Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:27:59 (3643325): wrapper (7.7.26015): starting
11:27:59 (3643325): wrapper: running run_atlas (--nthreads 4)
[2025-02-23 11:27:59] Arguments: --nthreads 4
[2025-02-23 11:27:59] Threads: 4
[2025-02-23 11:27:59] Checking for CVMFS
[2025-02-23 11:27:59] No cvmfs_config command found, will try listing directly
[2025-02-23 11:27:59] CVMFS is ok
[2025-02-23 11:27:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-23 11:27:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-23 11:27:59] Further information can be found at the LHC@home message board.
[2025-02-23 11:27:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-23 11:27:59] Checking for apptainer binary...
[2025-02-23 11:27:59] which: no apptainer in ((null))
[2025-02-23 11:27:59] apptainer is not installed, using version from CVMFS
[2025-02-23 11:27:59] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-23 11:28:00] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot68/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2025-02-23 11:28:00] apptainer works
[2025-02-23 11:28:00] Set ATHENA_PROC_NUMBER=4
[2025-02-23 11:28:00] Set ATHENA_CORE_NUMBER=4
[2025-02-23 11:28:00] Starting ATLAS job with PandaID=6521361457
[2025-02-23 11:28:00] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot68/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-23 17:34:22]  *** The last 200 lines of the pilot log: ***
[2025-02-23 17:34:22] 2025-02-23 16:32:56,819 | INFO     | model: linear, x: [1740306526.0, 1740306587.0, 1740306648.0, 1740306709.0, 1740306770.0, 1740306831.0, 1740306892.0, 1740306953.0, 1740307014.0, 1740307075.0, 1740
[2025-02-23 17:34:22] 2025-02-23 16:32:56,822 | INFO     | sum of square deviations: 14346910860.0
[2025-02-23 17:34:22] 2025-02-23 16:32:56,825 | INFO     | sum of deviations: 34860645816.999985
[2025-02-23 17:34:22] 2025-02-23 16:32:56,826 | INFO     | mean x: 1740317445.0
[2025-02-23 17:34:22] 2025-02-23 16:32:56,826 | INFO     | mean y: 2357443.8579387185
[2025-02-23 17:34:22] 2025-02-23 16:32:56,826 | INFO     | -- intersect: -4226329180.83134
[2025-02-23 17:34:22] 2025-02-23 16:32:56,826 | INFO     | intersect: -4226329180.83134
[2025-02-23 17:34:22] 2025-02-23 16:32:56,826 | INFO     | chi2: 4.405389012043659
[2025-02-23 17:34:22] 2025-02-23 16:32:56,827 | INFO     | model: linear, x: [1740306526.0, 1740306587.0, 1740306648.0, 1740306709.0, 1740306770.0, 1740306831.0, 1740306892.0, 1740306953.0, 1740307014.0, 1740307075.0, 1740
[2025-02-23 17:34:22] 2025-02-23 16:32:56,827 | INFO     | sum of square deviations: 13755764892.5
[2025-02-23 17:34:22] 2025-02-23 16:32:56,831 | INFO     | sum of deviations: 59842060454.49999
[2025-02-23 17:34:22] 2025-02-23 16:32:56,831 | INFO     | mean x: 1740317292.5
[2025-02-23 17:34:22] 2025-02-23 16:32:56,831 | INFO     | mean y: 2363813.8220338984
[2025-02-23 17:34:22] 2025-02-23 16:32:56,831 | INFO     | -- intersect: -7568583599.257034
[2025-02-23 17:34:22] 2025-02-23 16:32:56,831 | INFO     | intersect: -7568583599.257034
[2025-02-23 17:34:22] 2025-02-23 16:32:56,832 | INFO     | chi2: 3.430635502862343
[2025-02-23 17:34:22] 2025-02-23 16:32:56,832 | INFO     | current chi2=3.430635502862343 (change=22.126388986681746 %)
[2025-02-23 17:34:22] 2025-02-23 16:32:56,832 | INFO     | right removable region: 353
[2025-02-23 17:34:22] 2025-02-23 16:32:56,832 | INFO     | model: linear, x: [1740306831.0, 1740306892.0, 1740306953.0, 1740307014.0, 1740307075.0, 1740307136.0, 1740307197.0, 1740307258.0, 1740307319.0, 1740307380.0, 1740
[2025-02-23 17:34:22] 2025-02-23 16:32:56,832 | INFO     | sum of square deviations: 13755764892.5
[2025-02-23 17:34:22] 2025-02-23 16:32:56,836 | INFO     | sum of deviations: -40114812893.50001
