Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:57:37 (9752): wrapper (7.7.26015): starting
14:57:37 (9752): wrapper: running run_atlas (--nthreads 8)
[2024-09-25 14:57:37] Arguments: --nthreads 8
[2024-09-25 14:57:37] Threads: 8
[2024-09-25 14:57:37] Checking for CVMFS
[2024-09-25 14:57:37] Probing /cvmfs/atlas.cern.ch... OK
[2024-09-25 14:57:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-09-25 14:57:38] Running cvmfs_config stat atlas.cern.ch
[2024-09-25 14:57:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-09-25 14:57:38] 2.11.2.0 2871 86253 120508 137650 1 58 17744605 20275200 1 130560 0 43728430 99.959 13474049 35739 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2024-09-25 14:57:38] CVMFS is ok
[2024-09-25 14:57:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-09-25 14:57:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-09-25 14:57:38] Further information can be found at the LHC@home message board.
[2024-09-25 14:57:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-09-25 14:57:38] Checking for apptainer binary...
[2024-09-25 14:57:38] Using apptainer found in PATH at /usr/bin/apptainer
[2024-09-25 14:57:38] Running /usr/bin/apptainer --version
[2024-09-25 14:57:38] apptainer version 1.3.2-1.el7
[2024-09-25 14:57:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-09-25 14:57:39] c-204-34.aglt2.org
[2024-09-25 14:57:39] apptainer works
[2024-09-25 14:57:39] Set ATHENA_PROC_NUMBER=8
[2024-09-25 14:57:39] Set ATHENA_CORE_NUMBER=8
[2024-09-25 14:57:39] Starting ATLAS job with PandaID=6346153591
[2024-09-25 14:57:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-09-25 16:35:08]  *** The last 200 lines of the pilot log: ***
[2024-09-25 16:35:08]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-09-25 16:35:08]  is_tar=False
[2024-09-25 16:35:08]  lfn=log.41078623._030298.job.log.tgz.1
[2024-09-25 16:35:08]  mtime=0
[2024-09-25 16:35:08]  protocol_id=None
[2024-09-25 16:35:08]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-09-25 16:35:08]  replicas=None
[2024-09-25 16:35:08]  scope=mc23_13p6TeV
[2024-09-25 16:35:08]  status=None
[2024-09-25 16:35:08]  status_code=0
[2024-09-25 16:35:08]  storage_token=
[2024-09-25 16:35:08]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6346153591/log.41078623._030298.job.log.tgz.1
[2024-09-25 16:35:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fa/b4/log.41078623._030298.job.log.tgz.1
[2024-09-25 16:35:08]  workdir=None
[2024-09-25 16:35:08] ]
[2024-09-25 16:35:08] 2024-09-25 20:34:43,502 | INFO     | transferring file log.41078623._030298.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6346153591/log.41078623._030298.job.log.tgz.1 to /tmp/boinchome/slots/
[2024-09-25 16:35:08] 2024-09-25 20:34:43,502 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6346153591/log.41078623._030298.job.log.tgz.1 /tmp/boinchome/slots/0/log.41078623._030298.job
[2024-09-25 16:35:08] 2024-09-25 20:34:43,530 | INFO     | adding to output.list: log.41078623._030298.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fa/b4/log.41078623._030298.job.log.tg
[2024-09-25 16:35:08] 2024-09-25 20:34:43,531 | INFO     | summary of transferred files:
[2024-09-25 16:35:08] 2024-09-25 20:34:43,531 | INFO     |  -- lfn=log.41078623._030298.job.log.tgz.1, status_code=0, status=transferred
[2024-09-25 16:35:08] 2024-09-25 20:34:43,531 | INFO     | stage-out finished correctly
[2024-09-25 16:35:08] 2024-09-25 20:34:44,024 | INFO     | monitor loop #436: job 0:6346153591 is in state 'finished'
[2024-09-25 16:35:08] 2024-09-25 20:34:44,028 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-09-25 16:35:08] 2024-09-25 20:34:46,529 | INFO     | monitor loop #437: job 0:6346153591 is in state 'finished'
