Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:36:40 (38829): wrapper (7.7.26015): starting
13:36:40 (38829): wrapper: running run_atlas (--nthreads 10)
[2025-02-19 13:36:40] Arguments: --nthreads 10
[2025-02-19 13:36:40] Threads: 10
[2025-02-19 13:36:40] Checking for CVMFS
[2025-02-19 13:36:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-02-19 13:36:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-02-19 13:36:41] Running cvmfs_config stat atlas.cern.ch
[2025-02-19 13:36:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-02-19 13:36:41] 2.11.2.0 41501 6505 220996 142834 1 134 16157835 18432001 13356 130560 0 24742564 99.080 51065578 35767 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-02-19 13:36:41] CVMFS is ok
[2025-02-19 13:36:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-19 13:36:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-19 13:36:41] Further information can be found at the LHC@home message board.
[2025-02-19 13:36:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-19 13:36:41] Checking for apptainer binary...
[2025-02-19 13:36:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-02-19 13:36:41] Running /usr/bin/apptainer --version
[2025-02-19 13:36:41] apptainer version 1.3.2-1.el7
[2025-02-19 13:36:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-19 13:36:45] c-211-21.aglt2.org
[2025-02-19 13:36:45] apptainer works
[2025-02-19 13:36:45] Set ATHENA_PROC_NUMBER=10
[2025-02-19 13:36:45] Set ATHENA_CORE_NUMBER=10
[2025-02-19 13:36:45] Starting ATLAS job with PandaID=6518839146
[2025-02-19 13:36:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-20 13:05:56]  *** The last 200 lines of the pilot log: ***
[2025-02-20 13:05:57] 2025-02-20 18:05:30,826 | INFO     | CPU arch script returned: x86-64-v2
[2025-02-20 13:05:57] 2025-02-20 18:05:30,826 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6518839146/memory_monitor_summary.json (trf name=prmon)
[2025-02-20 13:05:57] 2025-02-20 18:05:30,827 | INFO     | extracted standard info from prmon json
[2025-02-20 13:05:57] 2025-02-20 18:05:30,827 | INFO     | extracted standard memory fields from prmon json
[2025-02-20 13:05:57] 2025-02-20 18:05:30,840 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-02-20 13:05:57] 2025-02-20 18:05:30,840 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-02-20 13:05:57] 2025-02-20 18:05:30,841 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-02-20 13:05:57] 2025-02-20 18:05:31,212 | INFO     | monitor loop #4704: job 0:6518839146 is in state 'finished'
[2025-02-20 13:05:57] 2025-02-20 18:05:31,239 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-20 13:05:57] 2025-02-20 18:05:31,338 | INFO     | fitting pss+swap vs Time
[2025-02-20 13:05:57] 2025-02-20 18:05:31,340 | INFO     | model: linear, x: [1739990266.0, 1739990327.0, 1739990388.0, 1739990449.0, 1739990510.0, 1739990571.0, 1739990632.0, 1739990693.0, 1739990754.0, 1739990815.0, 1739
[2025-02-20 13:05:57] 2025-02-20 18:05:31,372 | INFO     | sum of square deviations: 822050082901.3761
[2025-02-20 13:05:57] 2025-02-20 18:05:31,966 | INFO     | sum of deviations: 558144078151.8953
[2025-02-20 13:05:57] 2025-02-20 18:05:31,966 | INFO     | mean x: 1740032448.4421966
[2025-02-20 13:05:57] 2025-02-20 18:05:31,966 | INFO     | mean y: 2648810.073699422
[2025-02-20 13:05:57] 2025-02-20 18:05:31,966 | INFO     | -- intersect: -1178774106.961237
[2025-02-20 13:05:57] 2025-02-20 18:05:31,967 | INFO     | intersect: -1178774106.961237