[2025-02-23 17:34:22] 2025-02-23 16:32:56,836 | INFO     | mean x: 1740317597.5
[2025-02-23 17:34:22] 2025-02-23 16:32:56,836 | INFO     | mean y: 2376737.65819209
[2025-02-23 17:34:22] 2025-02-23 16:32:56,836 | INFO     | -- intersect: 5077522710.605254
[2025-02-23 17:34:22] 2025-02-23 16:32:56,836 | INFO     | intersect: 5077522710.605254
[2025-02-23 17:34:22] 2025-02-23 16:32:56,837 | INFO     | chi2: 2.3637079608317024
[2025-02-23 17:34:22] 2025-02-23 16:32:56,837 | INFO     | current chi2=2.3637079608317024 (change=46.34507975641455 %)
[2025-02-23 17:34:22] 2025-02-23 16:32:56,837 | INFO     | model: linear, x: [1740307136.0, 1740307197.0, 1740307258.0, 1740307319.0, 1740307380.0, 1740307441.0, 1740307502.0, 1740307563.0, 1740307624.0, 1740307685.0, 1740
[2025-02-23 17:34:22] 2025-02-23 16:32:56,838 | INFO     | sum of square deviations: 13181084350.0
[2025-02-23 17:34:22] 2025-02-23 16:32:56,841 | INFO     | sum of deviations: -92721700802.00006
[2025-02-23 17:34:22] 2025-02-23 16:32:56,841 | INFO     | mean x: 1740317750.0
[2025-02-23 17:34:22] 2025-02-23 16:32:56,842 | INFO     | mean y: 2390697.424068768
[2025-02-23 17:34:22] 2025-02-23 16:32:56,842 | INFO     | -- intersect: 12244571798.094282
[2025-02-23 17:34:22] 2025-02-23 16:32:56,842 | INFO     | intersect: 12244571798.094282
[2025-02-23 17:34:22] 2025-02-23 16:32:56,843 | INFO     | chi2: 1.4488562328156844
[2025-02-23 17:34:22] 2025-02-23 16:32:56,843 | INFO     | current chi2=1.4488562328156844 (change=38.704093025693204 %)
[2025-02-23 17:34:22] 2025-02-23 16:32:56,843 | INFO     | model: linear, x: [1740307441.0, 1740307502.0, 1740307563.0, 1740307624.0, 1740307685.0, 1740307746.0, 1740307807.0, 1740307868.0, 1740307929.0, 1740307990.0, 1740
[2025-02-23 17:34:22] 2025-02-23 16:32:56,844 | INFO     | sum of square deviations: 12622636670.0
[2025-02-23 17:34:22] 2025-02-23 16:32:56,847 | INFO     | sum of deviations: -91976806835.49994
[2025-02-23 17:34:22] 2025-02-23 16:32:56,847 | INFO     | mean x: 1740317902.5
[2025-02-23 17:34:22] 2025-02-23 16:32:56,847 | INFO     | mean y: 2390475.444767442
[2025-02-23 17:34:22] 2025-02-23 16:32:56,847 | INFO     | -- intersect: 12683487756.097534
[2025-02-23 17:34:22] 2025-02-23 16:32:56,847 | INFO     | intersect: 12683487756.097534
[2025-02-23 17:34:22] 2025-02-23 16:32:56,848 | INFO     | chi2: 1.420845304827734
[2025-02-23 17:34:22] 2025-02-23 16:32:56,848 | INFO     | current chi2=1.420845304827734 (change=1.9333131440870677 %)
[2025-02-23 17:34:22] 2025-02-23 16:32:56,848 | INFO     | left removable region: 30
[2025-02-23 17:34:22] 2025-02-23 16:32:56,848 | INFO     | model: linear, x: [1740308356.0, 1740308417.0, 1740308478.0, 1740308539.0, 1740308600.0, 1740308661.0, 1740308722.0, 1740308783.0, 1740308844.0, 1740308905.0, 1740
[2025-02-23 17:34:22] 2025-02-23 16:32:56,848 | INFO     | sum of square deviations: 10449170802.0
[2025-02-23 17:34:22] 2025-02-23 16:32:56,851 | INFO     | sum of deviations: -19670569227.999996
[2025-02-23 17:34:22] 2025-02-23 16:32:56,851 | INFO     | mean x: 1740318177.0
[2025-02-23 17:34:22] 2025-02-23 16:32:56,852 | INFO     | mean y: 2383649.2724458203
[2025-02-23 17:34:22] 2025-02-23 16:32:56,852 | INFO     | -- intersect: 3278533482.412598
[2025-02-23 17:34:22] 2025-02-23 16:32:56,852 | INFO     | intersect: 3278533482.412598
[2025-02-23 17:34:22] 2025-02-23 16:32:56,852 | INFO     | chi2: 0.2224989368931691
[2025-02-23 17:34:22] 2025-02-23 16:32:56,852 | INFO     | -- intersect: 3278533482.412598
[2025-02-23 17:34:22] 2025-02-23 16:32:56,852 | INFO     | current memory leak: -1.88 B/s (using 323 data points, chi2=0.22)
[2025-02-23 17:34:22] 2025-02-23 16:32:56,853 | INFO     | ..............................