[2024-09-25 16:35:08] 2024-09-25 20:34:46,529 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-09-25 16:35:08] 2024-09-25 20:34:47,094 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-09-25 16:35:08] 2024-09-25 20:34:47,182 | INFO     | job 6346153591 has state=finished
[2024-09-25 16:35:08] 2024-09-25 20:34:47,182 | INFO     | preparing for final server update for job 6346153591 in state='finished'
[2024-09-25 16:35:08] 2024-09-25 20:34:47,247 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2024-09-25 16:35:08] 2024-09-25 20:34:47,247 | INFO     | this job has now completed (state=finished)
[2024-09-25 16:35:08] 2024-09-25 20:34:47,247 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-09-25 16:35:08] 2024-09-25 20:34:47,247 | INFO     | log transfer has been attempted: DONE
[2024-09-25 16:35:08] 2024-09-25 20:34:47,248 | INFO     | job 6346153591 has finished - writing final server update
[2024-09-25 16:35:08] 2024-09-25 20:34:47,248 | INFO     | total number of processed events: 400 (read)
[2024-09-25 16:35:08] 2024-09-25 20:34:47,250 | INFO     | executing command: lscpu
[2024-09-25 16:35:08] 2024-09-25 20:34:47,281 | INFO     | found 8 cores (4 cores per socket, 2 sockets)
[2024-09-25 16:35:08] 2024-09-25 20:34:47,281 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-09-25 16:35:08] 2024-09-25 20:34:47,324 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-09-25 16:35:08] 2024-09-25 20:34:49,032 | INFO     | monitor loop #438: job 0:6346153591 is in state 'finished'
[2024-09-25 16:35:08] 2024-09-25 20:34:49,033 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-09-25 16:35:08] 2024-09-25 20:34:51,546 | INFO     | monitor loop #439: job 0:6346153591 is in state 'finished'
[2024-09-25 16:35:08] 2024-09-25 20:34:51,546 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-09-25 16:35:08] 2024-09-25 20:34:53,001 | INFO     | CPU arch script returned: x86-64-v2
[2024-09-25 16:35:08] 2024-09-25 20:34:53,002 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6346153591/memory_monitor_summary.json (trf name=prmon)
[2024-09-25 16:35:08] 2024-09-25 20:34:53,003 | INFO     | extracted standard info from prmon json
[2024-09-25 16:35:08] 2024-09-25 20:34:53,003 | INFO     | extracted standard memory fields from prmon json
[2024-09-25 16:35:08] 2024-09-25 20:34:53,004 | WARNING  | GPU info not found in prmon json: 'gpu'
[2024-09-25 16:35:08] 2024-09-25 20:34:53,004 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-09-25 16:35:08] 2024-09-25 20:34:53,004 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-09-25 16:35:08] 2024-09-25 20:34:53,008 | INFO     | fitting pss+swap vs Time
[2024-09-25 16:35:08] 2024-09-25 20:34:53,008 | INFO     | model: linear, x: [1727291014.0, 1727291075.0, 1727291136.0, 1727291197.0, 1727291258.0, 1727291319.0, 1727291380.0, 1727291441.0, 1727291502.0, 1727291563.0, 1727
[2024-09-25 16:35:08] 2024-09-25 20:34:53,008 | INFO     | sum of square deviations: 211285822.0
[2024-09-25 16:35:08] 2024-09-25 20:34:53,009 | INFO     | sum of deviations: -3946906667.9999995
[2024-09-25 16:35:08] 2024-09-25 20:34:53,009 | INFO     | mean x: 1727293667.5
[2024-09-25 16:35:08] 2024-09-25 20:34:53,009 | INFO     | mean y: 2553361.409090909
[2024-09-25 16:35:08] 2024-09-25 20:34:53,010 | INFO     | -- intersect: 32269114502.695343
[2024-09-25 16:35:08] 2024-09-25 20:34:53,010 | INFO     | intersect: 32269114502.695343
[2024-09-25 16:35:08] 2024-09-25 20:34:53,010 | INFO     | chi2: 0.15618131603477467
[2024-09-25 16:35:08] 2024-09-25 20:34:53,010 | INFO     | -- intersect: 32269114502.695343
[2024-09-25 16:35:08] 2024-09-25 20:34:53,011 | INFO     | current memory leak: -18.68 B/s (using 88 data points, chi2=0.16)
[2024-09-25 16:35:08] 2024-09-25 20:34:53,011 | INFO     | ..............................
