Stderr output

<core_client_version>7.16.5</core_client_version>
<![CDATA[
<stderr_txt>
2024-09-24 07:25:17 (8852): Detected: vboxwrapper 26206
2024-09-24 07:25:17 (8852): Detected: BOINC client v7.16.5
2024-09-24 07:25:18 (8852): Detected: VirtualBox VboxManage Interface (Version: 5.2.44)
2024-09-24 07:25:18 (8852): Successfully copied 'init_data.xml' to the shared directory.
2024-09-24 07:25:19 (8852): Create VM. (boinc_3618ae12ad691790, slot#2)
2024-09-24 07:25:19 (8852): Setting Memory Size for VM. (4400MB)
2024-09-24 07:25:19 (8852): Setting CPU Count for VM. (4)
2024-09-24 07:25:20 (8852): Setting Chipset Options for VM.
2024-09-24 07:25:20 (8852): Setting Graphics Controller Options for VM.
2024-09-24 07:25:20 (8852): Setting Boot Options for VM.
2024-09-24 07:25:20 (8852): Setting Network Configuration for NAT.
2024-09-24 07:25:21 (8852): Enabling VM Network Access.
2024-09-24 07:25:21 (8852): Disabling USB Support for VM.
2024-09-24 07:25:21 (8852): Disabling COM Port Support for VM.
2024-09-24 07:25:21 (8852): Disabling LPT Port Support for VM.
2024-09-24 07:25:22 (8852): Disabling Audio Support for VM.
2024-09-24 07:25:22 (8852): Disabling Clipboard Support for VM.
2024-09-24 07:25:22 (8852): Disabling Drag and Drop Support for VM.
2024-09-24 07:25:22 (8852): Adding storage controller(s) to VM.
2024-09-24 07:25:23 (8852): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-09-24 07:25:23 (8852): Adding VirtualBox Guest Additions to VM.
2024-09-24 07:25:23 (8852): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-09-24 07:25:24 (8852): forwarding host port 65343 to guest port 80
2024-09-24 07:25:24 (8852): Enabling remote desktop for VM.
2024-09-24 07:25:24 (8852): Enabling shared directory for VM.
2024-09-24 07:25:25 (8852): Starting VM using VBoxManage interface. (boinc_3618ae12ad691790, slot#2)
2024-09-24 07:25:29 (8852): Successfully started VM. (PID = '20932')
2024-09-24 07:25:29 (8852): Reporting VM Process ID to BOINC.
2024-09-24 07:25:29 (8852): Guest Log: BIOS: VirtualBox 5.2.44
2024-09-24 07:25:29 (8852): Guest Log: CPUID EDX: 0x178bfbff
2024-09-24 07:25:29 (8852): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-09-24 07:25:29 (8852): VM state change detected. (old = 'poweredoff', new = 'running')
2024-09-24 07:25:29 (8852): Detected: Web Application Enabled (http://localhost:65343)
2024-09-24 07:25:29 (8852): Detected: Remote Desktop Enabled (localhost:65344)
2024-09-24 07:25:29 (8852): Preference change detected
2024-09-24 07:25:29 (8852): Setting CPU throttle for VM. (100%)
2024-09-24 07:25:30 (8852): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2024-09-24 07:25:31 (8852): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-09-24 07:25:31 (8852): Guest Log: BIOS: Booting from Hard Disk...
2024-09-24 07:25:34 (8852): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-09-24 07:25:34 (8852): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-09-24 07:25:34 (8852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-09-24 07:25:34 (8852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-09-24 07:25:34 (8852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-09-24 07:25:34 (8852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-09-24 07:25:34 (8852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-09-24 07:25:34 (8852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-09-24 07:25:34 (8852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-09-24 07:25:34 (8852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-09-24 07:25:34 (8852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-09-24 07:25:34 (8852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-09-24 07:25:34 (8852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-09-24 07:25:34 (8852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-09-24 07:25:34 (8852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-09-24 07:25:34 (8852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-09-24 07:25:34 (8852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-09-24 07:25:34 (8852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-09-24 07:25:34 (8852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-09-24 07:25:34 (8852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-09-24 07:25:34 (8852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-09-24 07:25:34 (8852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-09-24 07:25:34 (8852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-09-24 07:25:34 (8852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-09-24 07:25:34 (8852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-09-24 07:25:34 (8852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-09-24 07:25:34 (8852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-09-24 07:25:34 (8852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-09-24 07:25:34 (8852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-09-24 07:25:34 (8852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-09-24 07:25:34 (8852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-09-24 07:25:34 (8852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-09-24 07:25:40 (8852): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-09-24 07:25:40 (8852): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-09-24 07:25:46 (8852): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-09-24 07:25:46 (8852): Guest Log: 00:00:00.000186 main     Log opened 2024-09-24T07:25:44.767349000Z
2024-09-24 07:25:46 (8852): Guest Log: 00:00:00.000301 main     OS Product: Linux
2024-09-24 07:25:46 (8852): Guest Log: 00:00:00.000344 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-09-24 07:25:46 (8852): Guest Log: 00:00:00.000376 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-09-24 07:25:46 (8852): Guest Log: 00:00:00.000421 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-09-24 07:25:46 (8852): Guest Log: 00:00:00.000422 main     Process ID: 1297
2024-09-24 07:25:46 (8852): Guest Log: 00:00:00.000423 main     Package type: LINUX_64BITS_GENERIC
2024-09-24 07:25:46 (8852): Guest Log: 00:00:00.001547 main     5.2.32 r132073 started. Verbose level = 0
2024-09-24 07:25:46 (8852): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-09-24 07:25:46 (8852): Guest Log: [INFO] Mounting shared directory
2024-09-24 07:25:46 (8852): Guest Log: [INFO] Checking for init_data.xml
2024-09-24 07:25:49 (8852): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-09-24 07:25:49 (8852): Guest Log: [INFO] Detected branch: prod
2024-09-24 07:25:49 (8852): Guest Log: This is the prod version of the ATLAS job wrapper
2024-09-24 07:25:49 (8852): Guest Log: Copying input files
2024-09-24 07:25:52 (8852): Guest Log: Copied input files into RunAtlas.
2024-09-24 07:25:52 (8852): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-09-24 07:25:52 (8852): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-09-24 07:25:52 (8852): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-09-24 07:25:52 (8852): Guest Log: Further information can be found at the LHC@home message board.
2024-09-24 07:25:56 (8852): Guest Log: 00:00:10.003015 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 212 894 000ns (GuestNow=1 727 151 956 557 121 000 ns GuestLast=1 727 162 744 770 015 000 ns fSetTimeLastLoop=true )
2024-09-24 07:26:04 (8852): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-09-24 07:26:04 (8852): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-09-24 07:26:04 (8852): Guest Log: 2.6.3.0 1574 0 30144 137588 3 1 3117432 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-09-24 07:26:04 (8852): Guest Log: copied the webapp to /var/www
2024-09-24 07:26:04 (8852): Guest Log: ATHENA_PROC_NUMBER=4
2024-09-24 07:26:04 (8852): Guest Log: ATHENA_CORE_NUMBER=4
2024-09-24 07:26:05 (8852): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-09-24 07:26:05 (8852): Guest Log:  *** Starting ATLAS job. (PandaID=6342527076 taskID=41078631) ***
2024-09-24 09:05:33 (8852): Status Report: Elapsed Time: '6000.000000'
2024-09-24 09:05:33 (8852): Status Report: CPU Time: '19264.578125'
2024-09-24 10:15:41 (8852): Guest Log:  *** Job finished ***
2024-09-24 10:15:41 (8852): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-09-24 10:15:41 (8852): Guest Log: 2024-09-24 07:15:30,819 | INFO     | [payload] control thread has finished
2024-09-24 10:15:41 (8852): Guest Log: 2024-09-24 07:15:31,706 | INFO     | [data] copytool_out thread has finished
2024-09-24 10:15:41 (8852): Guest Log: 2024-09-24 07:15:34,566 | INFO     | [data] queue_monitor thread has finished
2024-09-24 10:15:41 (8852): Guest Log: 2024-09-24 07:15:34,906 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140622038406976)>', '<ExcThread(monitor, started 140620987365120)>']
2024-09-24 10:15:41 (8852): Guest Log: 2024-09-24 07:15:35,390 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-09-24 10:15:41 (8852): Guest Log: 2024-09-24 07:15:35,391 | INFO     | [monitor] control thread has ended
2024-09-24 10:15:41 (8852): Guest Log: 2024-09-24 07:15:39,910 | INFO     | all workflow threads have been joined
2024-09-24 10:15:41 (8852): Guest Log: 2024-09-24 07:15:39,911 | INFO     | end of generic workflow (traces error code: 0)
2024-09-24 10:15:41 (8852): Guest Log: 2024-09-24 07:15:39,911 | INFO     | traces error code: 0
2024-09-24 10:15:41 (8852): Guest Log: 2024-09-24 07:15:39,911 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-09-24 10:15:41 (8852): Guest Log: 2024-09-24 07:15:40,029 [wrapper] ==== pilot stdout END ====
2024-09-24 10:15:41 (8852): Guest Log: 2024-09-24 07:15:40,035 [wrapper] ==== wrapper stdout RESUME ====
2024-09-24 10:15:41 (8852): Guest Log: 2024-09-24 07:15:40,040 [wrapper] pilotpid: 5917
2024-09-24 10:15:41 (8852): Guest Log: 2024-09-24 07:15:40,046 [wrapper] Pilot exit status: 0
2024-09-24 10:15:41 (8852): Guest Log: 2024-09-24 07:15:40,725 [wrapper] pandaids: 6342527076
2024-09-24 10:15:41 (8852): Guest Log: 2024-09-24 07:15:40,762 [wrapper] cleanup supervisor_pilot  7398 5918
2024-09-24 10:15:41 (8852): Guest Log: 2024-09-24 07:15:40,771 [wrapper] Test setup, not cleaning
2024-09-24 10:15:41 (8852): Guest Log: 2024-09-24 07:15:40,777 [wrapper] ==== wrapper stdout END ====
2024-09-24 10:15:41 (8852): Guest Log: 2024-09-24 07:15:40,783 [wrapper] ==== wrapper stderr END ====
2024-09-24 10:15:41 (8852): Guest Log: 2024-09-24 07:15:40,797 [wrapper] apfmon messages muted
2024-09-24 10:15:41 (8852): Guest Log:  *** Error codes and diagnostics ***
2024-09-24 10:15:41 (8852): Guest Log:     "exeErrorCode": 0,
2024-09-24 10:15:41 (8852): Guest Log:     "exeErrorDiag": "",
2024-09-24 10:15:41 (8852): Guest Log:     "pilotErrorCode": 0,
2024-09-24 10:15:41 (8852): Guest Log:     "pilotErrorDiag": "",
2024-09-24 10:15:41 (8852): Guest Log:  *** Listing of results directory ***
2024-09-24 10:15:41 (8852): Guest Log: total 166416
2024-09-24 10:15:41 (8852): Guest Log: -rw-r--r--. 1 atlas atlas    482533 Sep 23 10:54 pilot3.tar.gz
2024-09-24 10:15:41 (8852): Guest Log: -rw-r--r--. 1 atlas atlas      5655 Sep 23 11:03 queuedata.json