[2025-02-23 17:34:22] 2025-02-23 16:32:56,853 | INFO     | . Timing measurements:
[2025-02-23 17:34:22] 2025-02-23 16:32:56,853 | INFO     | . get job = 0 s
[2025-02-23 17:34:22] 2025-02-23 16:32:56,853 | INFO     | . initial setup = 1 s
[2025-02-23 17:34:22] 2025-02-23 16:32:56,853 | INFO     | . payload setup = 8 s
[2025-02-23 17:34:22] 2025-02-23 16:32:56,853 | INFO     | . stage-in = 0 s
[2025-02-23 17:34:22] 2025-02-23 16:32:56,854 | INFO     | . payload execution = 21844 s
[2025-02-23 17:34:22] 2025-02-23 16:32:56,854 | INFO     | . stage-out = 1 s
[2025-02-23 17:34:22] 2025-02-23 16:32:56,854 | INFO     | . log creation = 0 s
[2025-02-23 17:34:22] 2025-02-23 16:32:56,854 | INFO     | ..............................
[2025-02-23 17:34:22] 2025-02-23 16:32:56,953 | INFO     | 
[2025-02-23 17:34:22] 2025-02-23 16:32:56,954 | INFO     | job summary report
[2025-02-23 17:34:22] 2025-02-23 16:32:56,954 | INFO     | --------------------------------------------------
[2025-02-23 17:34:22] 2025-02-23 16:32:56,954 | INFO     | PanDA job id: 6521361457
[2025-02-23 17:34:22] 2025-02-23 16:32:56,954 | INFO     | task id: 43078919
[2025-02-23 17:34:22] 2025-02-23 16:32:56,954 | INFO     | errors: (none)
[2025-02-23 17:34:22] 2025-02-23 16:32:56,954 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-23 17:34:22] 2025-02-23 16:32:56,954 | INFO     | pilot state: finished 
[2025-02-23 17:34:22] 2025-02-23 16:32:56,954 | INFO     | transexitcode: 0
[2025-02-23 17:34:22] 2025-02-23 16:32:56,954 | INFO     | exeerrorcode: 0
[2025-02-23 17:34:22] 2025-02-23 16:32:56,954 | INFO     | exeerrordiag: 
[2025-02-23 17:34:22] 2025-02-23 16:32:56,955 | INFO     | exitcode: 0
[2025-02-23 17:34:22] 2025-02-23 16:32:56,955 | INFO     | exitmsg: OK
[2025-02-23 17:34:22] 2025-02-23 16:32:56,955 | INFO     | cpuconsumptiontime: 83012 s
[2025-02-23 17:34:22] 2025-02-23 16:32:56,955 | INFO     | nevents: 400
[2025-02-23 17:34:22] 2025-02-23 16:32:56,955 | INFO     | neventsw: 0
[2025-02-23 17:34:22] 2025-02-23 16:32:56,955 | INFO     | pid: 3655563
[2025-02-23 17:34:22] 2025-02-23 16:32:56,955 | INFO     | pgrp: 3655563
[2025-02-23 17:34:22] 2025-02-23 16:32:56,955 | INFO     | corecount: 4
[2025-02-23 17:34:22] 2025-02-23 16:32:56,955 | INFO     | event service: False
[2025-02-23 17:34:22] 2025-02-23 16:32:56,955 | INFO     | sizes: {0: 2383201, 1: 2383400, 7: 2383606, 11: 2383634, 21856: 2416998, 21858: 2425961, 21859: 2426145, 21866: 2426315}
[2025-02-23 17:34:22] 2025-02-23 16:32:56,955 | INFO     | --------------------------------------------------
[2025-02-23 17:34:22] 2025-02-23 16:32:56,955 | INFO     | 
[2025-02-23 17:34:22] 2025-02-23 16:32:56,956 | INFO     | executing command: ls -lF /scratch/boinc/var/slot68/slots/0
[2025-02-23 17:34:22] 2025-02-23 16:32:56,984 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-23 17:34:22] 2025-02-23 16:32:56,984 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-23 17:34:22] 2025-02-23 16:32:56,985 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-23 17:34:22] 2025-02-23 16:32:56,985 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-23 17:34:22] 2025-02-23 16:32:56,985 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-23 17:34:22] 2025-02-23 16:32:56,985 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-23 