[2024-09-25 16:35:08] 2024-09-25 20:34:53,011 | INFO     | . Timing measurements:
[2024-09-25 16:35:08] 2024-09-25 20:34:53,011 | INFO     | . get job = 0 s
[2024-09-25 16:35:08] 2024-09-25 20:34:53,012 | INFO     | . initial setup = 2 s
[2024-09-25 16:35:08] 2024-09-25 20:34:53,012 | INFO     | . payload setup = 9 s
[2024-09-25 16:35:08] 2024-09-25 20:34:53,012 | INFO     | . stage-in = 0 s
[2024-09-25 16:35:08] 2024-09-25 20:34:53,012 | INFO     | . payload execution = 5774 s
[2024-09-25 16:35:08] 2024-09-25 20:34:53,012 | INFO     | . stage-out = 0 s
[2024-09-25 16:35:08] 2024-09-25 20:34:53,012 | INFO     | . log creation = 0 s
[2024-09-25 16:35:08] 2024-09-25 20:34:53,012 | INFO     | ..............................
[2024-09-25 16:35:08] 2024-09-25 20:34:53,344 | INFO     | 
[2024-09-25 16:35:08] 2024-09-25 20:34:53,344 | INFO     | job summary report
[2024-09-25 16:35:08] 2024-09-25 20:34:53,344 | INFO     | --------------------------------------------------
[2024-09-25 16:35:08] 2024-09-25 20:34:53,345 | INFO     | PanDA job id: 6346153591
[2024-09-25 16:35:08] 2024-09-25 20:34:53,345 | INFO     | task id: 41078623
[2024-09-25 16:35:08] 2024-09-25 20:34:53,345 | INFO     | errors: (none)
[2024-09-25 16:35:08] 2024-09-25 20:34:53,345 | INFO     | status: LOG_TRANSFER = DONE 
[2024-09-25 16:35:08] 2024-09-25 20:34:53,345 | INFO     | pilot state: finished 
[2024-09-25 16:35:08] 2024-09-25 20:34:53,345 | INFO     | transexitcode: 0
[2024-09-25 16:35:08] 2024-09-25 20:34:53,346 | INFO     | exeerrorcode: 0
[2024-09-25 16:35:08] 2024-09-25 20:34:53,346 | INFO     | exeerrordiag: 
[2024-09-25 16:35:08] 2024-09-25 20:34:53,346 | INFO     | exitcode: 0
[2024-09-25 16:35:08] 2024-09-25 20:34:53,346 | INFO     | exitmsg: OK
[2024-09-25 16:35:08] 2024-09-25 20:34:53,346 | INFO     | cpuconsumptiontime: 41415 s
[2024-09-25 16:35:08] 2024-09-25 20:34:53,347 | INFO     | nevents: 400
[2024-09-25 16:35:08] 2024-09-25 20:34:53,347 | INFO     | neventsw: 0
[2024-09-25 16:35:08] 2024-09-25 20:34:53,347 | INFO     | pid: 20099
[2024-09-25 16:35:08] 2024-09-25 20:34:53,347 | INFO     | pgrp: 20099
[2024-09-25 16:35:08] 2024-09-25 20:34:53,347 | INFO     | corecount: 8
[2024-09-25 16:35:08] 2024-09-25 20:34:53,347 | INFO     | event service: False
[2024-09-25 16:35:08] 2024-09-25 20:34:53,348 | INFO     | sizes: {0: 2439989, 1: 2440244, 7: 2440450, 12: 2440478, 5787: 2466903, 5789: 2475863, 5792: 2476047, 5798: 2476217}
[2024-09-25 16:35:08] 2024-09-25 20:34:53,348 | INFO     | --------------------------------------------------
[2024-09-25 16:35:08] 2024-09-25 20:34:53,348 | INFO     | 
[2024-09-25 16:35:08] 2024-09-25 20:34:53,348 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2024-09-25 16:35:08] 2024-09-25 20:34:53,381 | INFO     | queue jobs had 0 job(s) [purged]
[2024-09-25 16:35:08] 2024-09-25 20:34:53,382 | INFO     | queue payloads had 0 job(s) [purged]
[2024-09-25 16:35:08] 2024-09-25 20:34:53,382 | INFO     | queue data_in had 0 job(s) [purged]
[2024-09-25 16:35:08] 2024-09-25 20:34:53,382 | INFO     | queue data_out had 0 job(s) [purged]