2024-09-24 10:15:41 (8852): Guest Log: -rwx------. 1 atlas atlas     33679 Sep 23 11:06 runpilot2-wrapper.sh
2024-09-24 10:15:41 (8852): Guest Log: -rwxr-xr-x. 1 atlas atlas      8878 Sep 24 04:25 init_data.xml
2024-09-24 10:15:41 (8852): Guest Log: -rwxr-xr-x. 1 atlas atlas    495971 Sep 24 04:25 input.tar.gz
2024-09-24 10:15:41 (8852): Guest Log: -rwxr-xr-x. 1 atlas atlas     17539 Sep 24 04:25 start_atlas.sh
2024-09-24 10:15:41 (8852): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Sep 24 04:25 EVNT.41078629._000621.pool.root.1 -> /data/./ATLAS.root_0
2024-09-24 10:15:41 (8852): Guest Log: -rw-r--r--. 1 atlas atlas      2556 Sep 24 04:26 pandaJob.out
2024-09-24 10:15:41 (8852): Guest Log: -rw-------. 1 atlas atlas       424 Sep 24 04:26 setup.sh.local
2024-09-24 10:15:41 (8852): Guest Log: -rw-------. 1 atlas atlas   1011804 Sep 24 04:28 agis_schedconf.cvmfs.json
2024-09-24 10:15:41 (8852): Guest Log: -rw-------. 1 atlas atlas   1618603 Sep 24 04:28 agis_ddmendpoints.agis.ALL.json
2024-09-24 10:15:41 (8852): Guest Log: drwx------. 4 atlas atlas      4096 Sep 24 04:28 pilot3
2024-09-24 10:15:41 (8852): Guest Log: -rw-------. 1 atlas atlas        95 Sep 24 07:14 pilot_heartbeat.json
2024-09-24 10:15:41 (8852): Guest Log: -rw-------. 1 atlas atlas 164390214 Sep 24 07:14 HITS.41078631._027810.pool.root.1
2024-09-24 10:15:41 (8852): Guest Log: -rw-------. 1 atlas atlas      1030 Sep 24 07:15 memory_monitor_summary.json
2024-09-24 10:15:41 (8852): Guest Log: -rw-------. 1 atlas atlas    299365 Sep 24 07:15 log.41078631._027810.job.log.tgz.1
2024-09-24 10:15:41 (8852): Guest Log: -rw-------. 1 atlas atlas      7744 Sep 24 07:15 heartbeat.json
2024-09-24 10:15:41 (8852): Guest Log: -rw-------. 1 atlas atlas      4398 Sep 24 07:15 pilotlog.txt
2024-09-24 10:15:41 (8852): Guest Log: -rw-------. 1 atlas atlas    814777 Sep 24 07:15 log.41078631._027810.job.log.1
2024-09-24 10:15:41 (8852): Guest Log: -rw-------. 1 atlas atlas       357 Sep 24 07:15 output.list
2024-09-24 10:15:41 (8852): Guest Log: -rw-r--r--. 1 atlas atlas       620 Sep 24 07:15 runtime_log
2024-09-24 10:15:41 (8852): Guest Log: -rw-------. 1 atlas atlas   1136640 Sep 24 07:15 result.tar.gz
2024-09-24 10:15:41 (8852): Guest Log: -rw-r--r--. 1 atlas atlas     10968 Sep 24 07:15 runtime_log.err
2024-09-24 10:15:41 (8852): Guest Log: -rw-------. 1 atlas atlas       659 Sep 24 07:15 RksLDmt4vC6n9Rq4apOajLDm4fhM0noT9bVorHsSDmMtWKDmAdzSYo.diag
2024-09-24 10:15:41 (8852): Guest Log: Looking for outputfile HITS.41078631._027810.pool.root.1
2024-09-24 10:15:41 (8852): Guest Log: HITS file was successfully produced
2024-09-24 10:15:41 (8852): Guest Log: -rw-------. 1 atlas atlas 164390214 Sep 24 07:14 /home/atlas/RunAtlas/HITS.41078631._027810.pool.root.1
2024-09-24 10:15:43 (8852): Guest Log: Successfully finished the ATLAS job!
2024-09-24 10:15:43 (8852): Guest Log: Copying the results back to the shared directory!
2024-09-24 10:15:43 (8852): Guest Log:  *** Contents of shared directory: ***
2024-09-24 10:15:43 (8852): Guest Log: total 591612
2024-09-24 10:15:43 (8852): Guest Log: -rwxrwxrwx. 1 root root 439746284 Sep 24 04:25 ATLAS.root_0
2024-09-24 10:15:43 (8852): Guest Log: -rwxrwxrwx. 1 root root 164390214 Sep 24 07:15 HITS.pool.root.1
2024-09-24 10:15:43 (8852): Guest Log: -rwxrwxrwx. 1 root root      8878 Sep 24 04:25 init_data.xml
2024-09-24 10:15:43 (8852): Guest Log: -rwxrwxrwx. 1 root root    495971 Sep 23 13:41 input.tar.gz
2024-09-24 10:15:43 (8852): Guest Log: -rwxrwxrwx. 1 root root   1136640 Sep 24 07:15 result.tar.gz
2024-09-24 10:15:43 (8852): Guest Log: -rwxrwxrwx. 1 root root     17539 Sep 23 13:41 start_atlas.sh
2024-09-24 10:15:43 (8852): Guest Log:  *** Success! Shutting down the machine. ***
2024-09-24 10:15:43 (8852): VM Completion File Detected.
2024-09-24 10:15:43 (8852): Powering off VM.
2024-09-24 10:15:44 (8852): Successfully stopped VM.
2024-09-24 10:15:44 (8852): Deregistering VM. (boinc_3618ae12ad691790, slot#2)
2024-09-24 10:15:44 (8852): Removing network bandwidth throttle group from VM.
2024-09-24 10:15:44 (8852): Removing VM from VirtualBox.
10:15:49 (8852): called boinc_finish(0)

</stderr_txt>
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