17:34:22] 2025-02-23 16:32:56,985 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-23 17:34:22] 2025-02-23 16:32:56,985 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-23 17:34:22] 2025-02-23 16:32:56,985 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-23 17:34:22] 2025-02-23 16:32:56,985 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-23 17:34:22] 2025-02-23 16:32:56,985 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-23 17:34:22] 2025-02-23 16:32:56,985 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-23 17:34:22] 2025-02-23 16:32:56,986 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-23 17:34:22] 2025-02-23 16:32:56,986 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-23 17:34:22] 2025-02-23 16:32:56,986 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-23 17:34:22] 2025-02-23 16:32:56,986 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-23 17:34:22] 2025-02-23 16:32:56,986 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-23 17:34:22] 2025-02-23 16:32:56,986 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-23 17:34:22] 2025-02-23 16:32:56,986 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-23 17:34:22] 2025-02-23 16:32:56,986 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-23 17:34:22] 2025-02-23 16:32:56,986 | INFO     | job 6521361457 has completed (purged errors)
[2025-02-23 17:34:22] 2025-02-23 16:32:56,987 | INFO     | overall cleanup function is called
[2025-02-23 17:34:22] 2025-02-23 16:32:57,995 | INFO     | --- collectZombieJob: --- 10, [3655563]
[2025-02-23 17:34:22] 2025-02-23 16:32:57,996 | INFO     | zombie collector waiting for pid 3655563
[2025-02-23 17:34:22] 2025-02-23 16:32:57,996 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-23 17:34:22] 2025-02-23 16:32:57,996 | INFO     | collected zombie processes
[2025-02-23 17:34:22] 2025-02-23 16:32:57,996 | INFO     | will attempt to kill all subprocesses of pid=3655563
[2025-02-23 17:34:22] 2025-02-23 16:32:58,356 | INFO     | process IDs to be killed: [3655563] (in reverse order)
[2025-02-23 17:34:22] 2025-02-23 16:32:58,624 | WARNING  | found no corresponding commands to process id(s)
[2025-02-23 17:34:22] 2025-02-23 16:32:58,625 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-23 17:34:22] 2025-02-23 16:32:58,651 | INFO     | did not find any defunct processes belonging to 3655563
[2025-02-23 17:34:22] 2025-02-23 16:32:58,674 | INFO     | did not find any defunct processes belonging to 3655563
[2025-02-23 17:34:22] 2025-02-23 16:32:58,675 | INFO     | ready for new job
[2025-02-23 17:34:22] 2025-02-23 16:32:58,675 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-23 17:34:22] 2025-02-23 16:32:58,677 | INFO     | **************************************
[2025-02-23 17:34:22] 2025-02-23 16:32:58,677 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-23 17:34:22] 2025-02-23 16:32:58,678 | INFO     | **************************************
[2025-02-23 17:34:22] 2025-02-23 16:32:58,678 | INFO     | 
[2025-02-23 17:34:22] 2025-02-23 16:32:58,686 | INFO     | architecture information:
[2025-02-23 17:34:22] 2025-02-23 16:32:58,686 | INFO     | executing command: cat /etc/os-release
[2025-02-23 17:34:22] 2025-02-23 16:32:58,707 | INFO     | cat /etc/os-release:
[2025-02-23 17:34:22] NAME="CentOS Linux"