[2024-09-25 16:35:08] 2024-09-25 20:34:53,382 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-09-25 16:35:08] 2024-09-25 20:34:53,383 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-09-25 16:35:08] 2024-09-25 20:34:53,383 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-09-25 16:35:08] 2024-09-25 20:34:53,383 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-09-25 16:35:08] 2024-09-25 20:34:53,383 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-09-25 16:35:08] 2024-09-25 20:34:53,383 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-09-25 16:35:08] 2024-09-25 20:34:53,384 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-09-25 16:35:08] 2024-09-25 20:34:53,384 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-09-25 16:35:08] 2024-09-25 20:34:53,384 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-09-25 16:35:08] 2024-09-25 20:34:53,384 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-09-25 16:35:08] 2024-09-25 20:34:53,384 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-09-25 16:35:08] 2024-09-25 20:34:53,384 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-09-25 16:35:08] 2024-09-25 20:34:53,385 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-09-25 16:35:08] 2024-09-25 20:34:53,385 | INFO     | queue completed_jobids has 1 job(s)
[2024-09-25 16:35:08] 2024-09-25 20:34:53,385 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-09-25 16:35:08] 2024-09-25 20:34:53,385 | INFO     | queue messages had 0 job(s) [purged]
[2024-09-25 16:35:08] 2024-09-25 20:34:53,385 | INFO     | job 6346153591 has completed (purged errors)
[2024-09-25 16:35:08] 2024-09-25 20:34:53,386 | INFO     | overall cleanup function is called
[2024-09-25 16:35:08] 2024-09-25 20:34:54,394 | INFO     | --- collectZombieJob: --- 10, [20099]
[2024-09-25 16:35:08] 2024-09-25 20:34:54,394 | INFO     | zombie collector waiting for pid 20099
[2024-09-25 16:35:08] 2024-09-25 20:34:54,399 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-09-25 16:35:08] 2024-09-25 20:34:54,400 | INFO     | collected zombie processes
[2024-09-25 16:35:08] 2024-09-25 20:34:54,400 | INFO     | will  attempt to kill all subprocesses of pid=20099
[2024-09-25 16:35:08] 2024-09-25 20:34:54,476 | INFO     | process IDs to be killed: [20099] (in reverse order)
[2024-09-25 16:35:08] 2024-09-25 20:34:54,539 | WARNING  | found no corresponding commands to process id(s)
[2024-09-25 16:35:08] 2024-09-25 20:34:54,540 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-09-25 16:35:08] 2024-09-25 20:34:54,543 | INFO     | did not find any defunct processes belonging to 20099
[2024-09-25 16:35:08] 2024-09-25 20:34:54,547 | INFO     | did not find any defunct processes belonging to 20099
[2024-09-25 16:35:08] 2024-09-25 20:34:54,547 | INFO     | ready for new job
[2024-09-25 16:35:08] 2024-09-25 20:34:54,547 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-09-25 16:35:08] 2024-09-25 20:34:54,549 | INFO     | **************************************
[2024-09-25 16:35:08] 2024-09-25 20:34:54,549 | INFO     | ***  PanDA Pilot version 3.8.1.66  ***
[2024-09-25 16:35:08] 2024-09-25 20:34:54,549 | INFO     | **************************************
[2024-09-25 16:35:08] 2024-09-25 20:34:54,550 | INFO     | 
[2024-09-25 16:35:08] 2024-09-25 20:34:54,550 | INFO     | architecture information:
[2024-09-25 16:35:08] 2024-09-25 20:34:54,551 | INFO     | executing command: cat /etc/os-release
[2024-09-25 16:35:08] 2024-09-25 20:34:54,573 | INFO     | cat /etc/os-release:
[2024-09-25 16:35:08] NAME="CentOS Linux"
[2024-09-25 16:35:08] VERSION="7 (Core)"
[2024-09-25 16:35:08] ID="centos"
[2024-09-25 16:35:08] ID_LIKE="rhel fedora"
[2024-09-25 16:35:08] VERSION_ID="7"
[2024-09-25 16:35:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-09-25 16:35:08] ANSI_COLOR="0;31"
[2024-09-25 16:35:08] CPE_NAME="cpe:/o:centos:centos:7"
[2024-09-25 16:35:08] HOME_URL="https://www.centos.org/"
[2024-09-25 16:35:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-09-25 16:35:08] 
[2024-09-25 16:35:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-09-25 16:35:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-09-25 16:35:08] REDHAT_SUPPORT_PRODUCT="centos"
[2024-09-25 16:35:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-09-25 16:35:08] 
[2024-09-25 16:35:08] 2024-09-25 20:34:54,574 | INFO     | **************************************
[2024-09-25 16:35:08] 2024-09-25 20:34:55,077 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2024-09-25 16:35:08] 2024-09-25 20:34:55,101 | INFO     | sufficient remaining disk space (18222153728 B)
[2024-09-25 16:35:08] 2024-09-25 20:34:55,102 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-09-25 16:35:08] 2024-09-25 20:34:55,102 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-09-25 16:35:08] 2024-09-25 20:34:55,102 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-09-25 16:35:08] 2024-09-25 20:34:55,103 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-09-25 16:35:08] 2024-09-25 20:34:55,103 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-09-25 16:35:08] 2024-09-25 20:34:55,103 | INFO     | aborting loop
[2024-09-25 16:35:08] 2024-09-25 20:34:55,159 | INFO     | all payload control threads have been joined
[2024-09-25 16:35:08] 2024-09-25 20:34:55,284 | INFO     | all data control threads have been joined
[2024-09-25 16:35:08] 2024-09-25 20:34:55,828 | INFO     | found 0 job(s) in 20 queues
[2024-09-25 16:35:08] 2024-09-25 20:34:55,828 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-09-25 16:35:08] 2024-09-25 20:34:55,828 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-09-25 16:35:08] 2024-09-25 20:34:56,107 | INFO     | [job] retrieve thread has finished
[2024-09-25 16:35:08] 2024-09-25 20:34:56,108 | INFO     | [job] queue monitor thread has finished
[2024-09-25 16:35:08] 2024-09-25 20:34:56,109 | INFO     | [job] job monitor thread has finished
[2024-09-25 16:35:08] 2024-09-25 20:34:56,132 | INFO     | [payload] execute_payloads thread has finished
[2024-09-25 16:35:08] 2024-09-25 20:34:56,164 | INFO     | [payload] control thread has finished
[2024-09-25 16:35:08] 2024-09-25 20:34:56,255 | INFO     | [job] create_data_payload thread has finished
[2024-09-25 16:35:08] 2024-09-25 20:34:56,270 | INFO     | [payload] run_realtimelog thread has finished
[2024-09-25 16:35:08] 2024-09-25 20:34:56,290 | INFO     | [data] control thread has finished
[2024-09-25 16:35:08] 2024-09-25 20:34:56,469 | INFO     | [payload] validate_pre thread has finished
[2024-09-25 16:35:08] 2024-09-25 20:34:56,556 | INFO     | all job control threads have been joined
[2024-09-25 16:35:08] 2024-09-25 20:34:56,718 | INFO     | [data] copytool_in thread has finished
[2024-09-25 16:35:08] 2024-09-25 20:34:57,108 | INFO     | [data] copytool_out thread has finished
[2024-09-25 16:35:08] 2024-09-25 20:34:57,119 | INFO     | [payload] validate_post thread has finished
[2024-09-25 16:35:08] 2024-09-25 20:34:57,275 | INFO     | [payload] failed_post thread has finished
[2024-09-25 16:35:08] 2024-09-25 20:34:57,502 | INFO     | [job] validate thread has finished
[2024-09-25 16:35:08] 2024-09-25 20:34:57,561 | INFO     | [job] control thread has finished
[2024-09-25 16:35:08] 2024-09-25 20:34:57,692 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-09-25 16:35:08] 2024-09-25 20:35:01,698 | INFO     | [data] queue_monitor thread has finished
[2024-09-25 16:35:08] 2024-09-25 20:35:02,874 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140603744577344)>', '<ExcThread(monitor, started 140602784077568)>']
[2024-09-25 16:35:08] 2024-09-25 20:35:03,868 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-09-25 16:35:08] 2024-09-25 20:35:03,868 | INFO     | [monitor] control thread has ended
[2024-09-25 16:35:08] 2024-09-25 20:35:07,884 | INFO     | all workflow threads have been joined
[2024-09-25 16:35:08] 2024-09-25 20:35:07,884 | INFO     | end of generic workflow (traces error code: 0)
[2024-09-25 16:35:08] 2024-09-25 20:35:07,884 | INFO     | traces error code: 0
[2024-09-25 16:35:08] 2024-09-25 20:35:07,885 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-09-25 16:35:08] 2024-09-25 20:35:07,985 [wrapper] ==== pilot stdout END ====
[2024-09-25 16:35:08] 2024-09-25 20:35:07,991 [wrapper] ==== wrapper stdout RESUME ====
[2024-09-25 16:35:08] 2024-09-25 20:35:07,995 [wrapper] pilotpid: 13731
[2024-09-25 16:35:08] 2024-09-25 20:35:08,000 [wrapper] Pilot exit status: 0
[2024-09-25 16:35:08] 2024-09-25 20:35:08,019 [wrapper] pandaids: 6346153591
[2024-09-25 16:35:08] 2024-09-25 20:35:08,063 [wrapper] cleanup supervisor_pilot 22012 13732
[2024-09-25 16:35:08] 2024-09-25 20:35:08,068 [wrapper] Test setup, not cleaning
[2024-09-25 16:35:08] 2024-09-25 20:35:08,072 [wrapper] ==== wrapper stdout END ====
[2024-09-25 16:35:08] 2024-09-25 20:35:08,077 [wrapper] ==== wrapper stderr END ====
[2024-09-25 16:35:08] 2024-09-25 20:35:08,086 [wrapper] apfmon messages muted
[2024-09-25 16:35:08]  *** Error codes and diagnostics ***
[2024-09-25 16:35:08]     "exeErrorCode": 0,
[2024-09-25 16:35:08]     "exeErrorDiag": "",
[2024-09-25 16:35:08]     "pilotErrorCode": 0,
[2024-09-25 16:35:08]     "pilotErrorDiag": "",
[2024-09-25 16:35:08]  *** Listing of results directory ***
[2024-09-25 16:35:08] total 597940
[2024-09-25 16:35:08] -rw-r--r-- 1 boincer umatlas    482533 Sep 25 13:19 pilot3.tar.gz
[2024-09-25 16:35:08] -rw-r--r-- 1 boincer umatlas      5655 Sep 25 13:28 queuedata.json
[2024-09-25 16:35:08] -rwx------ 1 boincer umatlas     33814 Sep 25 13:29 runpilot2-wrapper.sh
[2024-09-25 16:35:08] -rw-r--r-- 1 boincer umatlas       100 Sep 25 14:57 wrapper_26015_x86_64-pc-linux-gnu
[2024-09-25 16:35:08] -rwxr-xr-x 1 boincer umatlas      7986 Sep 25 14:57 run_atlas
[2024-09-25 16:35:08] -rw-r--r-- 1 boincer umatlas       105 Sep 25 14:57 job.xml
[2024-09-25 16:35:08] -rw-r--r-- 2 boincer umatlas 441280978 Sep 25 14:57 EVNT.41078621._001027.pool.root.1
[2024-09-25 16:35:08] -rw-r--r-- 2 boincer umatlas     17539 Sep 25 14:57 start_atlas.sh
[2024-09-25 16:35:08] drwxrwx--x 2 boincer umatlas      4096 Sep 25 14:57 shared
[2024-09-25 16:35:08] -rw-r--r-- 2 boincer umatlas    495989 Sep 25 14:57 input.tar.gz
[2024-09-25 16:35:08] -rw-r--r-- 1 boincer umatlas         0 Sep 25 14:57 boinc_lockfile
[2024-09-25 16:35:08] -rw-r--r-- 1 boincer umatlas      2562 Sep 25 14:57 pandaJob.out
[2024-09-25 16:35:08] -rw------- 1 boincer umatlas       462 Sep 25 14:57 setup.sh.local
[2024-09-25 16:35:08] -rw------- 1 boincer umatlas   1018497 Sep 25 14:57 agis_schedconf.cvmfs.json
[2024-09-25 16:35:08] -rw------- 1 boincer umatlas   1618603 Sep 25 14:57 agis_ddmendpoints.agis.ALL.json
[2024-09-25 16:35:08] drwx------ 4 boincer umatlas      4096 Sep 25 14:57 pilot3
[2024-09-25 16:35:08] -rw-r--r-- 1 boincer umatlas      5905 Sep 25 16:30 init_data.xml
[2024-09-25 16:35:08] -rw------- 1 boincer umatlas 165487014 Sep 25 16:34 HITS.41078623._030298.pool.root.1
[2024-09-25 16:35:08] -rw------- 1 boincer umatlas        95 Sep 25 16:34 pilot_heartbeat.json
[2024-09-25 16:35:08] -rw-r--r-- 1 boincer umatlas       530 Sep 25 16:34 boinc_task_state.xml
[2024-09-25 16:35:08] -rw------- 1 boincer umatlas      1047 Sep 25 16:34 memory_monitor_summary.json
[2024-09-25 16:35:08] -rw------- 1 boincer umatlas    306048 Sep 25 16:34 log.41078623._030298.job.log.tgz.1
[2024-09-25 16:35:08] -rw-r--r-- 1 boincer umatlas      8192 Sep 25 16:34 boinc_mmap_file
[2024-09-25 16:35:08] -rw-r--r-- 1 boincer umatlas        27 Sep 25 16:34 wrapper_checkpoint.txt
[2024-09-25 16:35:08] -rw------- 1 boincer umatlas      7758 Sep 25 16:34 heartbeat.json
[2024-09-25 16:35:08] -rw------- 1 boincer umatlas      4215 Sep 25 16:35 pilotlog.txt
[2024-09-25 16:35:08] -rw------- 1 boincer umatlas    524419 Sep 25 16:35 log.41078623._030298.job.log.1
[2024-09-25 16:35:08] -rw------- 1 boincer umatlas       357 Sep 25 16:35 output.list
[2024-09-25 16:35:08] -rw-r--r-- 1 boincer umatlas       620 Sep 25 16:35 runtime_log
[2024-09-25 16:35:08] -rw------- 1 boincer umatlas    849920 Sep 25 16:35 result.tar.gz
[2024-09-25 16:35:08] -rw-r--r-- 1 boincer umatlas     11375 Sep 25 16:35 runtime_log.err
[2024-09-25 16:35:08] -rw------- 1 boincer umatlas       646 Sep 25 16:35 jeyLDmw0kD6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmisiKDmj1yWJm.diag
[2024-09-25 16:35:08] -rw-r--r-- 1 boincer umatlas     21530 Sep 25 16:35 stderr.txt
[2024-09-25 16:35:08] HITS file was successfully produced:
[2024-09-25 16:35:08] -rw------- 1 boincer umatlas 165487014 Sep 25 16:34 shared/HITS.pool.root.1
[2024-09-25 16:35:08]  *** Contents of shared directory: ***
[2024-09-25 16:35:08] total 593896
[2024-09-25 16:35:08] -rw-r--r-- 2 boincer umatlas 441280978 Sep 25 14:57 ATLAS.root_0
[2024-09-25 16:35:08] -rw-r--r-- 2 boincer umatlas     17539 Sep 25 14:57 start_atlas.sh
[2024-09-25 16:35:08] -rw-r--r-- 2 boincer umatlas    495989 Sep 25 14:57 input.tar.gz
[2024-09-25 16:35:08] -rw------- 1 boincer umatlas 165487014 Sep 25 16:34 HITS.pool.root.1
[2024-09-25 16:35:08] -rw------- 1 boincer umatlas    849920 Sep 25 16:35 result.tar.gz
16:35:09 (9752): run_atlas exited; CPU time 41283.730241
16:35:09 (9752): called boinc_finish(0)

</stderr_txt>
]]>

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