[2025-02-20 13:05:57] 2025-02-20 18:05:31,968 | INFO     | chi2: 11.089230401789074
[2025-02-20 13:05:57] 2025-02-20 18:05:31,970 | INFO     | model: linear, x: [1739990266.0, 1739990327.0, 1739990388.0, 1739990449.0, 1739990510.0, 1739990571.0, 1739990632.0, 1739990693.0, 1739990754.0, 1739990815.0, 1739
[2025-02-20 13:05:57] 2025-02-20 18:05:31,971 | INFO     | sum of square deviations: 813173365336.9219
[2025-02-20 13:05:57] 2025-02-20 18:05:32,029 | INFO     | sum of deviations: 1053556669992.2067
[2025-02-20 13:05:57] 2025-02-20 18:05:32,029 | INFO     | mean x: 1740032295.9456127
[2025-02-20 13:05:57] 2025-02-20 18:05:32,030 | INFO     | mean y: 2657320.9760696157
[2025-02-20 13:05:57] 2025-02-20 18:05:32,030 | INFO     | -- intersect: -2251748331.668241
[2025-02-20 13:05:57] 2025-02-20 18:05:32,030 | INFO     | intersect: -2251748331.668241
[2025-02-20 13:05:57] 2025-02-20 18:05:32,032 | INFO     | chi2: 7.11856547297547
[2025-02-20 13:05:57] 2025-02-20 18:05:32,032 | INFO     | current chi2=7.11856547297547 (change=35.80649679866873 %)
[2025-02-20 13:05:57] 2025-02-20 18:05:32,034 | INFO     | model: linear, x: [1739990266.0, 1739990327.0, 1739990388.0, 1739990449.0, 1739990510.0, 1739990571.0, 1739990632.0, 1739990693.0, 1739990754.0, 1739990815.0, 1739
[2025-02-20 13:05:57] 2025-02-20 18:05:32,034 | INFO     | sum of square deviations: 804360452275.5154
[2025-02-20 13:05:57] 2025-02-20 18:05:32,126 | INFO     | sum of deviations: 1250506611162.022
[2025-02-20 13:05:57] 2025-02-20 18:05:32,127 | INFO     | mean x: 1740032143.4461427
[2025-02-20 13:05:57] 2025-02-20 18:05:32,127 | INFO     | mean y: 2660721.466521106
[2025-02-20 13:05:57] 2025-02-20 18:05:32,127 | INFO     | -- intersect: -2702496764.6557736
[2025-02-20 13:05:57] 2025-02-20 18:05:32,127 | INFO     | intersect: -2702496764.6557736
[2025-02-20 13:05:57] 2025-02-20 18:05:32,133 | INFO     | chi2: 5.508448202192925
[2025-02-20 13:05:57] 2025-02-20 18:05:32,133 | INFO     | current chi2=5.508448202192925 (change=22.618563766746338 %)
[2025-02-20 13:05:57] 2025-02-20 18:05:32,133 | INFO     | right removable region: 1373
[2025-02-20 13:05:57] 2025-02-20 18:05:32,135 | INFO     | model: linear, x: [1739990571.0, 1739990632.0, 1739990693.0, 1739990754.0, 1739990815.0, 1739990876.0, 1739990937.0, 1739990998.0, 1739991059.0, 1739991120.0, 1739
[2025-02-20 13:05:57] 2025-02-20 18:05:32,136 | INFO     | sum of square deviations: 813172569896.921
[2025-02-20 13:05:57] 2025-02-20 18:05:32,251 | INFO     | sum of deviations: 157780660020.41714
[2025-02-20 13:05:57] 2025-02-20 18:05:32,251 | INFO     | mean x: 1740032600.9456127
[2025-02-20 13:05:57] 2025-02-20 18:05:32,251 | INFO     | mean y: 2655685.085569253
[2025-02-20 13:05:57] 2025-02-20 18:05:32,252 | INFO     | -- intersect: -334964522.9706905
[2025-02-20 13:05:57] 2025-02-20 18:05:32,252 | INFO     | intersect: -334964522.9706905
[2025-02-20 13:05:57] 2025-02-20 18:05:32,257 | INFO     | chi2: 8.388545554047182
[2025-02-20 13:05:57] 2025-02-20 18:05:32,257 | INFO     | current chi2=8.388545554047182 (change=24.354123324069256 %)
[2025-02-20 13:05:57] 2025-02-20 18:05:32,257 | INFO     | left removable region: 10
[2025-02-20 13:05:57] 2025-02-20 18:05:32,259 | INFO     | model: linear, x: [1739990876.0, 1739990937.0, 1739990998.0, 1739991059.0, 1739991120.0, 1739991181.0, 1739991242.0, 1739991303.0, 1739991364.0, 1739991425.0, 1739
[2025-02-20 13:05:57] 2025-02-20 18:05:32,259 | INFO     | sum of square deviations: 785195823900.0878
[2025-02-20 13:05:57] 2025-02-20 18:05:32,376 | INFO     | sum of deviations: 554373742678.7246
[2025-02-20 13:05:57] 2025-02-20 18:05:32,381 | INFO     | mean x: 1740032417.9537785
[2025-02-20 13:05:57] 2025-02-20 18:05:32,381 | INFO     | mean y: 2672869.5194424065
[2025-02-20 13:05:57] 2025-02-20 18:05:32,381 | INFO     | -- intersect: -1225846506.8725684
[2025-02-20 13:05:57] 2025-02-20 18:05:32,382 | INFO     | intersect: -1225846506.8725684
[2025-02-20 13:05:57] 2025-02-20 18:05:32,383 | INFO     | chi2: 1.3627762001494967
[2025-02-20 13:05:57] 2025-02-20 18:05:32,384 | INFO     | -- intersect: -1225846506.8725684
[2025-02-20 13:05:57] 2025-02-20 18:05:32,384 | INFO     | current memory leak: 0.71 B/s (using 1363 data points, chi2=1.36)
[2025-02-20 13:05:57] 2025-02-20 18:05:32,390 | INFO     | ..............................
[2025-02-20 13:05:57] 2025-02-20 18:05:32,390 | INFO     | . Timing measurements:
[2025-02-20 13:05:57] 2025-02-20 18:05:32,390 | INFO     | . get job = 0 s
[2025-02-20 13:05:57] 2025-02-20 18:05:32,391 | INFO     | . initial setup = 2 s
[2025-02-20 13:05:57] 2025-02-20 18:05:32,391 | INFO     | . payload setup = 9 s
[2025-02-20 13:05:57] 2025-02-20 18:05:32,391 | INFO     | . stage-in = 0 s
[2025-02-20 13:05:57] 2025-02-20 18:05:32,391 | INFO     | . payload execution = 84378 s
[2025-02-20 13:05:57] 2025-02-20 18:05:32,391 | INFO     | . stage-out = 12 s
[2025-02-20 13:05:57] 2025-02-20 18:05:32,391 | INFO     | . log creation = 2 s
[2025-02-20 13:05:57] 2025-02-20 18:05:32,392 | INFO     | ..............................
[2025-02-20 13:05:57] 2025-02-20 18:05:34,901 | INFO     | 
[2025-02-20 13:05:57] 2025-02-20 18:05:34,901 | INFO     | job summary report
[2025-02-20 13:05:57] 2025-02-20 18:05:34,901 | INFO     | --------------------------------------------------
[2025-02-20 13:05:57] 2025-02-20 18:05:34,901 | INFO     | PanDA job id: 6518839146
[2025-02-20 13:05:57] 2025-02-20 18:05:34,902 | INFO     | task id: 43205094
[2025-02-20 13:05:57] 2025-02-20 18:05:34,902 | INFO     | errors: (none)
[2025-02-20 13:05:57] 2025-02-20 18:05:34,902 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-20 13:05:57] 2025-02-20 18:05:34,902 | INFO     | pilot state: finished 
[2025-02-20 13:05:57] 2025-02-20 18:05:34,902 | INFO     | transexitcode: 0
[2025-02-20 13:05:57] 2025-02-20 18:05:34,902 | INFO     | exeerrorcode: 0
[2025-02-20 13:05:57] 2025-02-20 18:05:34,902 | INFO     | exeerrordiag: 
[2025-02-20 13:05:57] 2025-02-20 18:05:35,002 | INFO     | exitcode: 0
[2025-02-20 13:05:57] 2025-02-20 18:05:35,002 | INFO     | exitmsg: OK
[2025-02-20 13:05:57] 2025-02-20 18:05:35,002 | INFO     | cpuconsumptiontime: 191293 s
[2025-02-20 13:05:57] 2025-02-20 18:05:35,002 | INFO     | nevents: 400
[2025-02-20 13:05:57] 2025-02-20 18:05:35,003 | INFO     | neventsw: 0
[2025-02-20 13:05:57] 2025-02-20 18:05:35,015 | INFO     | pid: 9491
[2025-02-20 13:05:57] 2025-02-20 18:05:35,015 | INFO     | pgrp: 9491
[2025-02-20 13:05:57] 2025-02-20 18:05:35,015 | INFO     | corecount: 10
[2025-02-20 13:05:57] 2025-02-20 18:05:35,015 | INFO     | event service: False
[2025-02-20 13:05:57] 2025-02-20 18:05:35,027 | INFO     | sizes: {0: 2389319, 1: 2389319, 9: 2389553, 12: 2389581, 84393: 2450402, 84395: 2450401, 84412: 2459526, 84414: 2459582, 84490: 2459752}
[2025-02-20 13:05:57] 2025-02-20 18:05:35,027 | INFO     | --------------------------------------------------
[2025-02-20 13:05:57] 2025-02-20 18:05:35,027 | INFO     | 
[2025-02-20 13:05:57] 2025-02-20 18:05:35,028 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-02-20 13:05:57] 2025-02-20 18:05:35,872 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-20 13:05:57] 2025-02-20 18:05:35,873 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-20 13:05:57] 2025-02-20 18:05:35,873 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-20 13:05:57] 2025-02-20 18:05:35,873 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-20 13:05:57] 2025-02-20 18:05:35,873 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-20 13:05:57] 2025-02-20 18:05:35,873 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-20 13:05:57] 2025-02-20 18:05:35,873 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-20 13:05:57] 2025-02-20 18:05:35,896 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-20 13:05:57] 2025-02-20 18:05:35,896 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-20 13:05:57] 2025-02-20 18:05:35,897 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-20 13:05:57] 2025-02-20 18:05:35,897 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-20 13:05:57] 2025-02-20 18:05:35,897 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-20 13:05:57] 2025-02-20 18:05:35,897 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-20 13:05:57] 2025-02-20 18:05:35,897 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-20 13:05:57] 2025-02-20 18:05:35,898 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-20 13:05:57] 2025-02-20 18:05:35,924 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-20 13:05:57] 2025-02-20 18:05:35,924 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-20 13:05:57] 2025-02-20 18:05:35,924 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-20 13:05:57] 2025-02-20 18:05:35,925 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-20 13:05:57] 2025-02-20 18:05:35,925 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-20 13:05:57] 2025-02-20 18:05:35,925 | INFO     | job 6518839146 has completed (purged errors)
[2025-02-20 13:05:57] 2025-02-20 18:05:35,939 | INFO     | overall cleanup function is called
[2025-02-20 13:05:57] 2025-02-20 18:05:37,003 | INFO     | --- collectZombieJob: --- 10, [9491]
[2025-02-20 13:05:57] 2025-02-20 18:05:37,003 | INFO     | zombie collector waiting for pid 9491
[2025-02-20 13:05:57] 2025-02-20 18:05:37,004 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-20 13:05:57] 2025-02-20 18:05:37,004 | INFO     | collected zombie processes
[2025-02-20 13:05:57] 2025-02-20 18:05:37,004 | INFO     | will attempt to kill all subprocesses of pid=9491
[2025-02-20 13:05:57] 2025-02-20 18:05:39,686 | INFO     | process IDs to be killed: [9491] (in reverse order)
[2025-02-20 13:05:57] 2025-02-20 18:05:40,774 | INFO     | PID=44502 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-02-20 13:05:57] 2025-02-20 18:05:40,774 | INFO     | .. there are 12 such processes running
[2025-02-20 13:05:57] 2025-02-20 18:05:40,864 | WARNING  | found no corresponding commands to process id(s)
[2025-02-20 13:05:57] 2025-02-20 18:05:40,864 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-20 13:05:57] 2025-02-20 18:05:40,884 | INFO     | did not find any defunct processes belonging to 9491
[2025-02-20 13:05:57] 2025-02-20 18:05:40,904 | INFO     | did not find any defunct processes belonging to 9491
[2025-02-20 13:05:57] 2025-02-20 18:05:40,905 | INFO     | ready for new job
[2025-02-20 13:05:57] 2025-02-20 18:05:40,906 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-20 13:05:57] 2025-02-20 18:05:40,915 | INFO     | **************************************
[2025-02-20 13:05:57] 2025-02-20 18:05:40,916 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-20 13:05:57] 2025-02-20 18:05:40,916 | INFO     | **************************************
[2025-02-20 13:05:57] 2025-02-20 18:05:40,916 | INFO     | 
[2025-02-20 13:05:57] 2025-02-20 18:05:40,920 | INFO     | architecture information:
[2025-02-20 13:05:57] 2025-02-20 18:05:40,921 | INFO     | executing command: cat /etc/os-release
[2025-02-20 13:05:57] 2025-02-20 18:05:40,945 | INFO     | cat /etc/os-release:
[2025-02-20 13:05:57] NAME="CentOS Linux"
[2025-02-20 13:05:57] VERSION="7 (Core)"
[2025-02-20 13:05:57] ID="centos"
[2025-02-20 13:05:57] ID_LIKE="rhel fedora"
[2025-02-20 13:05:57] VERSION_ID="7"
[2025-02-20 13:05:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-20 13:05:57] ANSI_COLOR="0;31"
[2025-02-20 13:05:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-20 13:05:57] HOME_URL="https://www.centos.org/"
[2025-02-20 13:05:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-20 13:05:57] 
[2025-02-20 13:05:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-20 13:05:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-20 13:05:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-20 13:05:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-20 13:05:57] 
[2025-02-20 13:05:57] 2025-02-20 18:05:40,946 | INFO     | **************************************
[2025-02-20 13:05:57] 2025-02-20 18:05:41,448 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-02-20 13:05:57] 2025-02-20 18:05:41,631 | INFO     | sufficient remaining disk space (56369348608 B)
[2025-02-20 13:05:57] 2025-02-20 18:05:41,631 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-20 13:05:57] 2025-02-20 18:05:41,632 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-20 13:05:57] 2025-02-20 18:05:41,632 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-20 13:05:57] 2025-02-20 18:05:41,632 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-02-20 13:05:57] 2025-02-20 18:05:41,632 | INFO     | found 0 job(s) in 20 queues
[2025-02-20 13:05:57] 2025-02-20 18:05:41,633 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-20 13:05:57] 2025-02-20 18:05:41,633 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-20 13:05:57] 2025-02-20 18:05:41,742 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-20 13:05:57] 2025-02-20 18:05:41,810 | INFO     | all data control threads have been joined
[2025-02-20 13:05:57] 2025-02-20 18:05:42,427 | INFO     | all payload control threads have been joined
[2025-02-20 13:05:57] 2025-02-20 18:05:42,441 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-20 13:05:57] 2025-02-20 18:05:42,441 | INFO     | aborting loop
[2025-02-20 13:05:57] 2025-02-20 18:05:42,638 | INFO     | [job] retrieve thread has finished
[2025-02-20 13:05:57] 2025-02-20 18:05:42,816 | INFO     | [data] control thread has finished
[2025-02-20 13:05:57] 2025-02-20 18:05:42,871 | INFO     | all job control threads have been joined
[2025-02-20 13:05:57] 2025-02-20 18:05:42,996 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-20 13:05:57] 2025-02-20 18:05:43,048 | INFO     | [job] validate thread has finished
[2025-02-20 13:05:57] 2025-02-20 18:05:43,059 | INFO     | [data] copytool_in thread has finished
[2025-02-20 13:05:57] 2025-02-20 18:05:43,308 | INFO     | [payload] execute_payloads thread has finished
[2025-02-20 13:05:57] 2025-02-20 18:05:43,318 | INFO     | [payload] validate_pre thread has finished
[2025-02-20 13:05:57] 2025-02-20 18:05:43,433 | INFO     | [payload] control thread has finished
[2025-02-20 13:05:57] 2025-02-20 18:05:43,447 | INFO     | [job] job monitor thread has finished
[2025-02-20 13:05:57] 2025-02-20 18:05:43,598 | INFO     | [payload] validate_post thread has finished
[2025-02-20 13:05:57] 2025-02-20 18:05:43,608 | INFO     | [payload] failed_post thread has finished
[2025-02-20 13:05:57] 2025-02-20 18:05:43,639 | INFO     | [data] copytool_out thread has finished
[2025-02-20 13:05:57] 2025-02-20 18:05:43,670 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-20 13:05:57] 2025-02-20 18:05:43,829 | INFO     | [job] create_data_payload thread has finished
[2025-02-20 13:05:57] 2025-02-20 18:05:43,876 | INFO     | [job] control thread has finished
[2025-02-20 13:05:57] 2025-02-20 18:05:44,675 | INFO     | [job] queue monitor thread has finished
[2025-02-20 13:05:57] 2025-02-20 18:05:45,751 | INFO     | [data] queue_monitor thread has finished
[2025-02-20 13:05:57] 2025-02-20 18:05:46,231 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140517913757504)>', '<ExcThread(monitor, started 140517463533312)>']
[2025-02-20 13:05:57] 2025-02-20 18:05:46,700 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-20 13:05:57] 2025-02-20 18:05:46,700 | INFO     | [monitor] control thread has ended
[2025-02-20 13:05:57] 2025-02-20 18:05:51,257 | INFO     | all workflow threads have been joined
[2025-02-20 13:05:57] 2025-02-20 18:05:51,257 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-20 13:05:57] 2025-02-20 18:05:51,257 | INFO     | traces error code: 0
[2025-02-20 13:05:57] 2025-02-20 18:05:51,258 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-20 13:05:57] 2025-02-20 18:05:52,855 [wrapper] ==== pilot stdout END ====
[2025-02-20 13:05:57] 2025-02-20 18:05:52,889 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-20 13:05:57] 2025-02-20 18:05:52,919 [wrapper] pilotpid: 44502
[2025-02-20 13:05:57] 2025-02-20 18:05:52,947 [wrapper] Pilot exit status: 0
[2025-02-20 13:05:57] 2025-02-20 18:05:53,136 [wrapper] pandaids: 6518839146
[2025-02-20 13:05:57] 2025-02-20 18:05:54,032 [wrapper] cleanup supervisor_pilot  1527 44503
[2025-02-20 13:05:57] 2025-02-20 18:05:54,059 [wrapper] Test setup, not cleaning
[2025-02-20 13:05:57] 2025-02-20 18:05:54,122 [wrapper] apfmon messages muted
[2025-02-20 13:05:57] 2025-02-20 18:05:54,154 [wrapper] ==== wrapper stdout END ====
[2025-02-20 13:05:57] 2025-02-20 18:05:54,199 [wrapper] ==== wrapper stderr END ====
[2025-02-20 13:05:57]  *** Error codes and diagnostics ***
[2025-02-20 13:05:57]     "exeErrorCode": 0,
[2025-02-20 13:05:57]     "exeErrorDiag": "",
[2025-02-20 13:05:57]     "pilotErrorCode": 0,
[2025-02-20 13:05:57]     "pilotErrorDiag": "",
[2025-02-20 13:05:57]  *** Listing of results directory ***
[2025-02-20 13:05:57] total 684900
[2025-02-20 13:05:57] -rw-r--r-- 1 boincer umatlas    491065 Feb 19 09:57 pilot3.tar.gz
[2025-02-20 13:05:57] -rw-r--r-- 1 boincer umatlas      5118 Feb 19 10:36 queuedata.json
[2025-02-20 13:05:57] -rwx------ 1 boincer umatlas     35865 Feb 19 10:37 runpilot2-wrapper.sh
[2025-02-20 13:05:57] -rw-r--r-- 1 boincer umatlas       100 Feb 19 13:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-20 13:05:57] -rwxr-xr-x 1 boincer umatlas      7986 Feb 19 13:36 run_atlas
[2025-02-20 13:05:57] -rw-r--r-- 1 boincer umatlas       105 Feb 19 13:36 job.xml
[2025-02-20 13:05:57] -rw-r--r-- 2 boincer umatlas 342377507 Feb 19 13:36 EVNT.43092757._001618.pool.root.1
[2025-02-20 13:05:57] -rw-r--r-- 2 boincer umatlas     17569 Feb 19 13:36 start_atlas.sh
[2025-02-20 13:05:57] drwxrwx--x 2 boincer umatlas      4096 Feb 19 13:36 shared
[2025-02-20 13:05:57] -rw-r--r-- 2 boincer umatlas    503556 Feb 19 13:36 input.tar.gz
[2025-02-20 13:05:57] -rw-r--r-- 1 boincer umatlas         0 Feb 19 13:36 boinc_lockfile
[2025-02-20 13:05:57] -rw-r--r-- 1 boincer umatlas      2549 Feb 19 13:36 pandaJob.out
[2025-02-20 13:05:57] -rw------- 1 boincer umatlas       467 Feb 19 13:36 setup.sh.local
[2025-02-20 13:05:57] -rw------- 1 boincer umatlas    985826 Feb 19 13:37 agis_schedconf.cvmfs.json
[2025-02-20 13:05:57] drwx------ 4 boincer umatlas      4096 Feb 19 13:37 pilot3
[2025-02-20 13:05:57] -rw------- 1 boincer umatlas 327341494 Feb 20 12:56 HITS.43205094._021063.pool.root.1
[2025-02-20 13:05:57] -rw-r--r-- 1 boincer umatlas       533 Feb 20 12:57 boinc_task_state.xml
[2025-02-20 13:05:57] -rw------- 1 boincer umatlas      1061 Feb 20 13:03 memory_monitor_summary.json
[2025-02-20 13:05:57] -rw------- 1 boincer umatlas   1586690 Feb 20 13:04 agis_ddmendpoints.agis.ALL.json
[2025-02-20 13:05:57] -rw------- 1 boincer umatlas   1473186 Feb 20 13:04 log.43205094._021063.job.log.tgz.1
[2025-02-20 13:05:57] -rw-r--r-- 1 boincer umatlas      6037 Feb 20 13:04 init_data.xml
[2025-02-20 13:05:57] -rw------- 1 boincer umatlas        95 Feb 20 13:05 pilot_heartbeat.json
[2025-02-20 13:05:57] -rw------- 1 boincer umatlas      7774 Feb 20 13:05 heartbeat.json
[2025-02-20 13:05:57] -rw-r--r-- 1 boincer umatlas        29 Feb 20 13:05 wrapper_checkpoint.txt
[2025-02-20 13:05:57] -rw-r--r-- 1 boincer umatlas      8192 Feb 20 13:05 boinc_mmap_file
[2025-02-20 13:05:57] -rw------- 1 boincer umatlas      4338 Feb 20 13:05 pilotlog.txt
[2025-02-20 13:05:57] -rw------- 1 boincer umatlas  12432353 Feb 20 13:05 log.43205094._021063.job.log.1
[2025-02-20 13:05:57] -rw------- 1 boincer umatlas       357 Feb 20 13:05 output.list
[2025-02-20 13:05:57] -rw-r--r-- 1 boincer umatlas       620 Feb 20 13:05 runtime_log
[2025-02-20 13:05:57] -rw------- 1 boincer umatlas  13926400 Feb 20 13:05 result.tar.gz
[2025-02-20 13:05:57] -rw------- 1 boincer umatlas       667 Feb 20 13:05 VeBLDmiJ146nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmHIoKDm8hDn8m.diag
[2025-02-20 13:05:57] -rw-r--r-- 1 boincer umatlas     11421 Feb 20 13:05 runtime_log.err
[2025-02-20 13:05:57] -rw-r--r-- 1 boincer umatlas     21783 Feb 20 13:05 stderr.txt
[2025-02-20 13:05:57] HITS file was successfully produced:
[2025-02-20 13:05:57] -rw------- 1 boincer umatlas 327341494 Feb 20 12:56 shared/HITS.pool.root.1
[2025-02-20 13:05:57]  *** Contents of shared directory: ***
[2025-02-20 13:05:57] total 668144
[2025-02-20 13:05:57] -rw-r--r-- 2 boincer umatlas 342377507 Feb 19 13:36 ATLAS.root_0
[2025-02-20 13:05:57] -rw-r--r-- 2 boincer umatlas     17569 Feb 19 13:36 start_atlas.sh
[2025-02-20 13:05:57] -rw-r--r-- 2 boincer umatlas    503556 Feb 19 13:36 input.tar.gz
[2025-02-20 13:05:57] -rw------- 1 boincer umatlas 327341494 Feb 20 12:56 HITS.pool.root.1
[2025-02-20 13:05:57] -rw------- 1 boincer umatlas  13926400 Feb 20 13:05 result.tar.gz
13:05:58 (38829): run_atlas exited; CPU time 191039.747674
13:05:58 (38829): called boinc_finish(0)

</stderr_txt>
]]>

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