[2025-02-23 17:34:22] VERSION="7 (Core)"
[2025-02-23 17:34:22] ID="centos"
[2025-02-23 17:34:22] ID_LIKE="rhel fedora"
[2025-02-23 17:34:22] VERSION_ID="7"
[2025-02-23 17:34:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-23 17:34:22] ANSI_COLOR="0;31"
[2025-02-23 17:34:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-23 17:34:22] HOME_URL="https://www.centos.org/"
[2025-02-23 17:34:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-23 17:34:22] 
[2025-02-23 17:34:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-23 17:34:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-23 17:34:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-23 17:34:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-23 17:34:22] 
[2025-02-23 17:34:22] 2025-02-23 16:32:58,707 | INFO     | **************************************
[2025-02-23 17:34:22] 2025-02-23 16:32:59,208 | INFO     | executing command: df -mP /scratch/boinc/var/slot68/slots/0
[2025-02-23 17:34:22] 2025-02-23 16:32:59,231 | INFO     | sufficient remaining disk space (3216370565120 B)
[2025-02-23 17:34:22] 2025-02-23 16:32:59,231 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-23 17:34:22] 2025-02-23 16:32:59,231 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-23 17:34:22] 2025-02-23 16:32:59,352 | INFO     | all payload control threads have been joined
[2025-02-23 17:34:22] 2025-02-23 16:32:59,556 | INFO     | all job control threads have been joined
[2025-02-23 17:34:22] 2025-02-23 16:32:59,648 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-02-23 17:34:22] 2025-02-23 16:32:59,648 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-02-23 17:34:22] 2025-02-23 16:32:59,648 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-23 17:34:22] 2025-02-23 16:32:59,648 | INFO     | will abort loop
[2025-02-23 17:34:22] 2025-02-23 16:32:59,960 | INFO     | all data control threads have been joined
[2025-02-23 17:34:22] 2025-02-23 16:33:00,180 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-23 17:34:22] 2025-02-23 16:33:00,214 | INFO     | PID=3648019 has CPU usage=12.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-02-23 17:34:22] 2025-02-23 16:33:00,214 | INFO     | .. there are 21 such processes running
[2025-02-23 17:34:22] 2025-02-23 16:33:00,214 | INFO     | found 0 job(s) in 20 queues
[2025-02-23 17:34:22] 2025-02-23 16:33:00,215 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-23 17:34:22] 2025-02-23 16:33:00,215 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-23 17:34:22] 2025-02-23 16:33:00,237 | INFO     | [job] retrieve thread has finished
[2025-02-23 17:34:22] 2025-02-23 16:33:00,358 | INFO     | [payload] control thread has finished
[2025-02-23 17:34:22] 2025-02-23 16:33:00,470 | INFO     | [payload] failed_post thread has finished
[2025-02-23 17:34:22] 2025-02-23 16:33:00,519 | INFO     | [job] create_data_payload thread has finished
[2025-02-23 17:34:22] 2025-02-23 16:33:00,540 | INFO     | [payload] execute_payloads thread has finished
[2025-02-23 17:34:22] 2025-02-23 16:33:00,558 | INFO     | [job] control thread has finished
[2025-02-23 17:34:22] 2025-02-23 16:33:00,652 | INFO     | [job] job monitor thread has finished
[2025-02-23 17:34:22] 2025-02-23 16:33:00,819 | INFO     | [data] copytool_in thread has finished
