Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:00:00 (15307): wrapper (7.7.26015): starting
18:00:00 (15307): wrapper: running run_atlas (--nthreads 8)
[2024-09-22 18:00:00] Arguments: --nthreads 8
[2024-09-22 18:00:00] Threads: 8
[2024-09-22 18:00:00] Checking for CVMFS
[2024-09-22 18:00:01] Probing /cvmfs/atlas.cern.ch... OK
[2024-09-22 18:00:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-09-22 18:00:01] Running cvmfs_config stat atlas.cern.ch
[2024-09-22 18:00:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-09-22 18:00:01] 2.11.2.0 2871 82115 119532 137536 1 56 16063286 20275201 1 130560 0 42182622 99.958 12981187 35410 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2024-09-22 18:00:01] CVMFS is ok
[2024-09-22 18:00:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-09-22 18:00:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-09-22 18:00:01] Further information can be found at the LHC@home message board.
[2024-09-22 18:00:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-09-22 18:00:01] Checking for apptainer binary...
[2024-09-22 18:00:01] Using apptainer found in PATH at /usr/bin/apptainer
[2024-09-22 18:00:01] Running /usr/bin/apptainer --version
[2024-09-22 18:00:01] apptainer version 1.3.2-1.el7
[2024-09-22 18:00:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-09-22 18:00:02] c-204-34.aglt2.org
[2024-09-22 18:00:02] apptainer works
[2024-09-22 18:00:02] Set ATHENA_PROC_NUMBER=8
[2024-09-22 18:00:02] Set ATHENA_CORE_NUMBER=8
[2024-09-22 18:00:02] Starting ATLAS job with PandaID=6341519090
[2024-09-22 18:00:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-09-22 19:37:47]  *** The last 200 lines of the pilot log: ***
[2024-09-22 19:37:47]  is_tar=False
[2024-09-22 19:37:47]  lfn=log.41078631._018312.job.log.tgz.1
[2024-09-22 19:37:47]  mtime=0
[2024-09-22 19:37:47]  protocol_id=None
[2024-09-22 19:37:47]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-09-22 19:37:47]  replicas=None
[2024-09-22 19:37:47]  scope=mc23_13p6TeV
[2024-09-22 19:37:47]  status=None
[2024-09-22 19:37:47]  status_code=0
[2024-09-22 19:37:47]  storage_token=
[2024-09-22 19:37:47]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6341519090/log.41078631._018312.job.log.tgz.1
[2024-09-22 19:37:47]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cc/0d/log.41078631._018312.job.log.tgz.1
[2024-09-22 19:37:47]  workdir=None
[2024-09-22 19:37:47] ]
[2024-09-22 19:37:47] 2024-09-22 23:37:21,749 | INFO     | transferring file log.41078631._018312.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6341519090/log.41078631._018312.job.log.tgz.1 to /tmp/boinchome/slots/
[2024-09-22 19:37:47] 2024-09-22 23:37:21,749 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6341519090/log.41078631._018312.job.log.tgz.1 /tmp/boinchome/slots/0/log.41078631._018312.job
[2024-09-22 19:37:47] 2024-09-22 23:37:21,777 | INFO     | adding to output.list: log.41078631._018312.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cc/0d/log.41078631._018312.job.log.tg
[2024-09-22 19:37:47] 2024-09-22 23:37:21,778 | INFO     | summary of transferred files:
[2024-09-22 19:37:47] 2024-09-22 23:37:21,778 | INFO     |  -- lfn=log.41078631._018312.job.log.tgz.1, status_code=0, status=transferred
[2024-09-22 19:37:47] 2024-09-22 23:37:21,778 | INFO     | stage-out finished correctly
[2024-09-22 19:37:47] 2024-09-22 23:37:21,873 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-09-22 19:37:47] 2024-09-22 23:37:22,997 | INFO     | job 6341519090 has state=finished
[2024-09-22 19:37:47] 2024-09-22 23:37:22,998 | INFO     | preparing for final server update for job 6341519090 in state='finished'
[2024-09-22 19:37:47] 2024-09-22 23:37:22,999 | INFO     | this job has now completed (state=finished)
[2024-09-22 19:37:47] 2024-09-22 23:37:22,999 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-09-22 19:37:47] 2024-09-22 23:37:22,999 | INFO     | log transfer has been attempted: DONE
[2024-09-22 19:37:47] 2024-09-22 23:37:22,999 | INFO     | job 6341519090 has finished - writing final server update
[2024-09-22 19:37:47] 2024-09-22 23:37:23,000 | INFO     | total number of processed events: 400 (read)
[2024-09-22 19:37:47] 2024-09-22 23:37:23,001 | INFO     | executing command: lscpu
[2024-09-22 19:37:47] 2024-09-22 23:37:23,032 | INFO     | found 8 cores (4 cores per socket, 2 sockets)
[2024-09-22 19:37:47] 2024-09-22 23:37:23,033 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-09-22 19:37:47] 2024-09-22 23:37:23,074 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-09-22 19:37:47] 2024-09-22 23:37:23,174 | INFO     | monitor loop #437: job 0:6341519090 is in state 'finished'
[2024-09-22 19:37:47] 2024-09-22 23:37:23,175 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-09-22 19:37:47] 2024-09-22 23:37:25,678 | INFO     | monitor loop #438: job 0:6341519090 is in state 'finished'
[2024-09-22 19:37:47] 2024-09-22 23:37:25,678 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-09-22 19:37:47] 2024-09-22 23:37:28,198 | INFO     | monitor loop #439: job 0:6341519090 is in state 'finished'
[2024-09-22 19:37:47] 2024-09-22 23:37:28,198 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-09-22 19:37:47] 2024-09-22 23:37:28,719 | INFO     | CPU arch script returned: x86-64-v2
[2024-09-22 19:37:47] 2024-09-22 23:37:28,720 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6341519090/memory_monitor_summary.json (trf name=prmon)
[2024-09-22 19:37:47] 2024-09-22 23:37:28,721 | INFO     | extracted standard info from prmon json
[2024-09-22 19:37:47] 2024-09-22 23:37:28,721 | INFO     | extracted standard memory fields from prmon json
[2024-09-22 19:37:47] 2024-09-22 23:37:28,721 | WARNING  | GPU info not found in prmon json: 'gpu'
[2024-09-22 19:37:47] 2024-09-22 23:37:28,722 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-09-22 19:37:47] 2024-09-22 23:37:28,722 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-09-22 19:37:47] 2024-09-22 23:37:28,724 | INFO     | fitting pss+swap vs Time
[2024-09-22 19:37:47] 2024-09-22 23:37:28,724 | INFO     | model: linear, x: [1727042754.0, 1727042815.0, 1727042876.0, 1727042937.0, 1727042998.0, 1727043059.0, 1727043120.0, 1727043181.0, 1727043242.0, 1727043303.0, 1727
[2024-09-22 19:37:47] 2024-09-22 23:37:28,724 | INFO     | sum of square deviations: 211285822.0
[2024-09-22 19:37:47] 2024-09-22 23:37:28,725 | INFO     | sum of deviations: 5872792324.0
[2024-09-22 19:37:47] 2024-09-22 23:37:28,725 | INFO     | mean x: 1727045407.5
[2024-09-22 19:37:47] 2024-09-22 23:37:28,725 | INFO     | mean y: 2499637.8863636362
[2024-09-22 19:37:47] 2024-09-22 23:37:28,725 | INFO     | -- intersect: -48001568578.13171
[2024-09-22 19:37:47] 2024-09-22 23:37:28,725 | INFO     | intersect: -48001568578.13171
[2024-09-22 19:37:47] 2024-09-22 23:37:28,725 | INFO     | chi2: 0.164083396497738
[2024-09-22 19:37:47] 2024-09-22 23:37:28,726 | INFO     | -- intersect: -48001568578.13171
[2024-09-22 19:37:47] 2024-09-22 23:37:28,726 | INFO     | current memory leak: 27.80 B/s (using 88 data points, chi2=0.16)
[2024-09-22 19:37:47] 2024-09-22 23:37:28,726 | INFO     | ..............................
[2024-09-22 19:37:47] 2024-09-22 23:37:28,726 | INFO     | . Timing measurements:
[2024-09-22 19:37:47] 2024-09-22 23:37:28,726 | INFO     | . get job = 0 s
[2024-09-22 19:37:47] 2024-09-22 23:37:28,726 | INFO     | . initial setup = 3 s
[2024-09-22 19:37:47] 2024-09-22 23:37:28,727 | INFO     | . payload setup = 9 s
[2024-09-22 19:37:47] 2024-09-22 23:37:28,727 | INFO     | . stage-in = 0 s
[2024-09-22 19:37:47] 2024-09-22 23:37:28,727 | INFO     | . payload execution = 5793 s
[2024-09-22 19:37:47] 2024-09-22 23:37:28,727 | INFO     | . stage-out = 0 s
[2024-09-22 19:37:47] 2024-09-22 23:37:28,727 | INFO     | . log creation = 0 s
[2024-09-22 19:37:47] 2024-09-22 23:37:28,727 | INFO     | ..............................
[2024-09-22 19:37:47] 2024-09-22 23:37:28,900 | INFO     | 
[2024-09-22 19:37:47] 2024-09-22 23:37:28,900 | INFO     | job summary report
[2024-09-22 19:37:47] 2024-09-22 23:37:28,901 | INFO     | --------------------------------------------------
[2024-09-22 19:37:47] 2024-09-22 23:37:28,901 | INFO     | PanDA job id: 6341519090
[2024-09-22 19:37:47] 2024-09-22 23:37:28,901 | INFO     | task id: 41078631
[2024-09-22 19:37:47] 2024-09-22 23:37:28,901 | INFO     | errors: (none)
[2024-09-22 19:37:47] 2024-09-22 23:37:28,901 | INFO     | status: LOG_TRANSFER = DONE 
[2024-09-22 19:37:47] 2024-09-22 23:37:28,901 | INFO     | pilot state: finished 
[2024-09-22 19:37:47] 2024-09-22 23:37:28,902 | INFO     | transexitcode: 0
[2024-09-22 19:37:47] 2024-09-22 23:37:28,902 | INFO     | exeerrorcode: 0
[2024-09-22 19:37:47] 2024-09-22 23:37:28,902 | INFO     | exeerrordiag: 
[2024-09-22 19:37:47] 2024-09-22 23:37:28,902 | INFO     | exitcode: 0
[2024-09-22 19:37:47] 2024-09-22 23:37:28,902 | INFO     | exitmsg: OK
[2024-09-22 19:37:47] 2024-09-22 23:37:28,902 | INFO     | cpuconsumptiontime: 41035 s
[2024-09-22 19:37:47] 2024-09-22 23:37:28,903 | INFO     | nevents: 400
[2024-09-22 19:37:47] 2024-09-22 23:37:28,903 | INFO     | neventsw: 0
[2024-09-22 19:37:47] 2024-09-22 23:37:28,903 | INFO     | pid: 26347
[2024-09-22 19:37:47] 2024-09-22 23:37:28,903 | INFO     | pgrp: 26347
[2024-09-22 19:37:47] 2024-09-22 23:37:28,903 | INFO     | corecount: 8
[2024-09-22 19:37:47] 2024-09-22 23:37:28,903 | INFO     | event service: False
[2024-09-22 19:37:47] 2024-09-22 23:37:28,904 | INFO     | sizes: {0: 2440084, 1: 2440283, 6: 2440489, 11: 2440517, 5806: 2466996, 5807: 2476140, 5814: 2476254}
[2024-09-22 19:37:47] 2024-09-22 23:37:28,904 | INFO     | --------------------------------------------------
[2024-09-22 19:37:47] 2024-09-22 23:37:28,904 | INFO     | 
[2024-09-22 19:37:47] 2024-09-22 23:37:28,904 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2024-09-22 19:37:47] 2024-09-22 23:37:28,936 | INFO     | queue jobs had 0 job(s) [purged]
[2024-09-22 19:37:47] 2024-09-22 23:37:28,936 | INFO     | queue payloads had 0 job(s) [purged]
[2024-09-22 19:37:47] 2024-09-22 23:37:28,936 | INFO     | queue data_in had 0 job(s) [purged]
[2024-09-22 19:37:47] 2024-09-22 23:37:28,937 | INFO     | queue data_out had 0 job(s) [purged]
