /etc/os-release:
[2025-02-26 17:11:03] NAME="CentOS Linux"
[2025-02-26 17:11:03] VERSION="7 (Core)"
[2025-02-26 17:11:03] ID="centos"
[2025-02-26 17:11:03] ID_LIKE="rhel fedora"
[2025-02-26 17:11:03] VERSION_ID="7"
[2025-02-26 17:11:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-26 17:11:03] ANSI_COLOR="0;31"
[2025-02-26 17:11:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-26 17:11:03] HOME_URL="https://www.centos.org/"
[2025-02-26 17:11:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-26 17:11:03] 
[2025-02-26 17:11:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-26 17:11:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-26 17:11:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-26 17:11:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-26 17:11:03] 
[2025-02-26 17:11:03] 2025-02-26 16:10:45,518 | INFO     | **************************************
[2025-02-26 17:11:03] 2025-02-26 16:10:45,794 | INFO     | using path: /scratch/boinc/var/slot52/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-02-26 17:11:03] 2025-02-26 16:10:45,796 | INFO     | using path: /scratch/boinc/var/slot52/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-02-26 17:11:03] 2025-02-26 16:10:45,797 | INFO     | skipping file size check of payload stdout file (/scratch/boinc/var/slot52/slots/0/PanDA_Pilot-6522879271/payload.stdout) since it has not been created yet
[2025-02-26 17:11:03] 2025-02-26 16:10:45,797 | INFO     | executing command: df -mP /scratch/boinc/var/slot52/slots/0
[2025-02-26 17:11:03] 2025-02-26 16:10:45,810 | INFO     | PID=2288901 has CPU usage=14.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-02-26 17:11:03] 2025-02-26 16:10:45,811 | INFO     | .. there are 28 such processes running
[2025-02-26 17:11:03] 2025-02-26 16:10:45,824 | INFO     | sufficient remaining disk space (3323895742464 B)
[2025-02-26 17:11:03] 2025-02-26 16:10:45,824 | WARNING  | skipping size check of workdir since it has not been created yet
[2025-02-26 17:11:03] 2025-02-26 16:10:45,824 | INFO     | output file size check: skipping output file /scratch/boinc/var/slot52/slots/0/PanDA_Pilot-6522879271/HITS.43078919._086951.pool.root.1 since it does not exist
[2025-02-26 17:11:03] 2025-02-26 16:10:46,021 | INFO     | executing command: df -mP /scratch/boinc/var/slot52/slots/0
[2025-02-26 17:11:03] 2025-02-26 16:10:46,046 | INFO     | sufficient remaining disk space (3323895742464 B)
[2025-02-26 17:11:03] 2025-02-26 16:10:46,046 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-26 17:11:03] 2025-02-26 16:10:46,047 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-26 17:11:03] 2025-02-26 16:10:46,047 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-26 17:11:03] 2025-02-26 16:10:46,048 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-02-26 17:11:03] 2025-02-26 16:10:46,048 | INFO     | found 0 job(s) in 20 queues
[2025-02-26 17:11:03] 2025-02-26 16:10:46,049 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-26 17:11:03] 2025-02-26 16:10:46,049 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-26 17:11:03] 2025-02-26 16:10:46,125 | INFO     | number of running child processes to parent process 2300962: 1
[2025-02-26 17:11:03] 2025-02-26 16:10:46,126 | INFO     | maximum number of monitored processes: 6
[2025-02-26 17:11:03] 2025-02-26 16:10:46,126 | INFO     | aborting job monitoring since job object (job id=6522879271) has expired
[2025-02-26 17:11:03] 2025-02-26 16:10:46,126 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-26 17:11:03] 2025-02-26 16:10:46,126 | INFO     | will abort loop
[2025-02-26 17:11:03] 2025-02-26 16:10:46,157 | INFO     | all data control threads have been joined
[2025-02-26 17:11:03] 2025-02-26 16:10:46,462 | INFO     | all payload control threads have been joined
[2025-02-26 17:11:03] 2025-02-26 16:10:46,662 | INFO     | all job control threads have been joined
[2025-02-26 17:11:03] 2025-02-26 16:10:47,052 | INFO     | [job] retrieve thread has finished
[2025-02-26 17:11:03] 2025-02-26 16:10:47,132 | INFO     | [job] job monitor thread has finished
[2025-02-26 17:11:03] 2025-02-26 16:10:47,163 | INFO     | [data] control thread has finished
[2025-02-26 17:11:03] 2025-02-26 16:10:47,183 | INFO     | [job] create_data_payload thread has finished
[2025-02-26 17:11:03] 2025-02-26 16:10:47,252 | INFO     | [payload] execute_payloads thread has finished
[2025-02-26 17:11:03] 2025-02-26 16:10:47,319 | INFO     | [job] validate thread has finished
[2025-02-26 17:11:03] 2025-02-26 16:10:47,467 | INFO     | [payload] control thread has finished
[2025-02-26 17:11:03] 2025-02-26 16:10:47,638 | INFO     | [payload] validate_pre thread has finished
[2025-02-26 17:11:03] 2025-02-26 16:10:47,667 | INFO     | [job] control thread has finished
[2025-02-26 17:11:03] 2025-02-26 16:10:47,717 | INFO     | [payload] failed_post thread has finished
[2025-02-26 17:11:03] 2025-02-26 16:10:48,053 | INFO     | [data] copytool_out thread has finished
[2025-02-26 17:11:03] 2025-02-26 16:10:48,086 | INFO     | [payload] validate_post thread has finished
[2025-02-26 17:11:03] 2025-02-26 16:10:48,103 | INFO     | [data] copytool_in thread has finished
[2025-02-26 17:11:03] 2025-02-26 16:10:48,309 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-26 17:11:03] 2025-02-26 16:10:48,700 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-26 17:11:03] 2025-02-26 16:10:49,706 | INFO     | [job] queue monitor thread has finished
[2025-02-26 17:11:03] 2025-02-26 16:10:52,315 | INFO     | [data] queue_monitor thread has finished
[2025-02-26 17:11:03] 2025-02-26 16:10:56,256 | INFO     | job.realtimelogging is not enabled
[2025-02-26 17:11:03] 2025-02-26 16:10:57,259 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-26 17:11:03] 2025-02-26 16:10:57,533 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22698773505856)>', '<ExcThread(monitor, started 22698541418240)>']
[2025-02-26 17:11:03] 2025-02-26 16:10:58,100 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-26 17:11:03] 2025-02-26 16:10:58,101 | INFO     | [monitor] control thread has ended
[2025-02-26 17:11:03] 2025-02-26 16:11:02,555 | INFO     | all workflow threads have been joined
[2025-02-26 17:11:03] 2025-02-26 16:11:02,555 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-26 17:11:03] 2025-02-26 16:11:02,556 | INFO     | traces error code: 0
[2025-02-26 17:11:03] 2025-02-26 16:11:02,556 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-26 17:11:03] 2025-02-26 16:11:02,729 [wrapper] ==== pilot stdout END ====
[2025-02-26 17:11:03] 2025-02-26 16:11:02,734 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-26 17:11:03] 2025-02-26 16:11:02,737 [wrapper] pilotpid: 2288901
[2025-02-26 17:11:03] 2025-02-26 16:11:02,743 [wrapper] Pilot exit status: 0
[2025-02-26 17:11:03] 2025-02-26 16:11:02,759 [wrapper] pandaids: 6522879271
[2025-02-26 17:11:03] 2025-02-26 16:11:02,893 [wrapper] cleanup supervisor_pilot 3871535 2288902
[2025-02-26 17:11:03] 2025-02-26 16:11:02,897 [wrapper] Test setup, not cleaning
[2025-02-26 17:11:03] 2025-02-26 16:11:02,906 [wrapper] apfmon messages muted
[2025-02-26 17:11:03] 2025-02-26 16:11:02,910 [wrapper] ==== wrapper stdout END ====
[2025-02-26 17:11:03] 2025-02-26 16:11:02,913 [wrapper] ==== wrapper stderr END ====
[2025-02-26 17:11:03]  *** Error codes and diagnostics ***
[2025-02-26 17:11:03]     "exeErrorCode": 0,
[2025-02-26 17:11:03]     "exeErrorDiag": "",
[2025-02-26 17:11:03]     "pilotErrorCode": 0,
[2025-02-26 17:11:03]     "pilotErrorDiag": "",
[2025-02-26 17:11:03]  *** Listing of results directory ***
[2025-02-26 17:11:03] total 658924
[2025-02-26 17:11:03] -rw-r--r-- 1 boinc boinc    491065 Feb 22 09:51 pilot3.tar.gz
[2025-02-26 17:11:03] -rwx------ 1 boinc boinc     35865 Feb 22 09:57 runpilot2-wrapper.sh
[2025-02-26 17:11:03] -rw-r--r-- 1 boinc boinc      5118 Feb 22 09:57 queuedata.json
[2025-02-26 17:11:03] -rw-r--r-- 1 boinc boinc       100 Feb 26 10:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-26 17:11:03] -rwxr-xr-x 1 boinc boinc      7986 Feb 26 10:06 run_atlas
[2025-02-26 17:11:03] -rw-r--r-- 1 boinc boinc       105 Feb 26 10:06 job.xml
[2025-02-26 17:11:03] -rw-r--r-- 2 boinc boinc 341082085 Feb 26 11:15 EVNT.43078917._002455.pool.root.1
[2025-02-26 17:11:03] -rw-r--r-- 1 boinc boinc      6677 Feb 26 11:15 init_data.xml
[2025-02-26 17:11:03] -rw-r--r-- 2 boinc boinc     17569 Feb 26 11:15 start_atlas.sh
[2025-02-26 17:11:03] drwxrwx--x 2 boinc boinc      4096 Feb 26 11:15 shared
[2025-02-26 17:11:03] -rw-r--r-- 2 boinc boinc    503552 Feb 26 11:15 input.tar.gz
[2025-02-26 17:11:03] -rw-r--r-- 1 boinc boinc         0 Feb 26 11:15 boinc_lockfile
[2025-02-26 17:11:03] -rw-r--r-- 1 boinc boinc      2546 Feb 26 11:15 pandaJob.out
[2025-02-26 17:11:03] -rw------- 1 boinc boinc       424 Feb 26 11:15 setup.sh.local
[2025-02-26 17:11:03] -rw------- 1 boinc boinc    990040 Feb 26 11:15 agis_schedconf.cvmfs.json
[2025-02-26 17:11:03] drwx------ 4 boinc boinc      4096 Feb 26 11:15 pilot3
[2025-02-26 17:11:03] -rw------- 1 boinc boinc 324370896 Feb 26 17:09 HITS.43078919._086951.pool.root.1
[2025-02-26 17:11:03] -rw-r--r-- 1 boinc boinc       532 Feb 26 17:10 boinc_task_state.xml
[2025-02-26 17:11:03] -rw------- 1 boinc boinc      1025 Feb 26 17:10 memory_monitor_summary.json
[2025-02-26 17:11:03] -rw------- 1 boinc boinc   1569202 Feb 26 17:10 agis_ddmendpoints.agis.ALL.json
[2025-02-26 17:11:03] -rw------- 1 boinc boinc    416026 Feb 26 17:10 log.43078919._086951.job.log.tgz.1
[2025-02-26 17:11:03] -rw------- 1 boinc boinc        95 Feb 26 17:10 pilot_heartbeat.json
[2025-02-26 17:11:03] -rw------- 1 boinc boinc      7710 Feb 26 17:10 heartbeat.json
[2025-02-26 17:11:03] -rw-r--r-- 1 boinc boinc      8192 Feb 26 17:11 boinc_mmap_file
[2025-02-26 17:11:03] -rw-r--r-- 1 boinc boinc        28 Feb 26 17:11 wrapper_checkpoint.txt
[2025-02-26 17:11:03] -rw------- 1 boinc boinc      6039 Feb 26 17:11 pilotlog.txt
[2025-02-26 17:11:03] -rw------- 1 boinc boinc   2326974 Feb 26 17:11 log.43078919._086951.job.log.1
[2025-02-26 17:11:03] -rw------- 1 boinc boinc       357 Feb 26 17:11 output.list
[2025-02-26 17:11:03] -rw-r--r-- 1 boinc boinc       620 Feb 26 17:11 runtime_log
[2025-02-26 17:11:03] -rw------- 1 boinc boinc   2764800 Feb 26 17:11 result.tar.gz
[2025-02-26 17:11:03] -rw-r--r-- 1 boinc boinc     11424 Feb 26 17:11 runtime_log.err
[2025-02-26 17:11:03] -rw------- 1 boinc boinc       667 Feb 26 17:11 BRDLDmUV056n9Rq4apOajLDm4fhM0noT9bVoFjIUDmg6dKDmpxauCn.diag
[2025-02-26 17:11:03] -rw-r--r-- 1 boinc boinc     21763 Feb 26 17:11 stderr.txt
[2025-02-26 17:11:03] HITS file was successfully produced:
[2025-02-26 17:11:03] -rw------- 1 boinc boinc 324370896 Feb 26 17:09 shared/HITS.pool.root.1
[2025-02-26 17:11:03]  *** Contents of shared directory: ***
[2025-02-26 17:11:03] total 653080
[2025-02-26 17:11:03] -rw-r--r-- 2 boinc boinc 341082085 Feb 26 11:15 ATLAS.root_0
[2025-02-26 17:11:03] -rw-r--r-- 2 boinc boinc     17569 Feb 26 11:15 start_atlas.sh
[2025-02-26 17:11:03] -rw-r--r-- 2 boinc boinc    503552 Feb 26 11:15 input.tar.gz
[2025-02-26 17:11:03] -rw------- 1 boinc boinc 324370896 Feb 26 17:09 HITS.pool.root.1
[2025-02-26 17:11:03] -rw------- 1 boinc boinc   2764800 Feb 26 17:11 result.tar.gz
17:11:04 (2284934): run_atlas exited; CPU time 80566.531702
17:11:04 (2284934): called boinc_finish(0)

</stderr_txt>
]]>

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