[2025-02-23 17:34:22] 2025-02-23 16:33:00,883 | INFO     | [job] validate thread has finished
[2025-02-23 17:34:22] 2025-02-23 16:33:00,966 | INFO     | [data] control thread has finished
[2025-02-23 17:34:22] 2025-02-23 16:33:01,106 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-23 17:34:22] 2025-02-23 16:33:01,136 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-23 17:34:22] 2025-02-23 16:33:01,433 | INFO     | [payload] validate_post thread has finished
[2025-02-23 17:34:22] 2025-02-23 16:33:01,623 | INFO     | [payload] validate_pre thread has finished
[2025-02-23 17:34:22] 2025-02-23 16:33:01,963 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-23 17:34:22] 2025-02-23 16:33:02,185 | INFO     | [data] copytool_out thread has finished
[2025-02-23 17:34:22] 2025-02-23 16:33:02,968 | INFO     | [job] queue monitor thread has finished
[2025-02-23 17:34:22] 2025-02-23 16:33:05,114 | INFO     | [data] queue_monitor thread has finished
[2025-02-23 17:34:22] 2025-02-23 16:33:06,159 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23076462102336)>', '<ExcThread(monitor, started 23076232206080)>']
[2025-02-23 17:34:22] 2025-02-23 16:33:06,245 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-23 17:34:22] 2025-02-23 16:33:06,245 | INFO     | [monitor] control thread has ended
[2025-02-23 17:34:22] 2025-02-23 16:33:11,184 | INFO     | all workflow threads have been joined
[2025-02-23 17:34:22] 2025-02-23 16:33:11,185 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-23 17:34:22] 2025-02-23 16:33:11,185 | INFO     | traces error code: 0
[2025-02-23 17:34:22] 2025-02-23 16:33:11,185 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-23 17:34:22] 2025-02-23 16:33:11,338 [wrapper] ==== pilot stdout END ====
[2025-02-23 17:34:22] 2025-02-23 16:33:11,342 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-23 17:34:22] 2025-02-23 16:33:11,347 [wrapper] pilotpid: 3648019
[2025-02-23 17:34:22] 2025-02-23 16:33:11,350 [wrapper] Pilot exit status: 0
[2025-02-23 17:34:22] 2025-02-23 16:33:11,365 [wrapper] pandaids: 6521361457
[2025-02-23 17:34:22] 2025-02-23 16:33:11,525 [wrapper] cleanup supervisor_pilot  752323 3648020
[2025-02-23 17:34:22] 2025-02-23 16:33:11,530 [wrapper] Test setup, not cleaning
[2025-02-23 17:34:22] 2025-02-23 16:33:11,537 [wrapper] apfmon messages muted
[2025-02-23 17:34:22] 2025-02-23 16:33:11,541 [wrapper] ==== wrapper stdout END ====
[2025-02-23 17:34:22] 2025-02-23 16:33:11,547 [wrapper] ==== wrapper stderr END ====
[2025-02-23 17:34:22]  *** Error codes and diagnostics ***
[2025-02-23 17:34:22]     "exeErrorCode": 0,
[2025-02-23 17:34:22]     "exeErrorDiag": "",
[2025-02-23 17:34:22]     "pilotErrorCode": 0,
[2025-02-23 17:34:22]     "pilotErrorDiag": "",
[2025-02-23 17:34:22]  *** Listing of results directory ***
[2025-02-23 17:34:22] total 659128
[2025-02-23 17:34:22] -rw-r--r-- 1 boinc boinc    491065 Feb 20 22:13 pilot3.tar.gz
[2025-02-23 17:34:22] -rwx------ 1 boinc boinc     35865 Feb 20 22:32 runpilot2-wrapper.sh
[2025-02-23 17:34:22] -rw-r--r-- 1 boinc boinc      5118 Feb 20 22:33 queuedata.json
[2025-02-23 17:34:22] -rw-r--r-- 1 boinc boinc       100 Feb 23 11:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-23 17:34:22] -rwxr-xr-x 1 boinc boinc      7986 Feb 23 11:27 run_atlas