[2024-09-22 19:37:47] 2024-09-22 23:37:28,937 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-09-22 19:37:47] 2024-09-22 23:37:28,937 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-09-22 19:37:47] 2024-09-22 23:37:28,937 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-09-22 19:37:47] 2024-09-22 23:37:28,937 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-09-22 19:37:47] 2024-09-22 23:37:28,938 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-09-22 19:37:47] 2024-09-22 23:37:28,938 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-09-22 19:37:47] 2024-09-22 23:37:28,938 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-09-22 19:37:47] 2024-09-22 23:37:28,938 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-09-22 19:37:47] 2024-09-22 23:37:28,938 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-09-22 19:37:47] 2024-09-22 23:37:28,939 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-09-22 19:37:47] 2024-09-22 23:37:28,939 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-09-22 19:37:47] 2024-09-22 23:37:28,939 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-09-22 19:37:47] 2024-09-22 23:37:28,939 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-09-22 19:37:47] 2024-09-22 23:37:28,939 | INFO     | queue completed_jobids has 1 job(s)
[2024-09-22 19:37:47] 2024-09-22 23:37:28,939 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-09-22 19:37:47] 2024-09-22 23:37:28,940 | INFO     | queue messages had 0 job(s) [purged]
[2024-09-22 19:37:47] 2024-09-22 23:37:28,940 | INFO     | job 6341519090 has completed (purged errors)
[2024-09-22 19:37:47] 2024-09-22 23:37:28,940 | INFO     | overall cleanup function is called
[2024-09-22 19:37:47] 2024-09-22 23:37:29,948 | INFO     | --- collectZombieJob: --- 10, [26347]
[2024-09-22 19:37:47] 2024-09-22 23:37:29,948 | INFO     | zombie collector waiting for pid 26347
[2024-09-22 19:37:47] 2024-09-22 23:37:29,949 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-09-22 19:37:47] 2024-09-22 23:37:29,949 | INFO     | collected zombie processes
[2024-09-22 19:37:47] 2024-09-22 23:37:29,949 | INFO     | will  attempt to kill all subprocesses of pid=26347
[2024-09-22 19:37:47] 2024-09-22 23:37:30,023 | INFO     | process IDs to be killed: [26347] (in reverse order)
[2024-09-22 19:37:47] 2024-09-22 23:37:30,081 | WARNING  | found no corresponding commands to process id(s)
[2024-09-22 19:37:47] 2024-09-22 23:37:30,082 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-09-22 19:37:47] 2024-09-22 23:37:30,086 | INFO     | did not find any defunct processes belonging to 26347
[2024-09-22 19:37:47] 2024-09-22 23:37:30,090 | INFO     | did not find any defunct processes belonging to 26347
[2024-09-22 19:37:47] 2024-09-22 23:37:30,090 | INFO     | ready for new job
[2024-09-22 19:37:47] 2024-09-22 23:37:30,091 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-09-22 19:37:47] 2024-09-22 23:37:30,092 | INFO     | **************************************
[2024-09-22 19:37:47] 2024-09-22 23:37:30,093 | INFO     | ***  PanDA Pilot version 3.8.1.66  ***
[2024-09-22 19:37:47] 2024-09-22 23:37:30,093 | INFO     | **************************************
[2024-09-22 19:37:47] 2024-09-22 23:37:30,093 | INFO     | 
[2024-09-22 19:37:47] 2024-09-22 23:37:30,093 | INFO     | architecture information:
[2024-09-22 19:37:47] 2024-09-22 23:37:30,094 | INFO     | executing command: cat /etc/os-release
[2024-09-22 19:37:47] 2024-09-22 23:37:30,117 | INFO     | cat /etc/os-release:
[2024-09-22 19:37:47] NAME="CentOS Linux"
[2024-09-22 19:37:47] VERSION="7 (Core)"
[2024-09-22 19:37:47] ID="centos"
[2024-09-22 19:37:47] ID_LIKE="rhel fedora"
[2024-09-22 19:37:47] VERSION_ID="7"
[2024-09-22 19:37:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-09-22 19:37:47] ANSI_COLOR="0;31"
[2024-09-22 19:37:47] CPE_NAME="cpe:/o:centos:centos:7"
[2024-09-22 19:37:47] HOME_URL="https://www.centos.org/"
[2024-09-22 19:37:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-09-22 19:37:47] 
[2024-09-22 19:37:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-09-22 19:37:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-09-22 19:37:47] REDHAT_SUPPORT_PRODUCT="centos"
[2024-09-22 19:37:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-09-22 19:37:47] 
[2024-09-22 19:37:47] 2024-09-22 23:37:30,117 | INFO     | **************************************
[2024-09-22 19:37:47] 2024-09-22 23:37:30,620 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2024-09-22 19:37:47] 2024-09-22 23:37:30,643 | INFO     | sufficient remaining disk space (18223202304 B)
[2024-09-22 19:37:47] 2024-09-22 23:37:30,644 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-09-22 19:37:47] 2024-09-22 23:37:30,644 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-09-22 19:37:47] 2024-09-22 23:37:30,644 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-09-22 19:37:47] 2024-09-22 23:37:30,645 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-09-22 19:37:47] 2024-09-22 23:37:30,645 | INFO     | found 0 job(s) in 20 queues
[2024-09-22 19:37:47] 2024-09-22 23:37:30,645 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-09-22 19:37:47] 2024-09-22 23:37:30,646 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-09-22 19:37:47] 2024-09-22 23:37:30,646 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-09-22 19:37:47] 2024-09-22 23:37:30,700 | INFO     | all data control threads have been joined
[2024-09-22 19:37:47] 2024-09-22 23:37:30,702 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-09-22 19:37:47] 2024-09-22 23:37:30,704 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-09-22 19:37:47] 2024-09-22 23:37:30,704 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-09-22 19:37:47] 2024-09-22 23:37:30,705 | INFO     | will abort loop
[2024-09-22 19:37:47] 2024-09-22 23:37:31,649 | INFO     | [job] retrieve thread has finished
[2024-09-22 19:37:47] 2024-09-22 23:37:31,650 | INFO     | [job] queue monitor thread has finished
[2024-09-22 19:37:47] 2024-09-22 23:37:31,705 | INFO     | [data] control thread has finished
[2024-09-22 19:37:47] 2024-09-22 23:37:31,706 | INFO     | [job] job monitor thread has finished
[2024-09-22 19:37:47] 2024-09-22 23:37:31,839 | INFO     | [job] create_data_payload thread has finished
[2024-09-22 19:37:47] 2024-09-22 23:37:31,972 | INFO     | [data] copytool_in thread has finished
[2024-09-22 19:37:47] 2024-09-22 23:37:31,978 | INFO     | all payload control threads have been joined
[2024-09-22 19:37:47] 2024-09-22 23:37:31,985 | INFO     | [payload] validate_pre thread has finished
[2024-09-22 19:37:47] 2024-09-22 23:37:32,178 | INFO     | all job control threads have been joined
[2024-09-22 19:37:47] 2024-09-22 23:37:32,340 | INFO     | [payload] execute_payloads thread has finished
[2024-09-22 19:37:47] 2024-09-22 23:37:32,349 | INFO     | [payload] failed_post thread has finished
[2024-09-22 19:37:47] 2024-09-22 23:37:32,468 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-09-22 19:37:47] 2024-09-22 23:37:32,652 | INFO     | [data] copytool_out thread has finished
[2024-09-22 19:37:47] 2024-09-22 23:37:32,983 | INFO     | [payload] control thread has finished
[2024-09-22 19:37:47] 2024-09-22 23:37:33,035 | INFO     | [job] validate thread has finished
[2024-09-22 19:37:47] 2024-09-22 23:37:33,124 | INFO     | [payload] validate_post thread has finished
[2024-09-22 19:37:47] 2024-09-22 23:37:33,184 | INFO     | [job] control thread has finished
[2024-09-22 19:37:47] 2024-09-22 23:37:36,474 | INFO     | [data] queue_monitor thread has finished
[2024-09-22 19:37:47] 2024-09-22 23:37:40,865 | INFO     | job.realtimelogging is not enabled
[2024-09-22 19:37:47] 2024-09-22 23:37:41,871 | INFO     | [payload] run_realtimelog thread has finished
[2024-09-22 19:37:47] 2024-09-22 23:37:42,014 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140035488016192)>', '<ExcThread(monitor, started 140034875299584)>']
[2024-09-22 19:37:47] 2024-09-22 23:37:42,705 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-09-22 19:37:47] 2024-09-22 23:37:42,705 | INFO     | [monitor] control thread has ended
[2024-09-22 19:37:47] 2024-09-22 23:37:47,025 | INFO     | all workflow threads have been joined
[2024-09-22 19:37:47] 2024-09-22 23:37:47,025 | INFO     | end of generic workflow (traces error code: 0)
[2024-09-22 19:37:47] 2024-09-22 23:37:47,030 | INFO     | traces error code: 0
[2024-09-22 19:37:47] 2024-09-22 23:37:47,030 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-09-22 19:37:47] 2024-09-22 23:37:47,124 [wrapper] ==== pilot stdout END ====
[2024-09-22 19:37:47] 2024-09-22 23:37:47,129 [wrapper] ==== wrapper stdout RESUME ====
[2024-09-22 19:37:47] 2024-09-22 23:37:47,133 [wrapper] pilotpid: 19118
[2024-09-22 19:37:47] 2024-09-22 23:37:47,138 [wrapper] Pilot exit status: 0
[2024-09-22 19:37:47] 2024-09-22 23:37:47,158 [wrapper] pandaids: 6341519090
[2024-09-22 19:37:47] 2024-09-22 23:37:47,208 [wrapper] cleanup supervisor_pilot 19533 19119
[2024-09-22 19:37:47] 2024-09-22 23:37:47,213 [wrapper] Test setup, not cleaning
[2024-09-22 19:37:47] 2024-09-22 23:37:47,217 [wrapper] ==== wrapper stdout END ====
[2024-09-22 19:37:47] 2024-09-22 23:37:47,222 [wrapper] ==== wrapper stderr END ====
[2024-09-22 19:37:47] 2024-09-22 23:37:47,231 [wrapper] apfmon messages muted
[2024-09-22 19:37:47]  *** Error codes and diagnostics ***
[2024-09-22 19:37:47]     "exeErrorCode": 0,
[2024-09-22 19:37:47]     "exeErrorDiag": "",
[2024-09-22 19:37:47]     "pilotErrorCode": 0,
[2024-09-22 19:37:47]     "pilotErrorDiag": "",
[2024-09-22 19:37:47]  *** Listing of results directory ***
[2024-09-22 19:37:47] total 598728
[2024-09-22 19:37:47] -rw-r--r-- 1 boincer umatlas    482533 Sep 22 15:39 pilot3.tar.gz
[2024-09-22 19:37:47] -rwx------ 1 boincer umatlas     33679 Sep 22 16:08 runpilot2-wrapper.sh
[2024-09-22 19:37:47] -rw-r--r-- 1 boincer umatlas      5655 Sep 22 16:08 queuedata.json
[2024-09-22 19:37:47] -rw-r--r-- 1 boincer umatlas       100 Sep 22 17:59 wrapper_26015_x86_64-pc-linux-gnu
[2024-09-22 19:37:47] -rwxr-xr-x 1 boincer umatlas      7986 Sep 22 17:59 run_atlas
[2024-09-22 19:37:47] -rw-r--r-- 1 boincer umatlas       105 Sep 22 17:59 job.xml
[2024-09-22 19:37:47] -rw-r--r-- 2 boincer umatlas 441109916 Sep 22 18:00 EVNT.41078629._000257.pool.root.1
[2024-09-22 19:37:47] -rw-r--r-- 2 boincer umatlas     17539 Sep 22 18:00 start_atlas.sh
[2024-09-22 19:37:47] drwxrwx--x 2 boincer umatlas      4096 Sep 22 18:00 shared
[2024-09-22 19:37:47] -rw-r--r-- 2 boincer umatlas    495954 Sep 22 18:00 input.tar.gz
[2024-09-22 19:37:47] -rw-r--r-- 1 boincer umatlas         0 Sep 22 18:00 boinc_lockfile
[2024-09-22 19:37:47] -rw-r--r-- 1 boincer umatlas      2553 Sep 22 18:00 pandaJob.out
[2024-09-22 19:37:47] -rw------- 1 boincer umatlas       462 Sep 22 18:00 setup.sh.local
[2024-09-22 19:37:47] -rw------- 1 boincer umatlas   1009462 Sep 22 18:00 agis_schedconf.cvmfs.json
[2024-09-22 19:37:47] -rw------- 1 boincer umatlas   1618603 Sep 22 18:00 agis_ddmendpoints.agis.ALL.json
[2024-09-22 19:37:47] drwx------ 4 boincer umatlas      4096 Sep 22 18:00 pilot3
[2024-09-22 19:37:47] -rw-r--r-- 1 boincer umatlas      5905 Sep 22 19:30 init_data.xml
[2024-09-22 19:37:47] -rw------- 1 boincer umatlas        95 Sep 22 19:36 pilot_heartbeat.json
[2024-09-22 19:37:47] -rw------- 1 boincer umatlas 166457234 Sep 22 19:36 HITS.41078631._018312.pool.root.1
[2024-09-22 19:37:47] -rw-r--r-- 1 boincer umatlas       530 Sep 22 19:36 boinc_task_state.xml
[2024-09-22 19:37:47] -rw------- 1 boincer umatlas      1048 Sep 22 19:37 memory_monitor_summary.json
[2024-09-22 19:37:47] -rw------- 1 boincer umatlas    318768 Sep 22 19:37 log.41078631._018312.job.log.tgz.1
[2024-09-22 19:37:47] -rw------- 1 boincer umatlas      7757 Sep 22 19:37 heartbeat.json
[2024-09-22 19:37:47] -rw-r--r-- 1 boincer umatlas      8192 Sep 22 19:37 boinc_mmap_file
[2024-09-22 19:37:47] -rw-r--r-- 1 boincer umatlas        27 Sep 22 19:37 wrapper_checkpoint.txt
[2024-09-22 19:37:47] -rw------- 1 boincer umatlas      4596 Sep 22 19:37 pilotlog.txt
[2024-09-22 19:37:47] -rw------- 1 boincer umatlas    526252 Sep 22 19:37 log.41078631._018312.job.log.1
[2024-09-22 19:37:47] -rw------- 1 boincer umatlas       357 Sep 22 19:37 output.list
[2024-09-22 19:37:47] -rw-r--r-- 1 boincer umatlas       620 Sep 22 19:37 runtime_log
[2024-09-22 19:37:47] -rw------- 1 boincer umatlas    860160 Sep 22 19:37 result.tar.gz
[2024-09-22 19:37:47] -rw-r--r-- 1 boincer umatlas     11375 Sep 22 19:37 runtime_log.err
[2024-09-22 19:37:47] -rw------- 1 boincer umatlas       647 Sep 22 19:37 h9TLDmf3hC6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmnsfKDm484Asm.diag
[2024-09-22 19:37:47] -rw-r--r-- 1 boincer umatlas     21523 Sep 22 19:37 stderr.txt
[2024-09-22 19:37:47] HITS file was successfully produced:
[2024-09-22 19:37:47] -rw------- 1 boincer umatlas 166457234 Sep 22 19:36 shared/HITS.pool.root.1
[2024-09-22 19:37:47]  *** Contents of shared directory: ***
[2024-09-22 19:37:47] total 594680
[2024-09-22 19:37:47] -rw-r--r-- 2 boincer umatlas 441109916 Sep 22 18:00 ATLAS.root_0
[2024-09-22 19:37:47] -rw-r--r-- 2 boincer umatlas     17539 Sep 22 18:00 start_atlas.sh
[2024-09-22 19:37:47] -rw-r--r-- 2 boincer umatlas    495954 Sep 22 18:00 input.tar.gz
[2024-09-22 19:37:47] -rw------- 1 boincer umatlas 166457234 Sep 22 19:36 HITS.pool.root.1
[2024-09-22 19:37:47] -rw------- 1 boincer umatlas    860160 Sep 22 19:37 result.tar.gz
19:37:49 (15307): run_atlas exited; CPU time 40912.328194
19:37:49 (15307): called boinc_finish(0)

</stderr_txt>
]]>

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