Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:38:06 (904234): wrapper (7.7.26015): starting
00:38:06 (904234): wrapper: running run_atlas (--nthreads 4)
[2025-02-20 00:38:06] Arguments: --nthreads 4
[2025-02-20 00:38:06] Threads: 4
[2025-02-20 00:38:06] Checking for CVMFS
[2025-02-20 00:38:06] No cvmfs_config command found, will try listing directly
[2025-02-20 00:38:06] CVMFS is ok
[2025-02-20 00:38:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-20 00:38:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-20 00:38:06] Further information can be found at the LHC@home message board.
[2025-02-20 00:38:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-20 00:38:06] Checking for apptainer binary...
[2025-02-20 00:38:06] which: no apptainer in ((null))
[2025-02-20 00:38:06] apptainer is not installed, using version from CVMFS
[2025-02-20 00:38:06] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-20 00:38:07] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot32/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2025-02-20 00:38:07] apptainer works
[2025-02-20 00:38:07] Set ATHENA_PROC_NUMBER=4
[2025-02-20 00:38:07] Set ATHENA_CORE_NUMBER=4
[2025-02-20 00:38:07] Starting ATLAS job with PandaID=6512117402
[2025-02-20 00:38:07] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot32/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-20 02:42:12]  *** The last 200 lines of the pilot log: ***
[2025-02-20 02:42:12] 2025-02-20 01:41:51,275 | INFO     | model: linear, x: [1740008333.0, 1740008394.0, 1740008455.0, 1740008516.0, 1740008577.0, 1740008638.0, 1740008699.0, 1740008760.0, 1740008821.0, 1740008882.0, 1740
[2025-02-20 02:42:12] 2025-02-20 01:41:51,275 | INFO     | sum of square deviations: 483971865.0
[2025-02-20 02:42:12] 2025-02-20 01:41:51,276 | INFO     | sum of deviations: 46084075375.5
[2025-02-20 02:42:12] 2025-02-20 01:41:51,276 | INFO     | mean x: 1740011840.5
[2025-02-20 02:42:12] 2025-02-20 01:41:51,276 | INFO     | mean y: 2187362.0086206896
[2025-02-20 02:42:12] 2025-02-20 01:41:51,276 | INFO     | -- intersect: -165682726598.56735
[2025-02-20 02:42:12] 2025-02-20 01:41:51,276 | INFO     | intersect: -165682726598.56735
[2025-02-20 02:42:12] 2025-02-20 01:41:51,277 | INFO     | chi2: 3.9676910525348177
[2025-02-20 02:42:12] 2025-02-20 01:41:51,277 | INFO     | current chi2=3.9676910525348177 (change=0.2311935889764006 %)
[2025-02-20 02:42:12] 2025-02-20 01:41:51,277 | INFO     | right removable region: 115
[2025-02-20 02:42:12] 2025-02-20 01:41:51,277 | INFO     | model: linear, x: [1740008638.0, 1740008699.0, 1740008760.0, 1740008821.0, 1740008882.0, 1740008943.0, 1740009004.0, 1740009065.0, 1740009126.0, 1740009187.0, 1740
[2025-02-20 02:42:12] 2025-02-20 01:41:51,277 | INFO     | sum of square deviations: 483971865.0
[2025-02-20 02:42:12] 2025-02-20 01:41:51,278 | INFO     | sum of deviations: 21607674034.499992
[2025-02-20 02:42:12] 2025-02-20 01:41:51,278 | INFO     | mean x: 1740012145.5
[2025-02-20 02:42:12] 2025-02-20 01:41:51,278 | INFO     | mean y: 2254114.3879310344
[2025-02-20 02:42:12] 2025-02-20 01:41:51,278 | INFO     | -- intersect: -77683285015.11287
[2025-02-20 02:42:12] 2025-02-20 01:41:51,278 | INFO     | intersect: -77683285015.11287
[2025-02-20 02:42:12] 2025-02-20 01:41:51,278 | INFO     | chi2: 1.4947294471845778
[2025-02-20 02:42:12] 2025-02-20 01:41:51,278 | INFO     | current chi2=1.4947294471845778 (change=62.41457036889446 %)
[2025-02-20 02:42:12] 2025-02-20 01:41:51,279 | INFO     | model: linear, x: [1740008943.0, 1740009004.0, 1740009065.0, 1740009126.0, 1740009187.0, 1740009248.0, 1740009309.0, 1740009370.0, 1740009431.0, 1740009492.0, 1740
[2025-02-20 02:42:12] 2025-02-20 01:41:51,279 | INFO     | sum of square deviations: 424045160.0
[2025-02-20 02:42:12] 2025-02-20 01:41:51,279 | INFO     | sum of deviations: 799960953.9999986
[2025-02-20 02:42:12] 2025-02-20 01:41:51,280 | INFO     | mean x: 1740012298.0
[2025-02-20 02:42:12] 2025-02-20 01:41:51,280 | INFO     | mean y: 2307089.5765765766
[2025-02-20 02:42:12] 2025-02-20 01:41:51,280 | INFO     | -- intersect: -3280225124.397543
[2025-02-20 02:42:12] 2025-02-20 01:41:51,280 | INFO     | intersect: -3280225124.397543
[2025-02-20 02:42:12] 2025-02-20 01:41:51,280 | INFO     | chi2: 0.08281082140770743
[2025-02-20 02:42:12] 2025-02-20 01:41:51,280 | INFO     | current chi2=0.08281082140770743 (change=94.45981200385881 %)
[2025-02-20 02:42:12] 2025-02-20 01:41:51,280 | INFO     | model: linear, x: [1740009248.0, 1740009309.0, 1740009370.0, 1740009431.0, 1740009492.0, 1740009553.0, 1740009614.0, 1740009675.0, 1740009736.0, 1740009797.0, 1740
[2025-02-20 02:42:12] 2025-02-20 01:41:51,283 | INFO     | sum of square deviations: 369281342.5
[2025-02-20 02:42:12] 2025-02-20 01:41:51,283 | INFO     | sum of deviations: -2258526280.9999995
[2025-02-20 02:42:12] 2025-02-20 01:41:51,283 | INFO     | mean x: 1740012450.5
[2025-02-20 02:42:12] 2025-02-20 01:41:51,283 | INFO     | mean y: 2315358.603773585
[2025-02-20 02:42:12] 2025-02-20 01:41:51,283 | INFO     | -- intersect: 10644238999.036436
[2025-02-20 02:42:12] 2025-02-20 01:41:51,284 | INFO     | intersect: 10644238999.036436
[2025-02-20 02:42:12] 2025-02-20 01:41:51,284 | INFO     | chi2: 0.004273721830487999
[2025-02-20 02:42:12] 2025-02-20 01:41:51,284 | INFO     | current chi2=0.004273721830487999 (change=94.8391746901689 %)
[2025-02-20 02:42:12] 2025-02-20 01:41:51,284 | INFO     | model: linear, x: [1740009553.0, 1740009614.0, 1740009675.0, 1740009736.0, 1740009797.0, 1740009858.0, 1740009919.0, 1740009980.0, 1740010041.0, 1740010102.0, 1740
[2025-02-20 02:42:12] 2025-02-20 01:41:51,284 | INFO     | sum of square deviations: 319447850.0
[2025-02-20 02:42:12] 2025-02-20 01:41:51,285 | INFO     | sum of deviations: -1789936663.9999998
[2025-02-20 02:42:12] 2025-02-20 01:41:51,285 | INFO     | mean x: 1740012603.0
[2025-02-20 02:42:12] 2025-02-20 01:41:51,285 | INFO     | mean y: 2313929.0198019804
[2025-02-20 02:42:12] 2025-02-20 01:41:51,285 | INFO     | -- intersect: 9751987792.630955
[2025-02-20 02:42:12] 2025-02-20 01:41:51,285 | INFO     | intersect: 9751987792.630955
[2025-02-20 02:42:12] 2025-02-20 01:41:51,285 | INFO     | chi2: 0.004107826949484041
[2025-02-20 02:42:12] 2025-02-20 01:41:51,285 | INFO     | current chi2=0.004107826949484041 (change=3.8817426024429635 %)
[2025-02-20 02:42:12] 2025-02-20 01:41:51,286 | INFO     | left removable region: 40
[2025-02-20 02:42:12] 2025-02-20 01:41:51,286 | INFO     | model: linear, x: [1740010773.0, 1740010834.0, 1740010895.0, 1740010956.0, 1740011017.0, 1740011078.0, 1740011139.0, 1740011200.0, 1740011261.0, 1740011322.0, 1740
[2025-02-20 02:42:12] 2025-02-20 01:41:51,286 | INFO     | sum of square deviations: 130793150.0
[2025-02-20 02:42:12] 2025-02-20 01:41:51,286 | INFO     | sum of deviations: 154006883.00000003
[2025-02-20 02:42:12] 2025-02-20 01:41:51,286 | INFO     | mean x: 1740013030.0
[2025-02-20 02:42:12] 2025-02-20 01:41:51,286 | INFO     | mean y: 2306289.5866666664
[2025-02-20 02:42:12] 2025-02-20 01:41:51,286 | INFO     | -- intersect: -2046531765.9971735
[2025-02-20 02:42:12] 2025-02-20 01:41:51,287 | INFO     | intersect: -2046531765.9971735
[2025-02-20 02:42:12] 2025-02-20 01:41:51,287 | INFO     | chi2: 5.219020377422627e-05
[2025-02-20 02:42:12] 2025-02-20 01:41:51,287 | INFO     | -- intersect: -2046531765.9971735
[2025-02-20 02:42:12] 2025-02-20 01:41:51,287 | INFO     | current memory leak: 1.18 B/s (using 75 data points, chi2=0.00)
[2025-02-20 02:42:12] 2025-02-20 01:41:51,287 | INFO     | ..............................
[2025-02-20 02:42:12] 2025-02-20 01:41:51,288 | INFO     | . Timing measurements:
[2025-02-20 02:42:12] 2025-02-20 01:41:51,288 | INFO     | . get job = 0 s
[2025-02-20 02:42:12] 2025-02-20 01:41:51,288 | INFO     | . initial setup = 1 s
[2025-02-20 02:42:12] 2025-02-20 01:41:51,288 | INFO     | . payload setup = 8 s
[2025-02-20 02:42:12] 2025-02-20 01:41:51,288 | INFO     | . stage-in = 0 s
[2025-02-20 02:42:12] 2025-02-20 01:41:51,288 | INFO     | . payload execution = 7369 s
[2025-02-20 02:42:12] 2025-02-20 01:41:51,288 | INFO     | . stage-out = 0 s
[2025-02-20 02:42:12] 2025-02-20 01:41:51,288 | INFO     | . log creation = 0 s
[2025-02-20 02:42:12] 2025-02-20 01:41:51,288 | INFO     | ..............................
[2025-02-20 02:42:12] 2025-02-20 01:41:51,391 | INFO     | 
[2025-02-20 02:42:12] 2025-02-20 01:41:51,391 | INFO     | job summary report
[2025-02-20 02:42:12] 2025-02-20 01:41:51,392 | INFO     | --------------------------------------------------
[2025-02-20 02:42:12] 2025-02-20 01:41:51,392 | INFO     | PanDA job id: 6512117402
[2025-02-20 02:42:12] 2025-02-20 01:41:51,392 | INFO     | task id: 43162499
[2025-02-20 02:42:12] 2025-02-20 01:41:51,392 | INFO     | errors: (none)
[2025-02-20 02:42:12] 2025-02-20 01:41:51,392 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-20 02:42:12] 2025-02-20 01:41:51,392 | INFO     | pilot state: finished 
[2025-02-20 02:42:12] 2025-02-20 01:41:51,392 | INFO     | transexitcode: 0
[2025-02-20 02:42:12] 2025-02-20 01:41:51,392 | INFO     | exeerrorcode: 0
[2025-02-20 02:42:12] 2025-02-20 01:41:51,392 | INFO     | exeerrordiag: 
[2025-02-20 02:42:12] 2025-02-20 01:41:51,392 | INFO     | exitcode: 0
[2025-02-20 02:42:12] 2025-02-20 01:41:51,392 | INFO     | exitmsg: OK
[2025-02-20 02:42:12] 2025-02-20 01:41:51,393 | INFO     | cpuconsumptiontime: 26355 s
[2025-02-20 02:42:12] 2025-02-20 01:41:51,393 | INFO     | nevents: 400
[2025-02-20 02:42:12] 2025-02-20 01:41:51,393 | INFO     | neventsw: 0
[2025-02-20 02:42:12] 2025-02-20 01:41:51,393 | INFO     | pid: 917984
[2025-02-20 02:42:12] 2025-02-20 01:41:51,393 | INFO     | pgrp: 917984
[2025-02-20 02:42:12] 2025-02-20 01:41:51,393 | INFO     | corecount: 4
[2025-02-20 02:42:12] 2025-02-20 01:41:51,393 | INFO     | event service: False
[2025-02-20 02:42:12] 2025-02-20 01:41:51,393 | INFO     | sizes: {0: 2389043, 1: 2389242, 7: 2389448, 11: 2389476, 7381: 2416597, 7384: 2425560, 7387: 2425744, 7393: 2425914}
[2025-02-20 02:42:12] 2025-02-20 01:41:51,393 | INFO     | --------------------------------------------------
[2025-02-20 02:42:12] 2025-02-20 01:41:51,393 | INFO     | 
[2025-02-20 02:42:12] 2025-02-20 01:41:51,394 | INFO     | executing command: ls -lF /scratch/boinc/var/slot32/slots/0
[2025-02-20 02:42:12] 2025-02-20 01:41:51,424 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-20 02:42:12] 2025-02-20 01:41:51,425 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-20 02:42:12] 2025-02-20 01:41:51,425 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-20 02:42:12] 2025-02-20 01:41:51,425 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-20 02:42:12] 2025-02-20 01:41:51,425 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-20 02:42:12] 2025-02-20 01:41:51,425 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-20 02:42:12] 2025-02-20 01:41:51,425 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-20 02:42:12] 2025-02-20 01:41:51,425 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-20 02:42:12] 2025-02-20 01:41:51,425 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-20 02:42:12] 2025-02-20 01:41:51,425 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-20 02:42:12] 2025-02-20 01:41:51,425 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-20 02:42:12] 2025-02-20 01:41:51,426 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-20 02:42:12] 2025-02-20 01:41:51,426 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-20 02:42:12] 2025-02-20 01:41:51,426 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-20 02:42:12] 2025-02-20 01:41:51,426 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-20 02:42:12] 2025-02-20 01:41:51,426 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-20 02:42:12] 2025-02-20 01:41:51,426 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-20 02:42:12] 2025-02-20 01:41:51,426 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-20 02:42:12] 2025-02-20 01:41:51,426 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-20 02:42:12] 2025-02-20 01:41:51,426 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-20 02:42:12] 2025-02-20 01:41:51,426 | INFO     | job 6512117402 has completed (purged errors)
[2025-02-20 02:42:12] 2025-02-20 01:41:51,427 | INFO     | overall cleanup function is called
[2025-02-20 02:42:12] 2025-02-20 01:41:52,435 | INFO     | --- collectZombieJob: --- 10, [917984]
[2025-02-20 02:42:12] 2025-02-20 01:41:52,436 | INFO     | zombie collector waiting for pid 917984
[2025-02-20 02:42:12] 2025-02-20 01:41:52,436 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-20 02:42:12] 2025-02-20 01:41:52,436 | INFO     | collected zombie processes
[2025-02-20 02:42:12] 2025-02-20 01:41:52,436 | INFO     | will attempt to kill all subprocesses of pid=917984
[2025-02-20 02:42:12] 2025-02-20 01:41:52,758 | INFO     | process IDs to be killed: [917984] (in reverse order)
[2025-02-20 02:42:12] 2025-02-20 01:41:53,037 | WARNING  | found no corresponding commands to process id(s)
[2025-02-20 02:42:12] 2025-02-20 01:41:53,037 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-20 02:42:12] 2025-02-20 01:41:53,106 | INFO     | did not find any defunct processes belonging to 917984
[2025-02-20 02:42:12] 2025-02-20 01:41:53,168 | INFO     | did not find any defunct processes belonging to 917984
[2025-02-20 02:42:12] 2025-02-20 01:41:53,169 | INFO     | ready for new job
[2025-02-20 02:42:12] 2025-02-20 01:41:53,169 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-20 02:42:12] 2025-02-20 01:41:53,171 | INFO     | **************************************
[2025-02-20 02:42:12] 2025-02-20 01:41:53,171 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-20 02:42:12] 2025-02-20 01:41:53,171 | INFO     | **************************************
[2025-02-20 02:42:12] 2025-02-20 01:41:53,171 | INFO     | 
[2025-02-20 02:42:12] 2025-02-20 01:41:53,184 | INFO     | architecture information:
[2025-02-20 02:42:12] 2025-02-20 01:41:53,184 | INFO     | executing command: cat /etc/os-release
[2025-02-20 02:42:12] 2025-02-20 01:41:53,210 | INFO     | cat /etc/os-release:
[2025-02-20 02:42:12] NAME="CentOS Linux"
[2025-02-20 02:42:12] VERSION="7 (Core)"
[2025-02-20 02:42:12] ID="centos"
[2025-02-20 02:42:12] ID_LIKE="rhel fedora"
[2025-02-20 02:42:12] VERSION_ID="7"
[2025-02-20 02:42:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-20 02:42:12] ANSI_COLOR="0;31"
[2025-02-20 02:42:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-20 02:42:12] HOME_URL="https://www.centos.org/"
[2025-02-20 02:42:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-20 02:42:12] 
[2025-02-20 02:42:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-20 02:42:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-20 02:42:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-20 02:42:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-20 02:42:12] 
[2025-02-20 02:42:12] 2025-02-20 01:41:53,211 | INFO     | **************************************
[2025-02-20 02:42:12] 2025-02-20 01:41:53,713 | INFO     | executing command: df -mP /scratch/boinc/var/slot32/slots/0
[2025-02-20 02:42:12] 2025-02-20 01:41:53,740 | INFO     | sufficient remaining disk space (3293778542592 B)
[2025-02-20 02:42:12] 2025-02-20 01:41:53,741 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-20 02:42:12] 2025-02-20 01:41:53,741 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-20 02:42:12] 2025-02-20 01:41:53,777 | INFO     | all job control threads have been joined
[2025-02-20 02:42:12] 2025-02-20 01:41:53,839 | INFO     | PID=908248 has CPU usage=10.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-02-20 02:42:12] 2025-02-20 01:41:53,840 | INFO     | .. there are 30 such processes running
[2025-02-20 02:42:12] 2025-02-20 01:41:53,840 | INFO     | found 0 job(s) in 20 queues
[2025-02-20 02:42:12] 2025-02-20 01:41:53,840 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-20 02:42:12] 2025-02-20 01:41:53,840 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-20 02:42:12] 2025-02-20 01:41:54,155 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-20 02:42:12] 2025-02-20 01:41:54,156 | INFO     | aborting loop
[2025-02-20 02:42:12] 2025-02-20 01:41:54,466 | INFO     | all payload control threads have been joined
[2025-02-20 02:42:12] 2025-02-20 01:41:54,487 | INFO     | all data control threads have been joined
[2025-02-20 02:42:12] 2025-02-20 01:41:54,752 | INFO     | [job] retrieve thread has finished
[2025-02-20 02:42:12] 2025-02-20 01:41:54,783 | INFO     | [job] control thread has finished
[2025-02-20 02:42:12] 2025-02-20 01:41:54,829 | INFO     | [payload] failed_post thread has finished
[2025-02-20 02:42:12] 2025-02-20 01:41:54,844 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-20 02:42:12] 2025-02-20 01:41:54,893 | INFO     | [job] create_data_payload thread has finished
[2025-02-20 02:42:12] 2025-02-20 01:41:55,012 | INFO     | [job] validate thread has finished
[2025-02-20 02:42:12] 2025-02-20 01:41:55,033 | INFO     | [payload] validate_post thread has finished
[2025-02-20 02:42:12] 2025-02-20 01:41:55,093 | INFO     | [payload] execute_payloads thread has finished
[2025-02-20 02:42:12] 2025-02-20 01:41:55,161 | INFO     | [job] job monitor thread has finished
[2025-02-20 02:42:12] 2025-02-20 01:41:55,351 | INFO     | [payload] validate_pre thread has finished
[2025-02-20 02:42:12] 2025-02-20 01:41:55,471 | INFO     | [payload] control thread has finished
[2025-02-20 02:42:12] 2025-02-20 01:41:55,492 | INFO     | [data] control thread has finished
[2025-02-20 02:42:12] 2025-02-20 01:41:55,580 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-20 02:42:12] 2025-02-20 01:41:55,821 | INFO     | [data] copytool_in thread has finished
[2025-02-20 02:42:12] 2025-02-20 01:41:56,400 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-20 02:42:12] 2025-02-20 01:41:56,853 | INFO     | [data] copytool_out thread has finished
[2025-02-20 02:42:12] 2025-02-20 01:41:57,406 | INFO     | [job] queue monitor thread has finished
[2025-02-20 02:42:12] 2025-02-20 01:41:59,586 | INFO     | [data] queue_monitor thread has finished
[2025-02-20 02:42:12] 2025-02-20 01:42:04,378 | INFO     | job.realtimelogging is not enabled
[2025-02-20 02:42:12] 2025-02-20 01:42:05,383 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-20 02:42:12] 2025-02-20 01:42:07,327 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22453035243328)>', '<ExcThread(monitor, started 22452799239936)>']
[2025-02-20 02:42:12] 2025-02-20 01:42:07,911 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-20 02:42:12] 2025-02-20 01:42:07,912 | INFO     | [monitor] control thread has ended
[2025-02-20 02:42:12] 2025-02-20 01:42:12,351 | INFO     | all workflow threads have been joined
[2025-02-20 02:42:12] 2025-02-20 01:42:12,352 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-20 02:42:12] 2025-02-20 01:42:12,352 | INFO     | traces error code: 0
[2025-02-20 02:42:12] 2025-02-20 01:42:12,352 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-20 02:42:12] 2025-02-20 01:42:12,538 [wrapper] ==== pilot stdout END ====
[2025-02-20 02:42:12] 2025-02-20 01:42:12,542 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-20 02:42:12] 2025-02-20 01:42:12,546 [wrapper] pilotpid: 908248
[2025-02-20 02:42:12] 2025-02-20 01:42:12,550 [wrapper] Pilot exit status: 0
[2025-02-20 02:42:12] 2025-02-20 01:42:12,565 [wrapper] pandaids: 6512117402
[2025-02-20 02:42:12] 2025-02-20 01:42:12,703 [wrapper] cleanup supervisor_pilot 1487756 908249
[2025-02-20 02:42:12] 2025-02-20 01:42:12,709 [wrapper] Test setup, not cleaning
[2025-02-20 02:42:12] 2025-02-20 01:42:12,718 [wrapper] apfmon messages muted
[2025-02-20 02:42:12] 2025-02-20 01:42:12,722 [wrapper] ==== wrapper stdout END ====
[2025-02-20 02:42:12] 2025-02-20 01:42:12,726 [wrapper] ==== wrapper stderr END ====
[2025-02-20 02:42:12]  *** Error codes and diagnostics ***
[2025-02-20 02:42:12]     "exeErrorCode": 0,
[2025-02-20 02:42:12]     "exeErrorDiag": "",
[2025-02-20 02:42:12]     "pilotErrorCode": 0,
[2025-02-20 02:42:12]     "pilotErrorDiag": "",
[2025-02-20 02:42:12]  *** Listing of results directory ***
[2025-02-20 02:42:12] total 305484
[2025-02-20 02:42:12] -rwx------ 1 boinc boinc     34924 Feb 13 11:22 runpilot2-wrapper.sh
[2025-02-20 02:42:12] -rw-r--r-- 1 boinc boinc      5118 Feb 13 11:22 queuedata.json
[2025-02-20 02:42:12] -rw-r--r-- 1 boinc boinc    491065 Feb 13 11:22 pilot3.tar.gz
[2025-02-20 02:42:12] -rw-r--r-- 1 boinc boinc       100 Feb 20 00:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-20 02:42:12] -rwxr-xr-x 1 boinc boinc      7986 Feb 20 00:38 run_atlas
[2025-02-20 02:42:12] -rw-r--r-- 1 boinc boinc       105 Feb 20 00:38 job.xml
[2025-02-20 02:42:12] -rw-r--r-- 2 boinc boinc 181075529 Feb 20 00:38 EVNT.43162497._000035.pool.root.1
[2025-02-20 02:42:12] -rw-r--r-- 1 boinc boinc      6677 Feb 20 00:38 init_data.xml
[2025-02-20 02:42:12] drwxrwx--x 2 boinc boinc      4096 Feb 20 00:38 shared
[2025-02-20 02:42:12] -rw-r--r-- 2 boinc boinc    503466 Feb 20 00:38 input.tar.gz
[2025-02-20 02:42:12] -rw-r--r-- 2 boinc boinc     17569 Feb 20 00:38 start_atlas.sh
[2025-02-20 02:42:12] -rw-r--r-- 1 boinc boinc         0 Feb 20 00:38 boinc_lockfile
[2025-02-20 02:42:12] -rw-r--r-- 1 boinc boinc      2460 Feb 20 00:38 pandaJob.out
[2025-02-20 02:42:12] -rw------- 1 boinc boinc       424 Feb 20 00:38 setup.sh.local
[2025-02-20 02:42:12] -rw------- 1 boinc boinc    985858 Feb 20 00:38 agis_schedconf.cvmfs.json
[2025-02-20 02:42:12] -rw------- 1 boinc boinc   1586690 Feb 20 00:38 agis_ddmendpoints.agis.ALL.json
[2025-02-20 02:42:12] drwx------ 4 boinc boinc      4096 Feb 20 00:38 pilot3
[2025-02-20 02:42:12] -rw------- 1 boinc boinc 125863022 Feb 20 02:41 HITS.43162499._000945.pool.root.1
[2025-02-20 02:42:12] -rw------- 1 boinc boinc        95 Feb 20 02:41 pilot_heartbeat.json
[2025-02-20 02:42:12] -rw-r--r-- 1 boinc boinc       529 Feb 20 02:41 boinc_task_state.xml
[2025-02-20 02:42:12] -rw------- 1 boinc boinc      1025 Feb 20 02:41 memory_monitor_summary.json
[2025-02-20 02:42:12] -rw------- 1 boinc boinc    284087 Feb 20 02:41 log.43162499._000945.job.log.tgz.1
[2025-02-20 02:42:12] -rw------- 1 boinc boinc      7690 Feb 20 02:41 heartbeat.json
[2025-02-20 02:42:12] -rw-r--r-- 1 boinc boinc        27 Feb 20 02:42 wrapper_checkpoint.txt
[2025-02-20 02:42:12] -rw-r--r-- 1 boinc boinc      8192 Feb 20 02:42 boinc_mmap_file
[2025-02-20 02:42:12] -rw------- 1 boinc boinc      4693 Feb 20 02:42 pilotlog.txt
[2025-02-20 02:42:12] -rw------- 1 boinc boinc    749123 Feb 20 02:42 log.43162499._000945.job.log.1
[2025-02-20 02:42:12] -rw------- 1 boinc boinc       357 Feb 20 02:42 output.list
[2025-02-20 02:42:12] -rw-r--r-- 1 boinc boinc       620 Feb 20 02:42 runtime_log
[2025-02-20 02:42:12] -rw------- 1 boinc boinc   1054720 Feb 20 02:42 result.tar.gz
[2025-02-20 02:42:12] -rw------- 1 boinc boinc       661 Feb 20 02:42 t0zNDmbXl26nsSi4ap6QjLDmwznN0nGgGQJmkKkKDm3WaKDmabEiQo.diag
[2025-02-20 02:42:12] -rw-r--r-- 1 boinc boinc     11423 Feb 20 02:42 runtime_log.err
[2025-02-20 02:42:12] -rw-r--r-- 1 boinc boinc     21439 Feb 20 02:42 stderr.txt
[2025-02-20 02:42:12] HITS file was successfully produced:
[2025-02-20 02:42:12] -rw------- 1 boinc boinc 125863022 Feb 20 02:41 shared/HITS.pool.root.1
[2025-02-20 02:42:12]  *** Contents of shared directory: ***
[2025-02-20 02:42:12] total 301300
[2025-02-20 02:42:12] -rw-r--r-- 2 boinc boinc 181075529 Feb 20 00:38 ATLAS.root_0
[2025-02-20 02:42:12] -rw-r--r-- 2 boinc boinc    503466 Feb 20 00:38 input.tar.gz
[2025-02-20 02:42:12] -rw-r--r-- 2 boinc boinc     17569 Feb 20 00:38 start_atlas.sh
[2025-02-20 02:42:12] -rw------- 1 boinc boinc 125863022 Feb 20 02:41 HITS.pool.root.1
[2025-02-20 02:42:12] -rw------- 1 boinc boinc   1054720 Feb 20 02:42 result.tar.gz
02:42:14 (904234): run_atlas exited; CPU time 26192.915146
02:42:14 (904234): called boinc_finish(0)

</stderr_txt>
]]>

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