[2025-02-23 17:34:22] -rw-r--r-- 1 boinc boinc       105 Feb 23 11:27 job.xml
[2025-02-23 17:34:22] -rw-r--r-- 1 boinc boinc      6676 Feb 23 11:27 init_data.xml
[2025-02-23 17:34:22] -rw-r--r-- 2 boinc boinc 343227484 Feb 23 11:27 EVNT.43078917._001843.pool.root.1
[2025-02-23 17:34:22] drwxrwx--x 2 boinc boinc      4096 Feb 23 11:27 shared
[2025-02-23 17:34:22] -rw-r--r-- 2 boinc boinc    503559 Feb 23 11:27 input.tar.gz
[2025-02-23 17:34:22] -rw-r--r-- 2 boinc boinc     17569 Feb 23 11:27 start_atlas.sh
[2025-02-23 17:34:22] -rw-r--r-- 1 boinc boinc         0 Feb 23 11:27 boinc_lockfile
[2025-02-23 17:34:22] -rw-r--r-- 1 boinc boinc      2546 Feb 23 11:28 pandaJob.out
[2025-02-23 17:34:22] -rw------- 1 boinc boinc       424 Feb 23 11:28 setup.sh.local
[2025-02-23 17:34:22] -rw------- 1 boinc boinc    987736 Feb 23 11:28 agis_schedconf.cvmfs.json
[2025-02-23 17:34:22] drwx------ 4 boinc boinc      4096 Feb 23 11:28 pilot3
[2025-02-23 17:34:22] -rw------- 1 boinc boinc 322341311 Feb 23 17:31 HITS.43078919._080651.pool.root.1
[2025-02-23 17:34:22] -rw-r--r-- 1 boinc boinc       530 Feb 23 17:32 boinc_task_state.xml
[2025-02-23 17:34:22] -rw------- 1 boinc boinc        95 Feb 23 17:32 pilot_heartbeat.json
[2025-02-23 17:34:22] -rw------- 1 boinc boinc      1032 Feb 23 17:32 memory_monitor_summary.json
[2025-02-23 17:34:22] -rw------- 1 boinc boinc   1582569 Feb 23 17:32 agis_ddmendpoints.agis.ALL.json
[2025-02-23 17:34:22] -rw------- 1 boinc boinc    446679 Feb 23 17:32 log.43078919._080651.job.log.tgz.1
[2025-02-23 17:34:22] -rw------- 1 boinc boinc      7707 Feb 23 17:32 heartbeat.json
[2025-02-23 17:34:22] -rw------- 1 boinc boinc      4808 Feb 23 17:33 pilotlog.txt
[2025-02-23 17:34:22] -rw------- 1 boinc boinc   2334784 Feb 23 17:33 log.43078919._080651.job.log.1
[2025-02-23 17:34:22] -rw------- 1 boinc boinc       357 Feb 23 17:33 output.list
[2025-02-23 17:34:22] -rw-r--r-- 1 boinc boinc       620 Feb 23 17:33 runtime_log
[2025-02-23 17:34:22] -rw------- 1 boinc boinc   2805760 Feb 23 17:33 result.tar.gz
[2025-02-23 17:34:22] -rw-r--r-- 1 boinc boinc     11424 Feb 23 17:33 runtime_log.err
[2025-02-23 17:34:22] -rw------- 1 boinc boinc       667 Feb 23 17:33 0IqMDmOLT56n9Rq4apOajLDm4fhM0noT9bVoFjIUDmlScKDmGV6lkm.diag
[2025-02-23 17:34:22] -rw-r--r-- 1 boinc boinc        28 Feb 23 17:34 wrapper_checkpoint.txt
[2025-02-23 17:34:22] -rw-r--r-- 1 boinc boinc      8192 Feb 23 17:34 boinc_mmap_file
[2025-02-23 17:34:22] -rw-r--r-- 1 boinc boinc     21461 Feb 23 17:34 stderr.txt
[2025-02-23 17:34:22] HITS file was successfully produced:
[2025-02-23 17:34:22] -rw------- 1 boinc boinc 322341311 Feb 23 17:31 shared/HITS.pool.root.1
[2025-02-23 17:34:22]  *** Contents of shared directory: ***
[2025-02-23 17:34:22] total 653232
[2025-02-23 17:34:22] -rw-r--r-- 2 boinc boinc 343227484 Feb 23 11:27 ATLAS.root_0
[2025-02-23 17:34:22] -rw-r--r-- 2 boinc boinc    503559 Feb 23 11:27 input.tar.gz
[2025-02-23 17:34:22] -rw-r--r-- 2 boinc boinc     17569 Feb 23 11:27 start_atlas.sh
[2025-02-23 17:34:22] -rw------- 1 boinc boinc 322341311 Feb 23 17:31 HITS.pool.root.1
[2025-02-23 17:34:22] -rw------- 1 boinc boinc   2805760 Feb 23 17:33 result.tar.gz
17:34:23 (3643325): run_atlas exited; CPU time 82705.289903
17:34:23 (3643325): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN